GenBank-Updates@genbank.bio.net (05/14/91)
LOCUS HIVSFAAA 3954 bp ss-RNA VRL 14-MAY-1991
DEFINITION Human immunodeficiency virus type 1 genomic region sequence, 3'
end.
ACCESSION M65024 M38428
KEYWORDS env protein; long terminal repeat; nef protein; rev protein;
tat protein; vpu protein.
SOURCE Human immunodeficiency virus type 1 (isolate SF162) viral RNA.
ORGANISM Human immunodeficiency virus type 1
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Lentivirinae.
REFERENCE 1 (bases 1 to 3954)
AUTHORS Cheng-Mayer,C., Quiroga,M., Tung,J.W., Dina,D. and Levy,J.A.
TITLE Viral determinants of human immunodeficiency virus type 1 T-cell or
macrophage tropism, cytopathyogenicity, and CD4 antigen modulation
JOURNAL J. Virol. 64, 4390-4398 (1990)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS join(88..302,2609..2699)
/gene="tat"
/codon_start=88
CDS join(227..302,2609..2883)
/gene="rev"
/codon_start=227
exon 88..302
/number=1
/gene="tat"
exon 227..302
/number=1
/gene="rev"
CDS 319..564
/gene="vpu"
/codon_start=319
CDS 482..3025
/gene="env"
/codon_start=482
exon 2609..2699
/number=2
/gene="tat"
exon 2609..2883
/number=2
/gene="rev"
CDS 3027..3653
/gene="nef"
/codon_start=3027
LTR 3325..3775
/note="U3"
LTR 3776..3870
/note="R region"
LTR 3870..3952
/note="U5"
BASE COUNT 1313 a 710 c 973 g 958 t
ORIGIN
1 gaattctgca acaactgctg tttattcatt tcagaattgg atgtcgacat agcagaatag
61 gcattattcg acagaggaga gcaaggaatg gagccagtag atcctagatt agagccctgg
121 aagcatccag gaagtcagcc taagactgct tgtacaaatt gctattgtaa aaagtgttgc
181 tttcattgcc aagtttgttt cataacaaaa ggcttaggca tctcctatgg caggaagaag
241 cggagacagc gacgaagagc tcctccagac agtgaggttc atcaagtttc tctaccaaag
301 cagtaagtag tatatttaat gcaacctctt caaatattag caatagtagc attagtagta
361 gcagcaataa tagcaatagt tgtgtggacc atagtgtaca tagaatacag gaaaatatta
421 agacaaagaa aaatagatag gttaattgat agaataacag aaagagcaga agacagtggc
481 aatgagagtg aaggggatca ggaagaatta tcagcacttg tggagagggg gcaccttgct
541 ccttgggatg ttgatgatct gtagtgctgt agaaaaattg tgggtcacag tctattatgg
601 ggtacctgtg tggaaagaag caaccaccac tctattttgt gcatcagatg ctaaagccta
661 tgacacagag gtacataatg tctgggccac acatgcctgt gtacccacag accctaaccc
721 acaagaaata gtattggaaa atgtgacaga aaattttaac atgtggaaaa ataacatggt
781 agaacagatg catgaggata taatcagttt atgggatcaa agtctaaagc catgtgtaaa
841 gttaacccca ctctgtgtta ctctacattg cactaatttg aagaatgcta ctaataccaa
901 gagtagtaat tggaaagaga tggacagagg agaaataaaa aattgctctt tcaaggtcac
961 cacaagcata agaaataaga tgcagaaaga atatgcactt ttttataaac ttgatgtagt
1021 accaatagat aatgataata caagctataa attgataaat tgtaacacct cagtcattac
1081 acaggcctgt ccaaaggtat cctttgaacc aattcccata cattattgtg ccccggctgg
1141 ttttgcgatt ctaaagtgta atgataagaa gttcaatgga tcaggaccat gtacaaatgt
1201 cagcacagta caatgtacac atggaattag gccagtagtg tcaactcaat tgctgttaaa
1261 tggcagtcta gcagaagaag gggtagtaat tagatctgaa aatttcacag acaatgctaa
1321 aactataata gtacagctga aggaatctgt agaaattaat tgtacaagac ctaacaataa
1381 tacaagaaaa agtataacta taggaccggg gagagcattt tatgcaacag gagacataat
1441 aggagatata agacaagcac attgtaacat tagtggagaa aaatggaata acactttaaa
1501 acagatagtt acaaaattac aagcacaatt tgggaataaa acaatagtct ttaagcaatc
1561 ctcaggaggg gacccagaaa ttgtaatgca cagttttaat tgtggagggg aatttttcta
1621 ctgtaattca acacagcttt ttaatagtac ttggaataat actatagggc caaataacac
1681 taatggaact atcacactcc catgcagaat aaaacaaatt ataaacaggt ggcaggaagt
1741 aggaaaagca atgtatgccc ctcccatcag aggacaaatt agatgctcat caaatattac
1801 aggactgcta ttaacaagag atggtggtaa agagatcagt aacaccaccg agatcttcag
1861 acctggaggt ggagatatga gggacaattg gagaagtgaa ttatataaat ataaagtagt
1921 aaaaattgag ccattaggag tagcacccac caaggcaaag agaagagtgg tgcagagaga
1981 aaaaagagca gtgacgctag gagctatgtt ccttgggttc ttgggagcag caggaagcac
2041 tatgggcgca cggtcactga cgctgacggt acaggccaga caattattgt ctggtatagt
2101 gcaacagcag aacaatttgc tgagagctat tgaggcgcaa cagcatctgt tgcaactcac
2161 agtctggggc atcaagcagc tccaggcaag agtcctggct gtggaaagat acctaaagga
2221 tcaacagctc ctagggattt ggggttgctc tggaaaactc atttgcacca ctgctgtgcc
2281 ttggaatgct agttggagta ataaatctct ggatcagatt tggaataaca tgacctggat
2341 ggagtgggag agagaaattg acaattacac aaacttaata tacaccttaa ttgaagaatc
2401 gcagaaccaa caagaaaaga atgaacaaga attattagaa ttggataagt gggcaagttt
2461 gtggaattgg tttgacatat caaaatggct gtggtatata aaaatattca taatgatagt
2521 aggaggttta gtaggtttaa ggatagtttt tactgtgctt tctatagtga atagagttag
2581 gcagggatac tcaccattat catttcagac ccgcttccca gccccaaggg gacccgacag
2641 gcccgaagga atcgaagaag aaggtggaga gagagacaga gacagatcca gtccattagt
2701 gcatggatta ttagcactca tctgggacga tctacggagc ctgtgcctct tcagctacca
2761 ccgcttgaga gacttaatct tgattgcagc gaggattgtg gaacttctgg gacgcagggg
2821 gtgggaagcc ctcaagtatt gggggaatct cctgcagtat tggattcagg aactaaagaa
2881 tagtgctgtt agtttgtttg atgccatagc tatagcagta gctgagggga cagataggat
2941 tatagaagta gcacaaagaa ttggtagagc ttttctccac atacctagaa gaataagaca
3001 gggctttgaa agggctttgc tataagatgg gtggcaagtg gtcaaaacgt atgagtggat
3061 ggtctgcagt aagggaaaga atgaaacgag ctgagccagc tgagccagca gcagatgggg
3121 tgggagcagt atctcgagac ttggaaaaac atggagcaat cacaagtagt aacacagcag
3181 ctaataatgc tgattgtgcc tggctagaag cacaagagga cgaggatgtg ggctttccag
3241 tcagacctca ggtaccttta agaccaatga cttacaaggc agctttagat cttagccact
3301 ttttaaaaga aaagggggga ctggaagggt taatttactc ccaaaaaaga caagatatcc
3361 ttgatctgtg gatccaccac acacaaggct acttccctga ttggcagaac tacacaccag
3421 ggccagggat cagatatcca ctgacctttg gatggtgctt caagctagta ccagttgatc
3481 cagattatgt agaagaggcc aatgcaggag agaacaacag cttgttacac cctatgagcc
3541 agcatgggat ggatgacccg gagaaagaag tattagtgtg gaggtttgac agccgcctgg
3601 catttcatca catggcccga gagctgcatc cggagtacta caaagactgc tgacatcgag
3661 tgttctacaa gggactttcc gctggggact ttccagggag gtgtggcctg ggcgggactg
3721 gggagtggcg agccctcaga tgctgcatat aagcagctgc ttctgcctgt actgggtctc
3781 tctggttaga ccagatcaga gcctgggagc tctctggcta gctagggaac ccactgctta
3841 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact
3901 ctggtaacta gagatccctc agaccctttt agtcaatgtg gaaaatctct agca
//