GenBank-Updates@genbank.bio.net (05/02/91)
LOCUS MBOPILINA 3328 bp ds-DNA BCT 02-MAY-1991
DEFINITION M.lacunata pilin gene inverting protein (pivml) gene, 3' end, pilin
(tfpI) pseudogene, 3' end, and tfpB gene, complete cds.
ACCESSION M59711
KEYWORDS pilin; pilin gene inverting protein; pseudogene; tandem repeat.
SOURCE M.lacunata (ATCC 17956) DNA.
ORGANISM Moraxella lacunata
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae.
REFERENCE 1 (bases 1 to 3328)
AUTHORS Marrs,C.F. and Rozsa,F.W.
TITLE Interesting sequence differences between the pilin gene inversion
regions of Moraxella lacunata ATCC 17956 and Moraxella bovis Epp63
JOURNAL Unpublished (1990)
STANDARD full staff_review
FEATURES Location/Qualifiers
CDS <1..478
/pseudo
/note="insertion of tandem repeats at bp 45-63 and 64-82
cause a frameshift"
/gene="tfpI"
/evidence=EXPERIMENTAL
/codon_start=1
CDS <1..28
/product="pilin gene inverting protein"
/gene="pivml"
/evidence=EXPERIMENTAL
/codon_start=2
repeat_unit 45..63
/rpt_type=tandem
/evidence=EXPERIMENTAL
repeat_unit 64..82
/rpt_type=tandem
/evidence=EXPERIMENTAL
CDS complement(1009..1590)
/note="There is a very strong homology to Moraxella bovis
TfpB. However a 'at' deletion results in premature
termination of this gene. There is no known function of
this gene."
/gene="tfpB"
/evidence=EXPERIMENTAL
/codon_start=1590
BASE COUNT 1019 a 659 c 678 g 972 t
ORIGIN
1 cccttttgac aaacgcattc atgaataaca tttattggta tcctagctgc aatcgctcta
61 cctagctgca atcgctctac ctgcttacca agactacatc tctaagtctc aaactactcg
121 tgtagtgggc gaactagctg ctggtaaaac tgctgtagat gctgctttgt ttgaaggtaa
181 agagccagta ttgcaagcta ataatgctga tacctccaaa gaggatattg gtctaactga
241 caccagcaac aaacctcgtt ccaacttgat gtcaaatgtt gaattaagtg gtttctctgc
301 tactagttca gctggcacta ttactggcac cttgggtaca cgtgctaata aagacatcac
361 tggtgcgaaa atcatgcaaa atcgtgctgc tgatggtgta tggagttgta ctattaacgg
421 ttctggtgct actggttgga aagacaaatt tatcccaact ggctgtacag ctcagtaata
481 atctactctt agattacaaa acaccgctcc tttatggggt ggtgttttac gtaaatacat
541 catcagcaac cactattaac atctcttaaa aagagcaatt aacatcaaat ataagaaaaa
601 ccgccactca aagaaccgtt ggcgtaccag ctcaggttac acattcaagt ctaaccacac
661 tcaattcata tcaaaatcat acaaaaaccg ttcgctctga gcctgcctgc gggtgaagcg
721 gttctccgtt atgggcgggc atagcttacc acgaacggag aacctttgtt gtgctttgaa
781 tagaatttac tatacaaatt gtcaaatatt gcttattctt ggtggtatat ttgtgccgat
841 agttggtttt tatagggtag ataaggagat ggtgtgatgt gtatggtgta atgatttaaa
901 gttttgcgat taaaaaagat aaaatgactg ttgtgcttga tgttctcacc caagataaac
961 tcttcatcac cgtttgccac caagatgtaa taagggcgat tctctacttc aataatcata
1021 acccgtaaaa aaggctgaac gcaaataccc tatcgaaaac gcagaaacga ccacatacac
1081 aaaaataaaa gccataaaaa tctgataata tttttcgtta ctcatcaact ccctaagacg
1141 aatagaaaaa gagattgccc gtccgaactt atggcaaact aaagaaatag ctaaaataga
1201 aagtacacat cccatcagac ggtatgacga caaaatacca atataaaaat acagtagcaa
1261 catgatgggt gttgatacga tcgccaataa aataaaaatt ttgacaaacc ccaaatgaga
1321 tgcaccccaa gaggcatgta gtagcccaaa aaatctctta ataaacgcct gatatccgat
1381 caaatagcca ataacaagaa tcatggatac cacacagaca taagccaaac ttctggcaat
1441 catgctacca ccttgcacta catgccacca tgggtagcca tgatatgctg cttgacccca
1501 accataagcg taagccgtcg cccaacttaa tacagccaaa tacgccattg ataccgacga
1561 ggcgacaaat ttattaaaat tatttagcat gacttaagta tcttttaaaa caagaataaa
1621 aagaaatgga tgataattgt gattgattat tttagataaa aaatagacaa gtgttttctt
1681 atttttgtat atttattgta aagataaatt tctctcacaa acaaaaatca cctccaataa
1741 gaggtgattt cgcataacta aaatatattc aataattaaa attatggtgc agtatttgtg
1801 caacctgttg gaataaattt atccttccaa ccggtagcag tgccttgctg tacgtgacaa
1861 gtccatacac cgtcattagc acgtttttga gtgatgatag caccactgat gtctttattg
1921 gcacggttac ccaaggtacc agtaatagta ccagctgaac tagtggcaga gaagccagct
1981 aacacaacgc caccagtttc ttttagtaga ttagagcgag ccttgccacc ggtggaagtt
2041 aagccaatat cttctttaga ggttgcggtg ttgccagcat ccaaaaccgg ctctttacct
2101 tcaaacaaag cagcatctac agcagtttta ccagcagcta gttcgcccac tacacgagta
2161 gtttgagact tagagatgta gtcttggtaa gcaggtagag cgattgcagc taggatacca
2221 ataatggcga ttacaatcat tagttcgata agggtgaaac ctttttgagc gttcataatg
2281 aactccttag ttcatagggg cgatattgcc agtttgttta agttaagtga ttagcaactt
2341 taaacatatt tgctaacctt acactcatac tgttgcattg tctgtgccaa ctttttggcg
2401 gatttggact gttttgggaa aaataggcaa aattgagaaa attttaaaaa ttttgtctaa
2461 aaaataagca gattttttgc cattttttaa aattgattaa gatatgtaca aatttttttc
2521 ttttttacca aaaaaatttt taaaaatttt taaaatttga tgtctggcag gtaattttgg
2581 gtgacaattt ttgtcagttt tggatttttt gacatttttt ggcaggttgg gctgacattt
2641 tggtggatgt gccaattttt gacatggaca aaatttttac ctatcaaaaa ttgttgccaa
2701 aatttgtcat attagccaat ttttgacaca aatggacact gacatggcat taatgtgtca
2761 tgtgtgacga ttttgtcaat gttgataaac tggcataaga tgatgtgaaa tgggtgaaca
2821 tcacagatcc atggcgaaca tcagattcgc tggctgtaaa ttcattttta tcaaaaaagc
2881 cccgaacatg ttcggggctt tggtgatggt ggattagtac ttttggtctt cgggggcttg
2941 ctgttcggcg gtggcggtgt tgcctgttac ggtatcagtg gcactgctgg cagcccctgt
3001 cacggcatcg gcggtggcgg tggcggcatc agagaccacc gtgcggcggt ttcggcggta
3061 tttttggcat tttctacgcc attatttgcc acgtcatgag cgacattaga gacaccttca
3121 gcggtcgcat tggctgcagc ttcgctcggc ggccacagtg tcagcagcgg ctttggcgtt
3181 attggcggtg tcagtggcgg cagactgacc gtctcggcag ccttatcgct ggtctctttg
3241 ctacacgctg tcaaagcaag ggcagcgaca agcgtggtta ggattaattt tttcataaaa
3301 gcactccaaa ggaagtatgt attagtaa
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