GenBank-Updates@genbank.bio.net (04/10/91)
LOCUS BNOCLPBB 2379 bp ds-DNA BCT 10-APR-1991
DEFINITION B.nodosus regulatory subunit of ATP-dependent protease (clpB),
fimbrial subunit (fimA), and putative fimbrial assembly protein
(fimB) genes.
ACCESSION M32230
KEYWORDS ATP-dependent protease.
SOURCE B.nodosus serotype E1, isolate VCS1137, DNA, clone pBE101.
ORGANISM Bacteroides nodosus
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Anaerobic gram-negative straight, curved and helical rods;
Bacteroidaceae.
REFERENCE 1 (bases 1 to 2379)
AUTHORS Hobbs,M., Dalrymple,B.P. and Mattick,J.S.
JOURNAL Unpublished (1990) Univ. Queensland, St. Lucia, Queensland 4067
Australia
STANDARD full staff_entry
COMMENT Draft entry and computer-readable sequence kindly submitted
by M. Hobbs, 20-FEB-1990.
FEATURES Location/Qualifiers
CDS 34..519
/product="fimbrial protein"
/gene="fimA"
/codon_start=34
CDS 653..1426
/note="possible assembly protein"
/product="fimbrial protein"
/gene="fimB"
/codon_start=653
CDS complement(1505..>2379)
/note="regulatory subunit"
/product="ATP-dependent protease"
/gene="clpB"
/codon_start=2377
BASE COUNT 709 a 517 c 431 g 722 t
ORIGIN
1 tttaaatgtt cacattctta ataggagaat atgatgaaaa gtttacaaaa aggtttcacc
61 ttaatcgaac tcatgattgt agttgcaatt atcggtatct tagcggcttt cgctatccct
121 gcatacaacg actacatcgc tcgttcacaa gcagctgaag gcttaacact ggctgatggt
181 ttaaaaatcc gtatcgctga ccacttagaa aatggctctt gtacagaaga tgctaatgct
241 ggtgctggtg aaaaaggcaa cgaagacaaa ggtaagtacg ctttagcagt aattgagggt
301 gattatgctc aaaatgctac cgacctcaaa ccagaagata agaatggttg taaagttgta
361 atcacttatg gtcaaggtac tgcggggtca aagatctcca agttgatcga taccaaagtg
421 ttagaacttg aacaattggt taatggttct tacacccaag gcgacgctac tactttggat
481 gctaaattta ttccgaatgc tgttaaaaaa tcacaataac tagctcttaa atgtgaaagc
541 ctctcttttg agaggctttt tttatggttt attgtttcta tatcatttaa acaaaagaaa
601 attaactcat aatcatctac tctatatctt gtctaagtag gagtatatct tcatgaacaa
661 acaacgcttt ctttttgctg ctaagatttc aggcattcac tttttgcttt cgtttgtcgt
721 tgcgctagca ttagcaggac ttatcttttt cgtttggtat ccctttcctt accaaaagat
781 tatgggaagt tttaaattat tctttttaat ttctggtatt gatgtttgtt gtggaccgct
841 gctgactttt attttatcca atccgcaaaa acgcttgaaa gaatgcatca ttgatttctc
901 tttgattatt ttcattcaac tttccgcctt tatttatggc atgtacaaca tttatttggc
961 gcgtcccgtt gctgtagttt ttgaactgga cagtattcgt attttatcga aaggtgatat
1021 tttgcttgat gaattgccac aagctttacc agaatttcgt caatttcctt attttggtca
1081 tcatctcctt gctgttcgtg gctggaaaaa cgccgaagag cgaaaagaag gcgttgagaa
1141 agcatttcaa ggtttcgaca ttgcgcaacg accaacactc tgggttgcct attcatctga
1201 acttgaaaaa attcgcaaag cggcaaaacc tcttgcgcaa agtttttcaa aactcaatgc
1261 taaacaacag caagacgtaa aaaccgctct gcaaaaagct cgtctcaata tggaagaagc
1321 attcttctta ccgttggtat ccaatcgttc tatggaatgg atggttattc tggataaaaa
1381 tatgaacatt acgacggcag ttgaaattga tgcatttgaa ttataaaaaa cgatccgttt
1441 taaagcttca atgcgtttcc ccacaaaaaa accgcccgca gggcggtttt tcaatcatta
1501 aaaatcagtg gaaagtaaaa tttgtgccat caaaaccaat cgtaattgta ctttgcggca
1561 aatattgtcc tgctaacaac gcctgcgcca aaggattttc aatataattt tgaatcgcac
1621 gttttagcgg acgggcgcca aaaagcggat cataacccaa ttcaaccaat tgattaatcg
1681 catcttcttc aacgcttaac agtaattcgc gcgtttgcaa acgttgccgc aaacgttcca
1741 attgaatttg cgcaatgcga tacatatgcg tttttgccaa accgtgaaac acaatcgctt
1801 catcaatacg attaataaat tcggggcgga aatgcgccat cacaatctcc atcactgccg
1861 atttcatctc ttcatacgat ttctccgcca gcaattgaat catatcggag cccaaattgg
1921 aggtcataat aatcaccgtg tgacgaaaat cgaccgttct accttgccca tcagtcaaac
1981 gaccttcatc taaaacctgc aataacgtat taaaaacatc gctatgcgct ttttccacct
2041 catcaaataa caccacgcta tacggtttgc gccgcacggc ttccgttaaa taaccgcctt
2101 gatcgtagcc aacataaccc ggcggcgccc caattaaacg tgcaacacta tgtttttcca
2161 tgaattcgct catatcgatg cgcaccatat tttcttcact atcaaacaaa aattgcgcca
2221 aagtacggca taattcagtt ttaccaacac ccgtcgggcc caaaaataaa aaagaaccaa
2281 ttggacgttt tgggtcagat aatcccgcgc gattgcgccg aatcgcgttg gcaaccgctt
2341 caactgccgt tttttgtcct accacgcgtt catttaata
//GenBank-Updates@genbank.bio.net (04/25/91)
LOCUS BNOCLPBB 2379 bp ds-DNA BCT 25-APR-1991
DEFINITION B.nodosus regulatory subunit of ATP-dependent protease (clpB),
fimbrial subunit (fimA), and putative fimbrial assembly protein
(fimB) genes.
ACCESSION M32230
KEYWORDS ATP-dependent protease.
SOURCE B.nodosus serotype E1, isolate VCS1137, DNA, clone pBE101.
ORGANISM Bacteroides nodosus
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Anaerobic gram-negative straight, curved and helical rods;
Bacteroidaceae.
REFERENCE 1 (bases 1 to 2379)
AUTHORS Hobbs,M., Dalrymple,B.P. and Mattick,J.S.
JOURNAL Unpublished (1990) Univ. Queensland, St. Lucia, Queensland 4067
Australia
STANDARD full staff_review
REFERENCE 2 (sites)
AUTHORS Gottesman,S., Squires,C., Pichersky,E., Carrington,M., Hobbs,M.,
Mattick,J.S., Dalrymple,B., Kuramitsu,H., Shiroza,T., Foster,T.,
Clark,W.P., Ross,B., Squires,C.L. and Maurizi,M.R.
TITLE Conservation of the regulatory subunit for the Clp ATP-dependent
protease in prokaryotes and eukaryotes
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3513-3517 (1990)
STANDARD full staff_review
REFERENCE 3 (sites)
AUTHORS Hobbs,M., Dalrymple,B.P., Cox,P.T., Livingston,S.P., Delaney,S.F.
and Mattick,J.S.
TITLE Organization of the fimbrial gene region of Bacteroides nodosus:
Class I and class II strains
JOURNAL Mol. Microbiol. (1991) In press
STANDARD full staff_review
REFERENCE 4 (sites)
AUTHORS Mattick,J.S., Anderson,B.J., Cox,P.T., Dalrymple,B.P., Bills,M.M.,
Hobbs,M. and Egerton,J.R.
TITLE Gene sequences and comparison of the fimbrial subunits
representative of Bacteroides nodosus serogroups A to I: Class I
and class II strains
JOURNAL Mol. Microbiol. (1991) In press
STANDARD full staff_review
COMMENT Draft entry and computer-readable sequence kindly submitted
by M. Hobbs, 20-FEB-1990.
FEATURES Location/Qualifiers
CDS 34..519
/product="fimbrial protein"
/gene="fimA"
/codon_start=34
CDS 653..1426
/note="possible assembly protein"
/product="fimbrial protein"
/gene="fimB"
/codon_start=653
CDS complement(1505..>2379)
/note="regulatory subunit"
/product="ATP-dependent protease"
/gene="clpB"
/codon_start=2377
BASE COUNT 709 a 517 c 431 g 722 t
ORIGIN
1 tttaaatgtt cacattctta ataggagaat atgatgaaaa gtttacaaaa aggtttcacc
61 ttaatcgaac tcatgattgt agttgcaatt atcggtatct tagcggcttt cgctatccct
121 gcatacaacg actacatcgc tcgttcacaa gcagctgaag gcttaacact ggctgatggt
181 ttaaaaatcc gtatcgctga ccacttagaa aatggctctt gtacagaaga tgctaatgct
241 ggtgctggtg aaaaaggcaa cgaagacaaa ggtaagtacg ctttagcagt aattgagggt
301 gattatgctc aaaatgctac cgacctcaaa ccagaagata agaatggttg taaagttgta
361 atcacttatg gtcaaggtac tgcggggtca aagatctcca agttgatcga taccaaagtg
421 ttagaacttg aacaattggt taatggttct tacacccaag gcgacgctac tactttggat
481 gctaaattta ttccgaatgc tgttaaaaaa tcacaataac tagctcttaa atgtgaaagc
541 ctctcttttg agaggctttt tttatggttt attgtttcta tatcatttaa acaaaagaaa
601 attaactcat aatcatctac tctatatctt gtctaagtag gagtatatct tcatgaacaa
661 acaacgcttt ctttttgctg ctaagatttc aggcattcac tttttgcttt cgtttgtcgt
721 tgcgctagca ttagcaggac ttatcttttt cgtttggtat ccctttcctt accaaaagat
781 tatgggaagt tttaaattat tctttttaat ttctggtatt gatgtttgtt gtggaccgct
841 gctgactttt attttatcca atccgcaaaa acgcttgaaa gaatgcatca ttgatttctc
901 tttgattatt ttcattcaac tttccgcctt tatttatggc atgtacaaca tttatttggc
961 gcgtcccgtt gctgtagttt ttgaactgga cagtattcgt attttatcga aaggtgatat
1021 tttgcttgat gaattgccac aagctttacc agaatttcgt caatttcctt attttggtca
1081 tcatctcctt gctgttcgtg gctggaaaaa cgccgaagag cgaaaagaag gcgttgagaa
1141 agcatttcaa ggtttcgaca ttgcgcaacg accaacactc tgggttgcct attcatctga
1201 acttgaaaaa attcgcaaag cggcaaaacc tcttgcgcaa agtttttcaa aactcaatgc
1261 taaacaacag caagacgtaa aaaccgctct gcaaaaagct cgtctcaata tggaagaagc
1321 attcttctta ccgttggtat ccaatcgttc tatggaatgg atggttattc tggataaaaa
1381 tatgaacatt acgacggcag ttgaaattga tgcatttgaa ttataaaaaa cgatccgttt
1441 taaagcttca atgcgtttcc ccacaaaaaa accgcccgca gggcggtttt tcaatcatta
1501 aaaatcagtg gaaagtaaaa tttgtgccat caaaaccaat cgtaattgta ctttgcggca
1561 aatattgtcc tgctaacaac gcctgcgcca aaggattttc aatataattt tgaatcgcac
1621 gttttagcgg acgggcgcca aaaagcggat cataacccaa ttcaaccaat tgattaatcg
1681 catcttcttc aacgcttaac agtaattcgc gcgtttgcaa acgttgccgc aaacgttcca
1741 attgaatttg cgcaatgcga tacatatgcg tttttgccaa accgtgaaac acaatcgctt
1801 catcaatacg attaataaat tcggggcgga aatgcgccat cacaatctcc atcactgccg
1861 atttcatctc ttcatacgat ttctccgcca gcaattgaat catatcggag cccaaattgg
1921 aggtcataat aatcaccgtg tgacgaaaat cgaccgttct accttgccca tcagtcaaac
1981 gaccttcatc taaaacctgc aataacgtat taaaaacatc gctatgcgct ttttccacct
2041 catcaaataa caccacgcta tacggtttgc gccgcacggc ttccgttaaa taaccgcctt
2101 gatcgtagcc aacataaccc ggcggcgccc caattaaacg tgcaacacta tgtttttcca
2161 tgaattcgct catatcgatg cgcaccatat tttcttcact atcaaacaaa aattgcgcca
2221 aagtacggca taattcagtt ttaccaacac ccgtcgggcc caaaaataaa aaagaaccaa
2281 ttggacgttt tgggtcagat aatcccgcgc gattgcgccg aatcgcgttg gcaaccgctt
2341 caactgccgt tttttgtcct accacgcgtt catttaata
//GenBank-Updates@genbank.bio.net (05/03/91)
LOCUS DIHCLPBB 2379 bp ds-DNA BCT 03-MAY-1991
DEFINITION B.nodosus regulatory subunit of ATP-dependent protease (clpB),
fimbrial subunit (fimA), and putative fimbrial assembly protein
(fimB) genes.
ACCESSION M32230
KEYWORDS ATP-dependent protease.
SOURCE B.nodosus serotype E1, isolate VCS1137, DNA, clone pBE101.
ORGANISM Dichelobacter nodosus
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Anaerobic gram-negative straight, curved and helical rods;
Cardiobacteriaceae.
REFERENCE 1 (bases 1 to 2379)
AUTHORS Hobbs,M., Dalrymple,B.P. and Mattick,J.S.
JOURNAL Unpublished (1990) Univ. Queensland, St. Lucia, Queensland 4067
Australia
STANDARD full staff_review
REFERENCE 2 (sites)
AUTHORS Gottesman,S., Squires,C., Pichersky,E., Carrington,M., Hobbs,M.,
Mattick,J.S., Dalrymple,B., Kuramitsu,H., Shiroza,T., Foster,T.,
Clark,W.P., Ross,B., Squires,C.L. and Maurizi,M.R.
TITLE Conservation of the regulatory subunit for the Clp ATP-dependent
protease in prokaryotes and eukaryotes
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3513-3517 (1990)
STANDARD full staff_review
REFERENCE 3 (sites)
AUTHORS Hobbs,M., Dalrymple,B.P., Cox,P.T., Livingston,S.P., Delaney,S.F.
and Mattick,J.S.
TITLE Organization of the fimbrial gene region of Bacteroides nodosus:
Class I and class II strains
JOURNAL Mol. Microbiol. 5, 543-560 (1991)
STANDARD full staff_review
REFERENCE 4 (sites)
AUTHORS Mattick,J.S., Anderson,B.J., Cox,P.T., Dalrymple,B.P., Bills,M.M.,
Hobbs,M. and Egerton,J.R.
TITLE Gene sequences and comparison of the fimbrial subunits
representative of Bacteroides nodosus serogroups A to I: Class I
and class II strains
JOURNAL Mol. Microbiol. 5, 561-573 (1991)
STANDARD full staff_review
COMMENT Draft entry and computer-readable sequence kindly submitted
by M. Hobbs, 20-FEB-1990.
FEATURES Location/Qualifiers
CDS 34..519
/product="fimbrial protein"
/gene="fimA"
/codon_start=34
CDS 653..1426
/note="possible assembly protein"
/product="fimbrial protein"
/gene="fimB"
/codon_start=653
CDS complement(1505..>2379)
/note="regulatory subunit"
/product="ATP-dependent protease"
/gene="clpB"
/codon_start=2377
BASE COUNT 709 a 517 c 431 g 722 t
ORIGIN
1 tttaaatgtt cacattctta ataggagaat atgatgaaaa gtttacaaaa aggtttcacc
61 ttaatcgaac tcatgattgt agttgcaatt atcggtatct tagcggcttt cgctatccct
121 gcatacaacg actacatcgc tcgttcacaa gcagctgaag gcttaacact ggctgatggt
181 ttaaaaatcc gtatcgctga ccacttagaa aatggctctt gtacagaaga tgctaatgct
241 ggtgctggtg aaaaaggcaa cgaagacaaa ggtaagtacg ctttagcagt aattgagggt
301 gattatgctc aaaatgctac cgacctcaaa ccagaagata agaatggttg taaagttgta
361 atcacttatg gtcaaggtac tgcggggtca aagatctcca agttgatcga taccaaagtg
421 ttagaacttg aacaattggt taatggttct tacacccaag gcgacgctac tactttggat
481 gctaaattta ttccgaatgc tgttaaaaaa tcacaataac tagctcttaa atgtgaaagc
541 ctctcttttg agaggctttt tttatggttt attgtttcta tatcatttaa acaaaagaaa
601 attaactcat aatcatctac tctatatctt gtctaagtag gagtatatct tcatgaacaa
661 acaacgcttt ctttttgctg ctaagatttc aggcattcac tttttgcttt cgtttgtcgt
721 tgcgctagca ttagcaggac ttatcttttt cgtttggtat ccctttcctt accaaaagat
781 tatgggaagt tttaaattat tctttttaat ttctggtatt gatgtttgtt gtggaccgct
841 gctgactttt attttatcca atccgcaaaa acgcttgaaa gaatgcatca ttgatttctc
901 tttgattatt ttcattcaac tttccgcctt tatttatggc atgtacaaca tttatttggc
961 gcgtcccgtt gctgtagttt ttgaactgga cagtattcgt attttatcga aaggtgatat
1021 tttgcttgat gaattgccac aagctttacc agaatttcgt caatttcctt attttggtca
1081 tcatctcctt gctgttcgtg gctggaaaaa cgccgaagag cgaaaagaag gcgttgagaa
1141 agcatttcaa ggtttcgaca ttgcgcaacg accaacactc tgggttgcct attcatctga
1201 acttgaaaaa attcgcaaag cggcaaaacc tcttgcgcaa agtttttcaa aactcaatgc
1261 taaacaacag caagacgtaa aaaccgctct gcaaaaagct cgtctcaata tggaagaagc
1321 attcttctta ccgttggtat ccaatcgttc tatggaatgg atggttattc tggataaaaa
1381 tatgaacatt acgacggcag ttgaaattga tgcatttgaa ttataaaaaa cgatccgttt
1441 taaagcttca atgcgtttcc ccacaaaaaa accgcccgca gggcggtttt tcaatcatta
1501 aaaatcagtg gaaagtaaaa tttgtgccat caaaaccaat cgtaattgta ctttgcggca
1561 aatattgtcc tgctaacaac gcctgcgcca aaggattttc aatataattt tgaatcgcac
1621 gttttagcgg acgggcgcca aaaagcggat cataacccaa ttcaaccaat tgattaatcg
1681 catcttcttc aacgcttaac agtaattcgc gcgtttgcaa acgttgccgc aaacgttcca
1741 attgaatttg cgcaatgcga tacatatgcg tttttgccaa accgtgaaac acaatcgctt
1801 catcaatacg attaataaat tcggggcgga aatgcgccat cacaatctcc atcactgccg
1861 atttcatctc ttcatacgat ttctccgcca gcaattgaat catatcggag cccaaattgg
1921 aggtcataat aatcaccgtg tgacgaaaat cgaccgttct accttgccca tcagtcaaac
1981 gaccttcatc taaaacctgc aataacgtat taaaaacatc gctatgcgct ttttccacct
2041 catcaaataa caccacgcta tacggtttgc gccgcacggc ttccgttaaa taaccgcctt
2101 gatcgtagcc aacataaccc ggcggcgccc caattaaacg tgcaacacta tgtttttcca
2161 tgaattcgct catatcgatg cgcaccatat tttcttcact atcaaacaaa aattgcgcca
2221 aagtacggca taattcagtt ttaccaacac ccgtcgggcc caaaaataaa aaagaaccaa
2281 ttggacgttt tgggtcagat aatcccgcgc gattgcgccg aatcgcgttg gcaaccgctt
2341 caactgccgt tttttgtcct accacgcgtt catttaata
//