GenBank-Updates@genbank.bio.net (05/16/91)
LOCUS MBGACG 2585 bp ss-DNA Circular VRL 16-MAY-1991 DEFINITION Bean golden mosaic virus (BGMV), DNA A, complete sequence. ACCESSION D00200 KEYWORDS DNA A; complete genome. SOURCE Bean golden mosaic virus DNA, clone pBGH1. ORGANISM Bean golden mosaic virus Viridae; ss-DNA nonenveloped viruses; Geminiviridae. REFERENCE 1 (bases 1 to 2585) AUTHORS Morinaga,T., Ikegami,M., Shimotohno,K. and Miura,K. TITLE Total nucleotide sequences of the infectious cloned DNAs of bean golden mosaic virus JOURNAL Microbiol. Immunol. 31, 147-154 (1987) STANDARD simple automatic COMMENT The genome of BGMV is composed of two single-stranded circular DNAs, A and B. Nucleotide sequences of DNAs A and B revealed the presence of 8 potential coding regions for proteins (ORF1,2 in A, ORF3~8 in B). ORFs 5,6,7, and 8 have not the TATA sequence or the AATAA sequence near the coding regions (see [1]). Authors of [1] originally named the major DNA component(shorter DNA) "DNA A" andthe minor one (longer DNA) "DNA B", although it is now more common to call the longer DNA as "DNA A" and the shorter one as "DNA B". FEATURES Location/Qualifiers CDS 510..1280 /note="ORF1 (putative)" /codon_start=510 CDS complement(1314..2195) /note="ORF2 (putative)" /codon_start=2195 BASE COUNT 761 a 438 c 511 g 875 t ORIGIN 5' end of the 205 base sequence common to both DNAs A and B. 1 tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 61 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 121 tctcttgaat tatcacattc atacacgtgg cggccatccg atataatatt accggatggc 181 cgcccgcgcc cctttatatc cgtacgccgc atttcgattc cagaaatgcc cttcccacgc 241 tttatacacg gtattctata ccgttggata aagcttattg cactctatca ttgaattttg 301 aattattgtc attgcttttg tgtttcgata tttatggatg ggtctgacac attactgaca 361 ttgtacaatt cgaccaatca aaattcacga tagaagtcta gttaaatcgt ttattaatat 421 gagatcctta taagtaaaca tatttgataa agaaaaaacg atcatcgttt ttaatgtttg 481 tcttgttatt ttaggcaaac gatttaacaa tgtatgcgtc taaatataaa cgtggttcgt 541 ctaactatca acgacgaggt tattcacgtt atcaaggttt tcgacgaacg gcaattgtta 601 cacgacacga tggtaagcgt cgacaacatc aatctaataa gtctaatgaa gatcctaaga 661 tgttagtgca atgtatacgt gaaaatcagt ttggtcctga ttttgttatg tcccataata 721 ctgcaatatc gacgttcatt aattatcctc aacttggtaa gatcgaacct aatcgatgta 781 ggtcatatat caagttgaaa cgcttgcgtt tcaaagggac ggttaagatt gaacgcatgc 841 acactgatgt taacatggat ggattatctc ctaagattga aggcgtattt agtattgtta 901 ttgtggttga tcggaaacca catttaagtc ctagtggatg tctccataca tttgacgaat 961 tgtttggagc aaggataaat agccatggaa acctagctgt gatgccttct ttgaaagata 1021 gattttacat acggcatttg ttgaagcgtg ttttatctgt ggacaaagac acgactatga 1081 tagacgttga gggttctact ttgttgtcta ataagcgtta taatatgtgg tctacattta 1141 atgattttga tcatgactca tgtaatggtg tttatgctaa tattgctaag aacgctttat 1201 tagtctatta ttgctggatg tcagatatta tgtctaaggc atccacattt gtatcatatg 1261 atcttgatta tgttggttga acgtcgatct aacacaagaa taaatatacg tatttatttc 1321 aaagactttg gttgaacatg aatacaattg ttgttgatac attcatttac cgttgatcgc 1381 acaatttcgt ttaattgtgc aattgacagt gttatgtttg attgggctct ctgagccccg 1441 ataattgacg ctgaatctcc cgggtccaaa acactgcttc ccagtctgtt taaattcttg 1501 tatggatgta ttgcgctatc taagtccgag tccgcatcta aatgagatac accgattgta 1561 ctttttgagg cccatgactc acccggcttt aattcgattg ggccttgtag tccatacttt 1621 gataatgatg cggatcgtat caatttcctt tcccacttcc cgtagtcgac atgtgagaag 1681 tcgatgtcct tattggaaaa ctgctttgat aatattttta ctgttggtgc ccggaagggg 1741 atatctaccg aatgtttagc cgttgataat ttcagttttc ccttgaattt tgcgaaatgt 1801 gtcctttgat gaacgttggt gtctgaaact ctgtaataga gtttccatgg tatcgggtct 1861 tttaacgaga aaaatgacga agagaagtag tggagatcta tgttgcatct tatgggaaac 1921 gtccatgatg cttgtaatga ttcattgtct gtcatccttt tgtcgtgaat ctccactaca 1981 accgatcctg tcgcgtttat aggcacctgt tgcctatact caattacaca atgatcgatc 2041 ttcatacaac tgcgactgaa tcgtgctgat agttgagacg ctgtggaagg aaattgaagg 2101 attatctcag ttagatcatg agacaattga tattcgtctc tgtgagactc tatgtaatta 2161 aatgcatttg gaggatttgc taactgagaa tccatttaag aataaatggc cgcagcggaa 2221 ttgctcagag agataaggtc cactcaacta atggatagct aacaaataag aactatattt 2281 gtgaaacact catacaactg atatactgac aaggagaatg tgaaatagat tatagtgaga 2341 tagagaagca ttgttgtaac ttatatagac agttgtatgc gattaaagct ctttttgaaa 2401 aagaacatat tatttaagta atgatcatga aatatatatc ttatatatat atattgtatg 2461 aattggacat gattattgtt atactaaatg tcgtacgatg atcagaagtt aatatggatt 2521 atattgtttt ttatgaatta tttgaaggtt aataagcaaa acgaagccgt tttgaactta 2581 ttcgt //
GenBank-Updates@genbank.bio.net (05/16/91)
LOCUS MBGBCG 2647 bp ss-DNA Circular VRL 16-MAY-1991 DEFINITION Bean golden mosaic virus (BGMV), DNA B, complete genome. ACCESSION D00201 KEYWORDS BGMV; DNA B; bean golden mosaic virus; complete genome. SOURCE Bean golden mosaic virus DNA, clone pBGC6. ORGANISM Bean golden mosaic virus Viridae; ss-DNA nonenveloped viruses; Geminiviridae. REFERENCE 1 (bases 1 to 2647) AUTHORS Morinaga,T., Ikegami,M., Shimotohno,K. and Miura,K. TITLE Total nucleotide sequences of the infectious cloned DNAs of bean golden mosaic virus JOURNAL Microbiol. Immunol. 31, 147-154 (1987) STANDARD full staff_entry COMMENT The genome of BGMV is composed of two single-stranded circular DNAs, A and B. Nucleotide sequence of DNAs A and B revealed the presence of 8 potential coding regions for proteins (ORF1,2, in A, ORF3~8 in B). ORFs 5,6,7, and 8 have not the TATA sequence or the AATAA sequence near the coding regions (see [1]). Authors of [1] originally named the major DNA component(shorter DNA) "DNA A" andthe minor one (longer DNA) "DNA B", although it is now more common to call the longer DNA as "DNA A" and the shorter one as "DNA B". FEATURES Location/Qualifiers CDS join(complement(1..6),complement(1592..2647)) /note="ORF4 (putative)" /codon_start=6 CDS 344..688 /note="ORF6 (putative)" /codon_start=344 CDS 370..1125 /note="ORF3 (putative)" /codon_start=370 CDS complement(703..1020) /note="ORF7 (putative)" /codon_start=1020 CDS complement(1122..1520) /note="ORF8 (putative)" /codon_start=1520 CDS complement(1267..1785) /note="ORF5 (putative)" /codon_start=1785 BASE COUNT 707 a 521 c 594 g 825 t ORIGIN 5' end of the 205 base sequence common to both DNAs A and B. 1 tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 61 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 121 tctcttgaat tatcacatcc atacacgtgg cggccatccg atataatatt accggatggc 181 cgcccgcgcc cctttatatc cgtactgctc cacgtggtgc tttaatttaa attaaagatg 241 tctatttttg actgaccaat gcttttgcat gtgagaagct tagatatttg tgtaaaactt 301 ggcgactaag ttttaccttc gtttataaat ttaaattaaa tgtatgccca ttccatgtgt 361 aagtccagaa tgcctaagcg tgatgcgccg tggcgtcata tggcgggaac ctccaaggtt 421 tcccgttctg gcaattattc tccaagtggt ggaatgggct caaaatccaa caaggccaat 481 gcatgggtca acaggcccat gtatagaaag ccaaggatat atcggatgta caaaagccca 541 gatgtgccaa agggatgtga aggaccttgc aaggtccaat catatgaaca acgccatgat 601 atatctcatg ttggtaaggt tatgtgtata tccgatatca cacgtgggaa tggtattacc 661 catcgtgttg gtaaacgttt ttgtgtgaag tctgtgtata ttttaggtaa gatatggatg 721 gatgaaaaca tcatgcttaa gaaccatacc aatagtgtca ttttttggtt ggtccgtgac 781 cgtagaccat atggaacccc tatggatttt ggtcaagttt ttaacatgtt tgacaatgaa 841 cctagtactg ctacggtcaa gaacgatctt cgtgatcgtt atcaagttat gcataggttc 901 aatgcaaagg tgtctggtgg tcaatatgca agcaacgagc aagccttggt aaggcgtttt 961 tggaaggtga acaaccatgt cgtctataac caccaggaag caggaaaata cgagaatcat 1021 acggagaatg cgttattgtt gtatatggca tgtacacatg cctctaatcc tgtatatgcg 1081 acattgaaaa ttcggatcta tttctatgat tcgataacca attaataaaa tttatatttt 1141 atatcatgat tctcaagtac agtatttaca tatgatttgt ttgttgcgaa ctgaacagct 1201 cgaatgacat tgtttattcc tattacgcct aacctatgta aatacaataa aactaagagt 1261 ctaaatctat ttaaatatgt cgtcccagaa gcttgaatcg atgtcgtcca gacttggaag 1321 ttcaggaatg ctttgtggag atccagtgct ttcctgaggt tgtgattgaa cctgacttgg 1381 atgtggtata tccttgtccg tgtgtatgct ggatcttcca cccgcatgat cttgaaataa 1441 aggggatttg gtacctccca aataaaaacg gaattctctg cctgatgcgc agtgatgttc 1501 tcccctgtgc gtgaatccat gatctgcgca cttgatatgg taaaatatgg aacagccgca 1561 gttcaagtca atgcgtcgtc gacgaatggc tttatgtttg gcaatcctgt gctgtgcttt 1621 gatagagggg ggctgtgagg gtgacgaaga tcgcattatg aatggtccag ttgtgtaaag 1681 ctcggttttc ctctttgttg aggaagtctt tataactgga accctcacct ggattgcaca 1741 gcacgattga tggtattcct cctttaattt gaaccggctt tccatattta cagttggatt 1801 gccagtcctt ttgtgcccca attagctctt tccagtgctt taacttcaaa taattggggc 1861 ttatgtcatc aatgacgttg tattccactg agttggaata gacacgtgaa ttaaagtcca 1921 aatgaccgct caaataatta tgtgggccta atgcacgagc ccacattgtc tttccagttc 1981 gtgaatcacc ttcgacgatg atactaatag gtctttctgg ccgcgcagcg gaaccccttc 2041 cgaaatagtc gtcaacccag tcttgcataa caaccggaat attgacgaat gatgacaacg 2101 gaaatggagg aacccatggt tccggcactt tgaagaagat ccgttcgaga ttagaacgga 2161 tgttgtgatt ttgaaggacg taatctttcg gttgttcttc cttcaatatt gtcaaggcag 2221 attcaattga atctgcgttt aatgcctttg cgtatgagtc gttggcagac tgctgacctc 2281 ctcttgcaga tctgccgtcg acttggaatt gtccccattc gattgtgact ccatctttgt 2341 cgatgtattc tttgacgtcg gaacttgatt tagctccctg aatgttcgga tggaaatgtg 2401 ctgacctggt tgtggatacc aggtcgaaca atcttttatt tgtgcagatg aatttacctt 2461 cgaactgaat aagcgcatga agatggggtt caccattatc gtgacgttcc tcacagacct 2521 tgatgaattt cttattcgtc gttgtatgaa tcttttgaag ttgcgaaaga gcttcttctt 2581 tcggtatagt gcaacgagga taagtgagga aatagttttt ggactgaact ctaaatcttt 2641 gaggtgg //