GenBank-Updates@genbank.bio.net (05/10/91)
LOCUS RATMHRT1 4795 bp ds-DNA ROD 10-MAY-1991
DEFINITION Rat MHC class I antigen gene (RT1-u haplotype), complete cds.
ACCESSION M64795 M34659
KEYWORDS cell surface antigen; cell surface glycoprotein; class I gene;
integral membrane protein; major histocompatibility complex.
SOURCE Rat (strain BB/Wor (RT1-u haplotype)) liver DNA, individual/isolate
W-subline.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 4795)
AUTHORS Kryspin-Sorensen,I., Johansen,T. and Kastern,W.
TITLE Genomic organization and sequence of a rat class I MHC gene that is
an apparent pseudogene
JOURNAL Immunogenetics 33, 213-215 (1991)
STANDARD full staff_entry
FEATURES Location/Qualifiers
exon join(429..493,496..697)
/number=2
/gene="MHC class I RT1.A-4"
mRNA join(154..226,429..697,901..1176,2144..2428,2514..2630,
2807..2839,3027..3071,3204..3208)
/gene="MHC class I RT1.A-4"
CDS join(154..226,join(429..493,496..697),901..1176,
2144..2428,2514..2630,2807..2839,3027..3071,3204..3208)
/pseudo
/product="MHC class I antigen"
/gene="MHC class I RT1.A-4"
/codon_start=154
exon 154..226
/number=1
/gene="MHC class I RT1.A-4"
exon 901..1176
/number=3
/gene="MHC class I RT1.A-4"
exon 2144..2428
/number=4
/gene="MHC class I RT1.A-4"
exon 2514..2630
/number=5
/gene="MHC class I RT1.A-4"
exon 2807..2839
/number=6
/gene="MHC class I RT1.A-4"
exon 3027..3071
/number=7
/gene="MHC class I RT1.A-4"
exon 3204..3208
/number=8
/gene="MHC class I RT1.A-4"
polyA_signal 3656..3661
/gene="MHC class I RT1.A-4"
BASE COUNT 975 a 1262 c 1336 g 1222 t
ORIGIN
1 ctgcagcaca gccctgccct tctcttgccc tggagccaca accctcttta cagctcctag
61 ggatctgatt cgctttgacc tcccactggg tagcccgatc ttgggctggt tataaagtcc
121 atgagcctga ctcagacctg tccggaatct ccaatggggg ccatggcgcc gcccttgctg
181 ctcccgctgc tggtggctgc cctggccccg actcagaccc aagccggtga gtgcggggtc
241 ctgagggaaa tggcctctgg ggtaggggcg ggggcggcac cggggaagac cggtccccgc
301 gtcgaacacc agaccctccg ccccttctcc acccgcgacc cgagccccgc gccctgctcc
361 cggcccggcc cgcgcacccg cccggggtcc cggtaggagg tccgggtctc accgcgagcc
421 gcccccaggc tcacactcgc tgcggtattt caccaccgcg gtgtcccggc ccggtctggg
481 ggagccccgg taacggaagt gggctatgtg gacgacacgg agttcgtgcg cttcgacagc
541 gacgcggagt atccgaggat ggagccgcgg gtccggtgga tggagcggga gggcccggag
601 tattgggagc gggagatgca gagagccaag ggcaaccagc agtggttccg agtggacctg
661 aggaccctgc tccgctacta caaccagagc gagggcggtg agtgaccctg ggacggaggt
721 caggatccct ccgcgtcccc acacagcagg aaacgtcccg ggtcccaagt ccgagtttca
781 ggagctgaac ccacccgagc ccgccctttc agtttggagg agtccccggg tgggcggggc
841 gggggcgggg cgggggcggg ggcggggcgg gtgggcgggg actgaccgct ggtcccgcag
901 gctcgcacac cttccaggtg atgtctggct gtgacgtggg gtcggaaggg agcctcctcc
961 gcaggtatga gcagttcgcc tatgatggcc aagattacat cgccctgaac gaagacctga
1021 aaacctggac agcggcggac acagcggcac ggatcacccg gagcaagtgg gatcaggctg
1081 gtgatgcaga ttattacaag gcctacctgg agggcacgtg cgtggagtgg ctccgcagat
1141 acctggagca cgggaaggag gcgctgctgc gtctaggtgc ggagatgcgg gcttctcctc
1201 cctctgccct cgggctgggt ctcactcctg ggaaagaaga aaccctcagc tgggtgatgc
1261 ccctgtctca gaggggagag aatgtccctg ggtctcctga tccctcacga cagtgactgc
1321 actgcctctc ccagggccca gccttctccc tggagagttc tgagtccctc tcaggtggga
1381 aggagagaac ttccccactg aacagcaagg gctccctgct gtcagccatg gcctctccca
1441 ggccaggttc tctgcccaca cccactcact gaggacactg actcctgtcc tgctgagtgt
1501 gtcagccctt cacacctcag gaccagaagt ctcctttatc tcagaggaga catggactcc
1561 actacactag gctggttctc ccagtctata gaactttcca aagaatacat tctcacagat
1621 ccctccctga tgtggggttt gcctctcttc cacaccccat ttctctctat tcctacagtg
1681 gagaatggtc ccatgagccc ttatggggta ccctggagga tataaactgt gggatttctt
1741 tttctttttt tctctctttt ttcttatttt ctttttcttt ttattttttt cctttttttt
1801 tttttttgga aggcattatt tttcttctag tcaggttttc tctgcaaaca catatttaat
1861 aaattatttt ccattccctc ttctgttcta tgaccaccca tctcatgcta tagaacatca
1921 cataaggatg gccatgttga cccactggct catgtggatt ccctcttaga ttctgagtcc
1981 ctcaggaaag tgtgcagttc tgtgctgagg gcaccagctc tctagtcgat gacagttgaa
2041 gtgtcagaca cacacagttc agtgtcatca ttgatttaac tgtgtcttgt gtagatttca
2101 gtttgtcttg ttaactgtgt gatttcttaa atcttccaca cagatccccc aaaggcacat
2161 gtgacccttc accccagacc tgaaggtgat gtcaccctga ggtgctgggc cctgggcttc
2221 taccctgctg acatcaccct gacctggcag ttgaatgggg aggacctgac ccaggacatg
2281 gaacttgtgg agaccaggcc tgcaggggat ggaaccttcc agaagtgggc atctgtggtg
2341 gtgcctcttg cgaaggagca gaattacaca tgccgtgtgg agcatgaggg gctgcctaag
2401 ccgctttccc agagatgggg taaggaggga gccttctata gaccctgagc tggtcagggc
2461 tgagagctgg ggtcatgacc cccaccttca tttcctgttc ctgtccttcc cagagtctcc
2521 tccatccact gactccaacg tggaaaccat tgttgtttct gttgttcttg gagctggggc
2581 catcattgga gctctggtgg ctgttgtgag gaagagatgg ataaaaacag gtaggaaagg
2641 gcagggtctg tttcccctca gcttccttta gaagagcgct ctgctcatta ataggaaaca
2701 tggccacacc ctccatgcta ctgtctccaa ctgggtcctc tgtcagttct ggaaacttcc
2761 tcctgtcaaa acattcagtg aaatcttaca tatttccttc tcacaggtgg aaaaggagga
2821 gtctacaccc ctgctctagg ttagtgtggg ggcaggagtg tccctgaggg tattggagtg
2881 aagctggaga tgttgggagc tctgggaatc catagtagct cctccagaga aatcttctgg
2941 gggtgtcagt tgtaccgtga tatgaataca tacatacaca tatacacata catatctttt
3001 gttttaccct agtataccct gtgcagtgac agctcccatc atctcttatg tgtctttctc
3061 agattgtaaa ggtaactctg ggtctgactg gggaggggca atgtggacat gattgggttt
3121 cagggactcc cagaatcccc tgtgagtgga gggttgttgg gctgttgtct tctcagtgat
3181 ggtttatgac tctcgttctc tagcatgaag acagctgcct ggagtggact gagtgacaga
3241 cgatgtgttc aggtctctcc tgtgacatcc agagtcctca gttctcttta gacaccagtg
3301 tctgatgttc cctgtgatct atggcttctg tgtgaagaac tgtggagccc agcctgccct
3361 gcacacctgg acactgtccc tgcactgcct gtgttccctt ccacagccaa acttcctggt
3421 ccagcctggg ggagagagag agagagagag agagagagag agagagagag agagagagag
3481 agagagagag agagagagag agagagagag agagagagag agagcagcag agagagagag
3541 agagagagtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgatatct
3601 gtatcttggg agctccatgg agccctgagc tgcagctcct cacttccaca ctgagaataa
3661 tgaatctgag tgtgaacttg attgttcaca tacttgaccc aatgtagata ttttttttaa
3721 ttattggatt gaatacttag aggttttttg ttctggggtc ttgttttgtt ttgttgataa
3781 aaataattgg cagatggaga agtttccaga atctgtgtca caagctgtgt gtatctggtg
3841 ggacagtgtg aggctgtggg agctgagtgt ggacaggctg tgcccaggtg tgctcagtca
3901 gttcttgtca ttgatggact caggtctcag ctctgtctcc tccaggctgt gccctctcca
3961 tcactgtgaa gacatgggga gagtctgtga tcacaaggac acagggaagg ccagagcctt
4021 gtccttgtcc tgtccccagg attatgagcc cccagggctg aagatcagag actcaagtgg
4081 ggtcctctaa agtgcagggt gcacaagatg agtcactaca tctcctccca ctcacttgat
4141 ttagctgcta atgatggggt cgggaatctg ccctgggctc tccctgtggc catgctgctg
4201 tggtgatttc tgcttctcct ttctggtgtc tttcccaggg ttctcagggt ctggtgtgat
4261 ctgtctgctc atctctcagg accacctcca cagctgagat aagacctaac agagaggctt
4321 ctcccctgta acttgggtac cgattcctga accaggactg tcttaccttt tccgtcttgt
4381 gttctggagt taactccctg aagtctctta atctccaccc ccagctctgt gcacctgggt
4441 cttgcagctg atgcacctgt ggttgctctg cctttggatg gctctgtatg gcaggagagc
4501 aaagtccccc tcagaggcct gggaccattt aaatcatctc atattcatag cactaaagac
4561 acggaggcag aagctgaggg aaaaacctga cagctcagca aggaaacttt attttcttaa
4621 ctacatacgg gatatctatt taccagcctg atgctacaac taaactccag cccttcagat
4681 atctgtctgt gtcactctat cagtccagtc tgcctttctc ttgagctcct gcaaacccaa
4741 gagggctcct gagctctctt tcccggattt atattttatc tgtgtcctgc cagct
//