GenBank-Updates@genbank.bio.net (04/30/91)
LOCUS QULTPMY12 1972 bp ds-DNA VRT 30-APR-1991
DEFINITION Quail gene for alpha-tropomyosin, exon 13.
ACCESSION X16241 X14883
KEYWORDS alpha-tropomyosin; alternative splicing; tropomyosin.
SEGMENT 12 of 12
SOURCE Coturnix coturnix.
ORGANISM Coturnix coturnix
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
Neornithes; Neognathae; Galliformes; Phasianidae.
REFERENCE 1 (bases 1 to 1972)
AUTHORS Lindquester,G.J.
JOURNAL Unpublished (1989) see COMMENT for author address
STANDARD simple automatic
REFERENCE 2 (bases 1 to 1972)
AUTHORS Lindquester,G.J., Flach,J.E., Fleenor,D.E., Hickman,K.H. and
Devlin,R.B.
TITLE Avian tropomyosin gene expression
JOURNAL Nucleic Acids Res. 17, 2099-2118 (1989)
STANDARD simple automatic
COMMENT *source: library=lambda Charon4A; strain=Japanese. see X16230 -
X16241 for alpha-tropomyosin gene exons 1-13. splicing pathways:
skeletal muscle type : exons 1/3/5-10/11/12 smooth muscle type :
exons 1/2/5-10/13 nonmuscle type : exons 4/5-10/?
Data kindly reviewed (18-SEP-1989) by Lindquester G.J.
EMBL features not translated to GenBank features:
key from to description
SITE 972 977 put. polyA signal
SITE 1145 1150 put. polyA signal
POLYA 1180 1180 polyA site
Submitted (03-AUG-1989) to the EMBL Data Library.
FEATURES Location/Qualifiers
intron <1..252
/note="intron XII"
CDS join(X16230:690..803,X16230:1777..1902,X16236:838..971,
X16237:44..161,X16237:281..351,X16237:1167..1242,
X16238:177..239,X16238:504..573,251..333)
/note="tropomyosin, smm (AA 258-284)"
/codon_start=690
exon 251..333
/note="tropomyosin, smm (AA 258-284)"
BASE COUNT 561 a 372 c 421 g 617 t 1 others
ORIGIN
1 acagatctca tctgtcgagt gcatttctag cagtgcacct gcaaacagtc taaagtgtat
61 gcctgctgtt gttgtcttaa ttgaaattct ttctagacgt attctctgag ggtatcagta
121 tttatgatca tgcatatttc tcaccttccg agcctttaat tagaaatgat cactgcatgc
181 cttcatgttc tgagaatcgg tgcctctgaa gaactgctat tcatgttttg attttctgat
241 cccacaacag agaaagtggc gcatgccaaa gaagaaaacc ttaatatgca tcagatgctg
301 gatcaaactt tactggagtt aaacaacatg tgaaaacctt cttagcagca accacattgt
361 tattattttt acacctgctt gccgtgaagc cccataaaca tgtctttatt ttagtttcac
421 cacagtcaca acaacatcag ctaaattatc aggcagggtc aggaagtacc aaaaagggca
481 agctgtatgc gggttaagct atttcattat ggtttaaatg tgccatttcc ccaacaaaat
541 gttacctaca ctttgtagag agttcagaga ttggaatgct tagtctttgg aataatcctg
601 gctctgtcag gtagcgtccc acctcaagtg ccaaccacag ttttgaacaa gcatgataca
661 tcctcaaaaa agatccagca taaagggtgc tatttggatc caaaagctct gtaggggctt
721 ttatttgata cccgatgagt caggacttgt tgagcacagt aatttatttt tatcagcatt
781 ttactgatct gtgaggattt ggactttgtg cctttgattt caatagaacg aaggctgtgt
841 ggtcaacaca gtaaaacaaa ggcttatgaa ggttttaaat tgtaaacttg caactcgtta
901 cataagtgta ggtcaacatt tccgcttgag tattcttcat tgtatttttc atgttcaaat
961 gaaagattca ataaattcag gagaaaacac aaatttggaa gagattgttt aaaatgtatt
1021 ttatttgtgt ggagcttggg gcgggggtgg acttacaaat cgatattcgc ctcactttat
1081 ttttcacact ttctttgagc agtttaaagt atacctgtat gtaaacattg tataatgata
1141 tgaataaaat gcacatttta ggaatttttt aaatcgtacc tctccttgga ttttcatcat
1201 cctaatgtct gtattgctgt gtaaaactat atattggcac tgtctcactg ggtacatcgt
1261 tacacatggt tttcagtttc ccctntgctt ttaagctagc atataagaaa agcatgaaat
1321 gcagtggttt ggacttaggt ggatctgcag ctgcttaggg ggaccatact gtgagaatct
1381 atcccccccc ccccatcact tgattgtgtt tccagatgga tgcaggcagc gaccatcact
1441 caagggaaga cagacattaa agtaaaatgt aaaagcagta aaagcactgc atatctttca
1501 taataatttt caccccttct ttttctttag tacatcactg aaagctgatg ctgtacatcc
1561 ttctagcaga aaggagcttg gtaggagaca gttatagata gccctccaga tcatcagagg
1621 atctccttag caagcaactg aaatcaagag gctcagcagc ttgtgtagca gtaaaggtaa
1681 agttgtacac ggtgggtcat ttaaagggag tcgtagggtg gtggttttgg tgggatggag
1741 gaagggttgt tttgttatgt ttttttattt tgaatgaaag gcagaagttt gcagcattgc
1801 aggccttcat tggctgctgt gaagtcaacc tgagtggaaa ggagatgcgt ggattcacat
1861 tcccatgtaa gtaagtgcct ttgggaggca aaataagtgt taaaaggctc tggtagtgcc
1921 ttaagcttgc atcctgcagg tcgactctag accatccccg ggtaccgagc tc
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