GenBank-Updates@genbank.bio.net (04/30/91)
LOCUS QULTPMY01 3265 bp ds-DNA VRT 30-APR-1991
DEFINITION Quail gene for alpha-tropomyosin, exons 1-3.
ACCESSION X16230 X14883
KEYWORDS alpha-tropomyosin; alternative splicing; tropomyosin.
SEGMENT 1 of 12
SOURCE Coturnix coturnix.
ORGANISM Coturnix coturnix
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
Neornithes; Neognathae; Galliformes; Phasianidae.
REFERENCE 1 (bases 1 to 3265)
AUTHORS Lindquester,G.J.
JOURNAL Unpublished (1989) see COMMENT for author address
STANDARD simple automatic
REFERENCE 2 (bases 1 to 3265)
AUTHORS Lindquester,G.J., Flach,J.E., Fleenor,D.E., Hickman,K.H. and
Devlin,R.B.
TITLE Avian tropomyosin gene expression
JOURNAL Nucleic Acids Res. 17, 2099-2118 (1989)
STANDARD simple automatic
COMMENT *source: library=lambda Charon4A; strain=Japanese. see X16230 -
X16241 for alpha-tropomyosin gene exons 1-13. splicing pathways:
skeletal muscle type : exons 1/3/5-10/11/12 smooth muscle type :
exons 1/2/5-10/13 nonmuscle type : exons 4/5-10/?
Data kindly reviewed (18-SEP-1989) by Lindquester G. J.
EMBL features not translated to GenBank features:
key from to description
PRM 457 460 put. CCAAT-box
PRM 509 513 put. TATA-box
Submitted (03-AUG-1989) to the EMBL Data Library.
FEATURES Location/Qualifiers
exon 690..803
/note="tropomyosin, smm (AA 1-38)"
intron 804..1468
/note="intron I"
exon 1469..1594
/note="tropomyosin, skm (AA 39-80)"
intron 1595..1776
/note="intron II"
exon 1777..1902
/note="tropomyosin, smm (AA 39-80)"
intron 1903..>3265
/note="intron III"
BASE COUNT 764 a 895 c 849 g 754 t 3 others
ORIGIN
1 cctgccggtg aatgatgggc gtctcgctac ggtgtgcgtg cacgtaaccc attgttgccc
61 cgctcccctt ctgctttaaa acagattcat ttccacgagt ggggggcnnc ctccggcacc
121 gtcctgctgc cagccacccc ggcatcgcac acgccctgag cngcccgcac aggtctctgt
181 tcccgttccc cgctccgagt ctctgcctcc ccctctttat ttttcctccc agagtagcag
241 cgaaatgccc cttcttgccc gcttagaact aagaacaaac ccctctcccc cgccttacct
301 cgcccgtcac atcccatata taggcatatc cacggtcaaa aggcgggcgg cagcgaatgg
361 gagagccgag ccgctgaaaa aagccgaggg ggagcgaagg aagggaaagg ggtagggaca
421 aatggaggag ggaaaaaaaa aaaaaaaaac ccctttccaa aaaagtattg gatgtcctga
481 ggaatgcagt cagccccctg ggaaaggcca tatcagtgag gctctccccg cccgcctccc
541 gcactccacc ggctcccgtc ccgcactcgt cggccccagc gctcctcggg gccgcggctc
601 ggattcatct cggggctctc ccgccgcttt ccctgctctg atttcggctg tacgtgtgcc
661 gcggggacgc gccctaaccc accgccgcca tggatgccat caagaaaaag atgcagatgc
721 tgaaactgga caaggagaat gccttggaca gagccgagca agccgaagcg gacaagaagg
781 cagcggagga gaggagcaag caggtctgca ccgagcccgg gtgtgactgg tgccagggca
841 catgcctttc caggcgatct ctttctctaa ccccctgttt tttttttaac gtaccttact
901 gtattcttcc ccacctcccc ctccattgcc cgaagaaccg attgaactac tgaaactccc
961 ctaaagagtt tcattctgat gccctgtggt tgaaggctcc cggggccagg caagagacgt
1021 gtccatgccc catcctgctg ggtgggggtc ctggaacagc tgcgtggcct ccgtgtcttt
1081 gtacaggggc atggctgggg gggactgcct cgagcagctg ttagcgctgg acagacatgc
1141 tgtgatttga cagacatgct gtgatttgac aaaggacttt aaggtttgtg ccccccaccc
1201 acagcactgt ccagcagact tgtccagttg tagctgctcc ccttctttcc agatgtgtcc
1261 cattttcttt gcctgtccaa gccacccccc catccacccc agcacacatg ggttttatta
1321 gtttggggtc agagcatggt ggttgtgagt ttcttggaga tcctggagaa ggccagagga
1381 aaggagagag atttaaagat gaccttcccc cttttcagag cccagggaga aatgtatctg
1441 tgcattgtat ttcctcttgt gcacctagct agaggatgac attgtgcaat tggaaaagca
1501 attgcgcgtg acggaggatt cgagggacca agtgctggaa gagctgcaca agtctgagga
1561 cagcctcctc tccgcagagg agattgctgc caaggtatcg tgcccttacc tgaagcacag
1621 agaatctaac tgtctctcct tctttctctc tctctctctc tgtccatctt ttctgtctct
1681 tctgcactcg cacttctccc tttgcacggt cacattgcct gctgcacctt ttcctgcctg
1741 ccctcccctc tccaccacct tccacccgtg tcacagctgg aggacgagct ggtggctctg
1801 caaaagaagc tgaagggcac tgaggatgag ctggacaaat actccgagtc ccttaaagat
1861 gcacaggaaa agttggaact ggctgacaaa aaggccacag atgtaagtta cccctgtccc
1921 accaccccct tcatacaaga acaggcatct ccgctgcaca ggacagccag gactcccacc
1981 aggcagcgtc aactggcgtg cttggctcag gctcctggca cctcctgggc agggaggtgg
2041 gcaacacagc actgcctcct tgcatgagat ttgcacattg tctgaggcat tgattgggtt
2101 tctgctcact caacacggtg ctttttgtgt gtacttgctg tgttccattt gctgtggatt
2161 gtcaatccag acgatgggaa aaatagcttg ggttggaatg gtagtgctgt gatagtcgat
2221 gagacagaat cagagagctg acagcaacta gctctgggag aggggcagcc gggatgtcct
2281 gtaggtccca cagatgcagg aggtataagg gctgctggtt atttctacag gacagttgtg
2341 gacatacatg cattagttcc actaccagaa gctagttggg ctcattcact catcctgcag
2401 atgaagtccc ttctcctagg tcttattcct ggagaaaaca gggatgattt cacatctcaa
2461 ggaaaagttc agtcttgcat gagagaaaac tggaagatga tacttgctgg gtttgcagtt
2521 cagaggacag ggatcttggg agcaggctgg gggatatata tagctcagca cttatatggt
2581 aatagtgcaa gagctcgtgt ccctcccagg cctcagccca cccacctgtc cacccctgac
2641 gtgcgtctaa ttaatgtatt acactcatgg agcgatgcga gtttcctgtt cctgcagata
2701 aggcctggag cagtgtggct cctacagtcc agcccagttc tctccaaata catctcgggt
2761 cctaacttac aggacacagt gaaaccgcag cgcttccaaa gccatgaccg accttttcct
2821 atagcacagc tttcagaatt ggcctcaaag ccaaaagcga gttgtcacag tcagagcaaa
2881 gcgaggcaag gatacttcta gaaagggaaa cattgctgaa gccaacttgg catcaaagac
2941 aacatgcctt tatctttact ttacttttaa aaagagcaaa ccatagagca aagcaattca
3001 gttgtgtagt tttgacagag acctcaataa taagcgcacg tagggatgag agaggggttc
3061 tgtgtgtaat gtggatcaga tgtctctgtt ctgagcgagg ctgtgcggag gagaggcact
3121 tcctagcagg gcgcttattg gactcgttca aaggaaccgc atagagatcc aggggagata
3181 ttccttataa ggaaaagtat gcagactatt tgggaatcgc cgaggatgaa ggcgagacag
3241 tgctaccgat tcctgcctga aagca
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