GenBank-Updates@genbank.bio.net (05/02/91)
LOCUS POL2LAN 7440 bp ss-RNA VRL 02-MAY-1991 DEFINITION Poliovirus type 2 (Lansing strain), complete genome. ACCESSION M12197 KEYWORDS RNA polymerase; capsid protein; complete genome; nonstructural protein; polymerase; protease. SOURCE Poliovirus type 2 (Lansing strain), cDNA to viral RNA, clone pVR204. ORGANISM Poliovirus type 2 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7440) AUTHORS La Monica,N., Meriam,C. and Racaniello,V.R. TITLE Mapping of sequences required for mouse neurovirulence of Poliovirus type 2 Lansing JOURNAL J. Virol. 57, 515-525 (1986) STANDARD full staff_review REFERENCE 2 (bases 1 to 7440) AUTHORS Racaniello,V.R. TITLE Revision JOURNAL Unpublished (1991) STANDARD full staff_review COMMENT Computer readable copy of sequence kindly provided via electronic mail by V.R. Racaniello, 07-MAY-1986. FEATURES Location/Qualifiers virion 1..7440 /note="pv RNA" CDS 748..7371 /note="poliovirus polyprotein" /codon_start=748 mat_peptide 748..954 /note="capsid protein VP4" /codon_start=748 mat_peptide 955..1767 /note="capsid protein VP2" /codon_start=955 mat_peptide 1768..2481 /note="capsid protein VP3" /codon_start=1768 mat_peptide 2482..3384 /note="capsid protein VP1" /codon_start=2482 mat_peptide 3385..3831 /note="protease 2A" /codon_start=3385 mat_peptide 3832..4122 /note="nonstructural protein 2B" /codon_start=3832 mat_peptide 4123..5109 /note="nonstructural protein 2C" /codon_start=4123 mat_peptide 5110..5370 /note="nonstructural protein 3A" /codon_start=5110 mat_peptide 5371..5436 /note="genome-linked protein VPg" /codon_start=5371 mat_peptide 5437..5985 /note="protease 3C" /codon_start=5437 mat_peptide 5986..7368 /note="RNA polymerase 3D" /codon_start=5986 BASE COUNT 2163 a 1753 c 1722 g 1802 t ORIGIN 631 bp upstream of BalI site. 1 ttaaaacagc tctggggttg ttcccacccc agaggcccac gtggcggcca gtacactggt 61 attgcggtac ctttgtacgc ctgttttata ctcccttccc ccgtaactta gaagcacaat 121 gtccaagttc aataggaggg ggtacaaacc agtaccacca cgaacaagca cttctgttcc 181 cccggtgagg ctgtataggc tgtttccacg gctaaaagcg gctgatccgt tatccgctca 241 tgtacttcga gaagcctagt atcaccttgg aatcttcgat gcgttgcgct caacactcaa 301 ccccagagtg tagcttaggt cgatgagtct ggacgttcct caccggcgac ggtggtccag 361 gctgcgttgg cggcctacct gtggcccaaa gccacaggac gctagttgtg aacaaggtgt 421 gaagagccta ttgagctacc tgagagtcct ccggcccctg aatgcggcta atcctaacca 481 cggagcaggc agtggcaatc cagcgaccag cctgtcgtaa cgcgcaagtt cgtggcggaa 541 ccgactactt tgggtgtccg tgtttccttt tatttttaca atggctgctt atggtgacaa 601 tcattgattg ttatcataaa gcaaattgga ttggccatcc ggtgagaatt tgattattaa 661 attactctct tgttgggatt gctcctttga aatcttgtgc actcacacct attggaatta 721 cctcattgtt aagatatcat caccactatg ggcgcccaag tctcatcaca gaaagttgga 781 gcccatgaga attcaaacag agcttatggc ggatccacca ttaattacac tactattaat 841 tattacaggg attctgcgag caatgccgct agtaagcagg actttgcaca agacccatcc 901 aagttcactg aacctattaa agatgttctc attaagaccg ctcccacact aaactctcct 961 aatatcgagg cgtgtgggta tagcgacaga gtgatgcaac taaccctagg caattccacc 1021 attaccacac aggaggcggc caattctgtc gttgcatacg gccggtggcc cgagtacatc 1081 aaggactcag aagcaaatcc tgtggaccag ccaactgaac cggacgttgc cgcgtgcagg 1141 ttttacacac tagacactgt tacttggcgc aaggagtcca gagggtggtg gtggaaactg 1201 cctgatgcac taaaggacat gggattattc ggccagaaca tgttctacca ctacctcggg 1261 agggctggct atactgtgca cgtacagtgt aatgcttcaa agtttcacca gggcgccctc 1321 ggggtattcg cagttccaga aatgtgcctg gcaggcgaca gcacaaccca catgtttaca 1381 aaatatgaga atgcaaatcc gggtgagaaa gggggtgaat tcaaagggag ttttactctg 1441 gatactaacg ctaccaaccc tgcacgcaac ttttgtcccg ttgattatct cttcgggagc 1501 ggagtactgg cgggaaatgc gtttgtttac ccacatcaga taattaatct gcgcaccaac 1561 aactgtgcca cgttggtgct gccatacgtt aattcacttt ccatagacag catgacaaaa 1621 cacaacaatt ggggaattgc tatccttccg ctggcaccac ttgactttgc caccgagtcc 1681 tccactgaga tacccattac tctaactatt gcccctatgt gttgtgaatt caatgggttg 1741 cgcaacatca ctgtacccag aactcaaggg ttgccagtct taaacactcc aggaagcaac 1801 cagtacttaa cagcagacaa ctatcaatcc ccatgtgcga tacccgagtt tgatgtaaca 1861 ccacccatag acatcccggg ggaagtgcgc aacatgatgg aattggcaga gatagacacc 1921 atgatacctc tcaatctgac gaaccagcgc aagaacacca tggatatgta cagagtcgaa 1981 ctgaatgatg cggctcactc tgacacacca atattgtgtc tctcactgtc tccagcatca 2041 gatcctaggc tagcacacac tatgctaggt gaaatactga actactacac acactgggca 2101 gggtcattga agttcacatt tctcttctgc ggctcaatga tggccactgg taaattgcta 2161 gtgtcctatg cacctcctgg tgcggaagcc cctaaaagcc gcaaagaagc gatgctcggc 2221 acccacgtga tctgggacat cggattacag tcatcatgca ctatggtggt accttggatt 2281 agcaacacca catacagaca aaccatcaac gatagcttca cagaaggagg gtacatcagt 2341 atgttttacc aaactagagt tgttgtgcca ttgtccaccc ctagaaagat ggacatattg 2401 ggctttgtgt cagcctgcaa tgacttcagt gtgcgcctgt tgcgtgacac gacgcacata 2461 agccaagagg ctatgccaca aggattgggt gatttaattg aaggggttgt tgagggagtc 2521 acgagaaatg ccttgacacc actgacacct gccaacaact tgcctgatac acaatctagc 2581 ggcccagccc actctaagga aacaccagcg ctaacagccg tagagacagg ggccaccaac 2641 ccattggtgc cttcagacac ggtacaaact cgtcacgtca tccaaaagcg gacgcggtcg 2701 gagtctacgg ttgagtcttt cttcgcaaga ggagcttgtg tggccattat tgaagtggat 2761 aatgatgctc caacaaagcg tgccagtaaa ttattttcag tctggaagat aacttacaaa 2821 gacaccgttc agttaagacg taagttggag ttctttacat attcaaggtt tgacatggag 2881 ttcacctttg tggttacatc caattatacc gatgcaaaca atgggcacgc actaaatcaa 2941 gtttaccaga taatgtacat accacctggg gcaccgatcc ctggcaagtg gaatgattac 3001 acatggcaaa cgtcatctaa cccatcagtg ttttacactt acggggcacc tccagctaga 3061 atatcagtgc cctacgtggg cattgccaat gcatattctc atttttacga tgggtttgcc 3121 aaagtaccac tagcaggcca agcctcaaca gagggtgact cgctgtatgg agcggcttca 3181 ttgaatgact tcggatcact ggctgttcga gtggtgaatg accacaaccc tacgaaactc 3241 acctcaaaaa tcagagtgta catgaaacca aagcacgtca gagtgtggtg tccgcgaccc 3301 cctcgagcag tcccatacta cggaccaggg gttgactaca aggatggact agccccactg 3361 ccagggaaag gcttgacaac ctatggtttt ggccaccaaa ataaggcagt gtacacggca 3421 ggttacaaaa tttgcaatta ccacctcgcc acccaggaag acttacaaaa tgcggtaaac 3481 attatgtgga ttagagacct tttagtagtg gaatccaaag cccaaggcat agactcaatt 3541 gctagatgta actgccacac tggagtgtac tactgtgaat ccaggaggaa gtactacccg 3601 gtctctttta ctggccccac ctttcagtac atggaagcaa atgagtacta tccagcccga 3661 taccaatccc acatgttaat tggccatggt tttgcatctc caggggactg tggtgggatt 3721 ctcaggtgcc aacatggagt aattggaatc attacagctg gaggagaagg cctagtcgct 3781 ttctcggaca tcagagatct gtacgcatac gaggaggagg ctatggagca gggagtctcc 3841 aactatattg agtcccttgg ggctgcattt gggagtggat tcacccagca aataggaaac 3901 aaaatttcag aactcactag catggtcacc agcactataa ctgagaaact actaaagaat 3961 ctcattaaaa taatttcatc ccttgttatc atcaccagaa actatgaaga cacgaccaca 4021 gtgctggcta cccttgctct cctcggttgt gatgcgtccc catggcaatg gctaaagaag 4081 aaagcctgtg acatcttgga aatcccctac atcatgcgac agggcgatag ctggttgaag 4141 aagtttacag aggcatgcaa tgcagctaag ggattggaat gggtgtctaa taaaatatcc 4201 aaatttattg actggctcaa agagaagatc attccacagg ctagagacaa gctagagttt 4261 gttaccaaac tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat tcatcaatcg 4321 tgcccaagtc aggagcatca agaaatcctg ttcaataacg tgagatggtt atccatacag 4381 tcaaagagat ttgccccgct ctatgcggtt gaggctaaga gaatacaaaa gttagagcac 4441 acgattaaca actacgtaca gttcaagagc aaacaccgta ttgaaccagt atgtttgttg 4501 gtgcacggta gcccaggcac gggcaagtca gttgccacca atttaattgc cagagcaata 4561 gcagagaagg agaacacctc cacatactca ctaccaccag atccctccca tttcgatggg 4621 tacaagcaac aaggtgtggt gatcatggat gatttgaatc agaacccaga cggagcagac 4681 atgaagctgt tttgtcagat ggtctccact gtagaattca taccaccaat ggcttcgcta 4741 gaagaaaagg gtattttgtt cacatctaat tacgttttgg cctcaaccaa ttccagtcgc 4801 atcaccccac caactgttgc gcacagcgat gccctagcca ggcgctttgc atttgacatg 4861 gacatacaaa tcatgagcga gtattctaga gatggaaaat tgaacatggc gatggcaact 4921 gaaatgtgta agaactgtca tcacccagca aacttcaaga gatgttgccc attggtgtgt 4981 ggcaaagcca tccagctgat ggacaaatct tccagagtca gatatagtat agatcagatt 5041 actaccatga ttattaatga gaggaacaga agatcaagta tcggtaattg catggaggca 5101 cttttccaag gtcctcttca atacaaagac ctgaaaatag acattaagac cacacctcct 5161 cctgagtgca tcaatgattt gctccaagca gttgattctc aagaggtaag agactactgt 5221 gagaagaagg gttggatagt agacatcact agtcaggtgc aaaccgaaag aaacatcaat 5281 agagcaatga ctattcttca ggcggtcacc acatttgccg cagttgctgg agtggtgtat 5341 gtgatgtaca aactctttgc agggcatcaa ggagcgtata cagggcttcc caataagaga 5401 cccaatgtcc ccaccatcag gactgccaag gttcagggcc caggatttga ctacgcagtg 5461 gcaatggcca aaagaaacat tcttacggca actaccatta agggagagtt cacaatgctc 5521 ggagtgcatg ataatgtggc cattctacca acccacgcat caccgggtga aacaatagtc 5581 attgatggca aggaagtaga ggtactggat gctaaagccc tggaggacca ggccgggacc 5641 aacctggaaa tcaccattgt cactcttaag agaaatgaga agttcaggga catcagacca 5701 cacatcccca ctcaaatcac tgagacaaat gatggagttt taattgtgaa cactagtaag 5761 taccccaaca tgtatgttcc tgtcggtgct gtgactgaac aggggtatct caatctcagt 5821 ggacgccaaa ctgctcgtac tttaatgtac aactttccaa cgagagcagg tcaatgtggt 5881 ggagttatca cctgcactgg caaggtcatc gggatgcatg ttggtgggaa cggttcacat 5941 gggttcgcag cagccctgaa gcgatcctat ttcactcaga gtcaaggtga aatccagtgg 6001 atgagaccat caaaagaagt gggctacccc gttattaatg ctccatctaa aactaaactg 6061 gaacccagtg cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt gctcaccaaa 6121 agtgacccca gattgaagac agattttgaa gaggctatct tttccaagta tgtgggaaat 6181 aagattactg aagtggatga gtacatgaaa gaagctgtcg atcattacgc aggccagctc 6241 atgtcactag acatcaacac agaacaaatg tgccttgagg atgcaatgta tggcactgac 6301 ggtctcgaag ctctagacct cagtaccagt gctgggtatc cctatgtggc aatggggaaa 6361 aagaaaagag acattttgaa taagcaaacc agagacacaa aggaaatgca aaggcttctg 6421 gacacctatg gtattaattt acctttagtc acctatgtga aagatgagct tagatccaag 6481 accaaagtgg aacagggcaa gtccaggcta attgaggcct caagtctcaa tgactctgtc 6541 gccatgagga tggcttttgg caacttgtac gcagcattcc acaagaaccc aggtgtagtg 6601 acaggatcgg ctgttggctg tgacccagat ttgttttgga gtaaaatacc agtcctcatg 6661 gaggaaaaac tctttgcatt tgattacacg ggttatgatg cttcactaag ccccgcctgg 6721 tttgaggctc tcaagatggt tctagagaaa attgggtttg gtgacagagt ggattacatt 6781 gattatctga atcactcgca ccatctatat aaaaataaga catattgtgt taagggcggc 6841 atgccatctg gctgctctgg cacctcaatt tttaattcaa tgattaataa tctaataatc 6901 aggactctct tactgaaaac ctacaagggc atagatttag accacctgaa gatgatagcc 6961 tatggtgatg atgtaattgc ttcctacccc catgaggttg atgctagtct cctagcccaa 7021 tcaggaaaag actatggact aaccatgaca ccagctgaca aatcagccac ctttgaaaca 7081 gtcacatggg agaatgtaac attcttgaaa agattcttta gagcagatga aaagtatccc 7141 tttctggtac atccagtgat gccaatgaaa gaaattcacg aatcaattag atggactaaa 7201 gatcccagaa acactcagga tcatgttcgc tcactgtgct tattggcttg gcacaatggc 7261 gaggaagagt acaataaatt tttagctaag attagaagtg tgccaatcgg aagagcatta 7321 ctgctccctg agtactccac attgtaccgc cgttggctcg actcatttta gtaaccctac 7381 ctcagtcgaa ttggattggg tcatactgtt gtaggggtaa atttttcttt aattcggagg //