GenBank-Updates@genbank.bio.net (05/17/91)
LOCUS SLMTP1RT 8897 bp ds-DNA PLN 17-MAY-1991
DEFINITION P. polycephalum TP1 retrotransposon-like DNA
ACCESSION X53558
KEYWORDS retrotransposon.
SOURCE Physarum polycephalum DNA.
ORGANISM Physarum polycephalum
Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes;
Myxogastromycetidae; Physarales; Physaraceae.
REFERENCE 1 (bases 1 to 8897)
AUTHORS Rothnie,H.M.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Rothnie,H.M., McCurrach,K.J., Glover,L.A. and Hardman,N.
TITLE Retrotransposon-like nature of Tp1 elements: implications for the
organisation of highly repetitive hypermethylated DNA in the genome
of Physarum polycephalum.
JOURNAL Nucleic Acids Res. 19, 279-286 (1991)
STANDARD full staff_review
COMMENT *source: developmental stage=plasmodial;
From EMBL 26 entry PPTP1RT; dated 21-JAN-1991.
FEATURES Location/Qualifiers
LTR 1..277
transposon 1..8897
/note="retrotransposon-like sequence TP1"
LTR 8618..8897
BASE COUNT 2581 a 2166 c 1924 g 2222 t 4 others
ORIGIN
1 tgttggaatc tgtagcttgg ttattgtaat attagtgtaa tgacaagatt cagcatcaga
61 aataatgtga caagctgtca aagtatgtga caagctgtca aagtgtaaaa ctaacagttt
121 tatgtaatta tttccttatt cgggcgtttt gctgtgcaca ggcttgtgtg cacggcccat
181 gcaatgcaag gctcaatttt tgtactgtta tcaataaacc tttgtaacac aactcaccag
241 tgtctccccc attcccctgt aactatttct aacaaattat gggcccacag gtctgttaat
301 caacaacaga tttgtgtatt ttgaaccaca tgcgtgcgcc gcgttcacca tcctccacaa
361 cccccaacaa cctccaacaa gtctacaact tcaacacaaa gtgacagcaa cctgttattt
421 tcttcccctg tcacttttga caagcttgac aggtatttct taactcctag tccctccctc
481 ttcatttctg actgcaccgg caagtaccat gctggcatgg catatatcac cctacccacc
541 cctccccaca cttatatttc accaaataaa caccttatac ccattaaccc caatttgaca
601 gcttgttgtc atttgacagc tgtcaaacca atcaacctgc caagaacatt tcaacaactc
661 tcaaccaaat atcatctacc cccccttcta cacccatctc tcattggttt cagcatcaac
721 ctaggcctgc aaccaaccaa accccaactg tcaacttaac cccagttaac cccaatattc
781 ccacctgtca tttggtttgg aatttcaatt gttcaccttc aacaacatat ttatcttttg
841 gaaatggttt tcaagcctgg acaatagcaa actcactgag agagtcaagc ctctcactga
901 tactggaaag atagacaatt ggaaacacca actcaaagat cacctcaaag cagaaaatat
961 tgagtttgtg ttgctcacaa gagagaagat gggagagtta gaggatagct atggccccag
1021 ataagggaga ggtagtgcag caacaagtga atcctaacat ttacacacct gtacccttta
1081 ccaagcctaa gccaacccaa ccaccaccta aaccccaaag accacctcca atcccagacc
1141 ccaccccccc tgaaggcact gaggcctttg acattagcaa tatgcaagct ggagtagagc
1201 atcagaggta tatggatatg gtgaagtatg tggaagattt ggagaagtgg aacactttgg
1261 ataggagtat gaggtggata tggaagcatg ggaagaagat agagttaggt gggtagaaag
1321 agagataaac atggcaagtt cagcagaaca aggtatagag gtgccaagag tgaggagagt
1381 gagaaagaga gagagagagc ataagagacc aacagtggaa gagtgggaag agttaaatag
1441 gagattgtgt ggtgctttag ttccctgtgt tcccctaggc atgaaagatt ttgtaagaga
1501 gtgtaatgag gtgcacctaa tcctgaaaga gttagataag agatacaaat tgagtggaga
1561 ggtgccacaa ctgaatgcta gagtgagata tgagcaattt gctttcacct cctccaagga
1621 cccccaaccc caatttgaga agttagagca tttggagaag gaggcaatgg agtacagtgt
1681 ggtgtttagt gagagtgaga ggagtgctat gttgctaaag agattagact ctacacagat
1741 gaagtagatg tcaactgctg gcctctccaa cccaaccatc ctcaccacct acaacaacat
1801 caaaaagcac ctagtggaca agtggaatat ggaagtttcc ttaggagtgc acagccagtc
1861 ctcaacaaag aaagctaatc aggaaggact agaggcagcc atgtatctaa aaaacactaa
1921 ctggaactgg agggggagag ggaaaggaga tgggggggac agagaagggg agacagagga
1981 ggaggaaggg gaggtggcat acgagggagt gcaagagaaa gaggggggag atagaggtgg
2041 aaagaaagag aaggacccaa ggggatttaa gtgctacaac tgttcacagt atggacacaa
2101 ggcagtggat tgcccagagc aacaccaggg gggggagttt gaaaaagtta gaaaagaata
2161 agaagtgatt gcaggaaaag cttgcagaaa cacagtctgc cattgctgcc tactcacagg
2221 caggacaggg ggtaccagag gtcannnccc cccaccagag gagcaccaag aagagttacc
2281 tccacagaag gaatgcttgg cctctttatg gagactggac tggagaattt cctaggcact
2341 ttcaggtttg aggggggggg agtgaaatat ctttcccccc aaagttaagt ccctctccta
2401 ctgcttcttt tacttcctct cccctccctg actctctctc tcactttatg ctactaggac
2461 aggaactgga tttccccact tggcagagcc aaagaaattt ttgaagttgg atggactgga
2521 tatttgtggc ccaagtgatt atatttttct ggggggctct gtttacacat ccctcccacc
2581 tgtatgtggc tactcatctt tttctttccc cactcaatta ctcatctctc ctatctctcc
2641 cccatctctc tcccactcac aatcactctc tgagaaactt ttggaccagt tggaattttt
2701 cctgatgggc atcaacattt tggtgatgaa gtatcaagta ggacctggct attcacactt
2761 attggggggc tctgagacat caaccccccc tcatgtatgt gtcctacctt cttactcatc
2821 tatttcatct gctgctgcta ttctacccca caccatgccc tgtactccca tatgtaacat
2881 tttacatgag gaaactcacg cacaacaagt agaagacgtt cgctagagaa agaggtggat
2941 ttgggactaa gcattttatt tgcattgggg agctctgaaa catccccccc ttcagtatgt
3001 gtccccctag atttctcttt ccatcttcgt attgatttgt taccgaactc tcatctttca
3061 caaatcatgt gctcacaatt tattttatat gaatctgtgg actcaggcca gctggtggag
3121 caaggaatgg agaaagattt ggagactagt catttgcaat tattggggag ctctgtgaaa
3181 acaactcccc tgcctttatg tctccttaca tctcattctg cttctgattt ccttcctatt
3241 gttgctgtac atcaattcca ttactacgcc agattgacat gtttgttgaa aagtgacagc
3301 tgttaaatta ttttaaaacc tgccaaaccg acagctgtca ggcctgtaaa acctgtcaat
3361 tcctcagtgt gcctctgaca aaaaaaatca ccaaatgcac tgtttgacat gtgcttcatc
3421 gatgaatacg tggtaatttt ggcacgttcc accactgtgt catgtgcgag aaaactcgcc
3481 agacttttcc aacttttgaa agttgaaact ttcacagatt cacaggaatt tccacatgcc
3541 catacactga aaatttgcca tttttgctgc tggcgtatga ggcagtttgg cgatcttgct
3601 cacccgaact attttcctcc actgaaaaat tgcatacagc aaaggagaga agcgaattgt
3661 agaaagtgac aggctaggaa aaatttgcca gagctctgcc tctagtgttg agcgggtcaa
3721 gcctgaccag gggaagtgaa tggagggcca ctgcactcac atttctcttt ttcttctccc
3781 ctttcccttt tccttgttgc tttgcctgcc aatcttctct tgccttcctc aacttctctc
3841 tggcttcaaa ggatagggac tggtggcagg ccacggtgta gtggtctgtc ttgccacact
3901 agaagcaggg ttggtggttc tgggggggag aagtttgatt gctttgcttg cctcccctcc
3961 caaagcctcc cctctcccca cctctgcctc tcccccccgt tcctctccct ctacctctcc
4021 caataccagc aagtgcaatg tctgagctgc tggatacact gggttcctcc tcctttgctt
4081 ctgaggggag gatttgccaa gccacatctc tgtcaaagca aagcttgctt gatggccaaa
4141 aatggcctat ctgtctcccc tggtggaact ggtatggtgg agatgatggt ggagagcttt
4201 tccttgcagg agaaaggaac tgccttgatg aaaataaaat tgagatcttg atctgaaatt
4261 ctccccccca actctctgaa gtgcattatt ttctccttaa atttcattat ttgatctggg
4321 aaggttttgt ctaatttaaa tttgatatta tctaattctg tccttttgct gactattatc
4381 atggtgtcac tgtttatgaa ttgtttgtcc aaaatgtgaa ataaatctgg gatattcttt
4441 ctgtctaagt tgtatgttat tggttgatag atgggtgcca caaagaaata tagttgtgat
4501 attatttgct cacttaactt ctcccactgt ccccttgttg actacttcaa ttttgccccc
4561 ctaaacaatt cctatttgtc accactctct aaagaccacc cagagattta ttctcacaaa
4621 gtgtgtgtga ccacaggggg aggacaatcc attgatgcca aacacgattg gatcatggac
4681 actgggtgca cagcccacat ttgcaacaat aaagacctct tcactaagtt ggaaccctac
4741 aggcaaacaa tagccacagc gggtaaacca cttaaggtga cacaaagagg cacagtactg
4801 gttaccctaa gtgcatacaa ttctgctacc aatacaataa cagacaggcc atggacttta
4861 acagacatac tatatgtccc agagtgccct ctgaatttaa ttagcctatc taacgtacac
4921 gagaacttct atctctctac taagaatggc tacgaagaag acagcgaggt accaacaaac
4981 tcgtcctcac tgcccaccta gttggtggat tatttgtggt agacagagca ctagaccagg
5041 aagtttcatt atatgcagca actaatacct cactccacac ctggcaccag agattgggcc
5101 atataggtat tgaccggtta aaggagatga gaagaaataa gggtgctaca ggtgtagatt
5161 ttccagattc cgatatcccc aatttttcct gtgaagtttg catcctaggc aaagcacaca
5221 ggcatgccat cctgaacaag gagagagaac gcgctaccta caagggagag cggttccatg
5281 ctgacacttg tggtcctatg cagctgctat cagtaggggg gaagagatat ttagtgatgc
5341 ttgtggactg ctacagtcgc aagaagttca ccatactctc caaagacaag aaggagatta
5401 aagaaggcat actcaatttc atcgaatcca tcaacgccca actcccccct gacaagaaga
5461 tttgctactt ccactctgac ataggtggtg aatttctctc cgagatacta aagaaggacc
5521 ttncacgttt gggaattata caaaccacct cagccgccaa cacaccagaa cacaacgggg
5581 tagctgagca cgctattctc actgttgtgg gaactgcaag gtgcggtctt atagactctg
5641 gtcttcctac tcaactatgg ggagatgcag tcagaatggc tactatcatc agtaacgcag
5701 cacccagcaa ggcaaaccca aaccaccaat caccagacga gatgtggaac agcaagccca
5761 ctgacgtatc ccagtggcgc actttggttg tagagtacca tgaaggacta cgacctacca
5821 ggcaagttca gcccgcgcac cagggaggga atatatctgg ggccagctat tggaggagac
5881 ggacacagaa tttacacaca caacaccaaa aagttcgttt gcagcagaga tgtttacttt
5941 ctggaagaga aaggtagacc aagaattgag gatgctagac ctcaagaaga ggaggtattt
6001 gacctcccag aaagtcgcga tgacttttac attcctatgt ctgactcaga ggtatatggg
6061 gagtttccag aagggtacag agaccctaca gtgcctacca gagacaccag cagaaaatct
6121 gtcaagaaat ctgccacccc taaaattcct gagagactag atgccccaat acaccaggtg
6181 gattgggagg aaacaacaat aattccccag tacaccaggt ggactggagg aaaatgtaaa
6241 tatagatgtg agagctgatg agccagagga tcagagggag gaagacgatg tccctccatc
6301 cccacatcat aaatcacctg taccaccacc aggaccttcc acagaaaatt tagacctaga
6361 tcaaggagga gaaaggctta aagagctgac agagtttttc gagcaagaca catcttcttc
6421 ttcttcccgt tctccatttc ctacaccttc tactactcca cgtagtacac cacacaccac
6481 accagacact accccacctt cttcaccaga gtcagagtca acagaaaaat caagaggatc
6541 ttcgagcgat gagggaattg gaccattcgg caagaccaaa aagaaaaggc cagaggaaca
6601 gttacgcaca cgaacatgtg acagaccagg cagaggacag agagacggag tatctggagt
6661 gccgtactac atggccattc agacagcgaa gaaatcacag gggatagaga agaaaatccg
6721 aaagagaccc cccgattctg ctatggtggc gtatccacgt agcaatgacc tgctgaattt
6781 attcgcaggg aatatcgcac tgacagtgca ggaaaaggaa gaaattcctt ctgtggtaaa
6841 ggatcctatt acttataacc aagccatgaa cagacctgat aaggataaat ggcgagtagc
6901 aatggctcag gaggaaaatt ccctgagact cacaaagact tggtcatatg cattgcttcc
6961 tgcagataga aaagccatcc agtctaagtg ggtatacaaa attaagcgag atcccgcgca
7021 gtatcattaa gtataaggcg cggttagtgg caaaagaatt cacacaaaag aaaggtctag
7081 actatcacga ggcgttcaca ccagttagcg cgcatgacca gatgcgcgag tagttcttgc
7141 catcgcagtc cacgaacaac tacaacatgc gacaagtcaa catagacaat gcgtacctca
7201 acggagacat agatacagac ctgtacatga tcccatctca agggtggaca tgggacgacg
7261 gatacagtag agaacaggga tacgtgctca agctaaacaa gagcctctat ggcatcaagc
7321 aagcaggaca catttggaat tccacaatcc acgcctactg tgaagagctc ggctttaagc
7381 gtacttcagc cgaccagtgt gtgtataccc acccatttgt gcgaggaaac aaagagggat
7441 gcgaagaagg aaggataatg gctagtcttc atgtagacga gtttctactg gctggcaggc
7501 ctaagcagct ataatggttt agaacctccc tactcaacaa gtttggtatc aagtggacca
7561 cggacatttt cttccttggt ataaaaatct ctccccttcc agacagtggc atttctctct
7621 cccagagcca ctatctccag caagtcctca cagagttcaa catgctcaac tgcaagccta
7681 cctacacccc catgacaaga gggagtatta aggaactgat cgatcaccca aagaagttcc
7741 tctaggatca catgagcact ctcagtaccg cacaattgtg ggtaaactta tgtatgccat
7801 ggtggctact aggcccgatc tcgcttttgc acttagtttc ttgggccagg catcggccgc
7861 ccctactgcc atgcacatgg cgatggctat tcgagtgtta gcgtacgttc gtaccacact
7921 tgatcacagt cttcacttcc ccttcatcag atcagaggga gtgatagcag aaggttactc
7981 tgacagcaac tacgcagagt ctccttccag aaagtccacc acaggcttct gctatttcct
8041 caacagttca ctaacccatt ggtgttccaa gttgcaggcc tgcgtggcaa ccagcacctc
8101 tgtcgctgaa tggttcacac tctacgagac cgttcgcgaa ttggtgcctc ttaggaggct
8161 gctcaacgac ctaaggcacc ctcagcaaca tcccacgcgc gtatgggagg acaaccagac
8221 agcaattggc ctcctcagag acgaaacaca ccacaaccgc accaagcacg tggatgtcaa
8281 gtaccactgg atcaaagaac agatcaaccc taaaggagga ccagtggata tccagtacat
8341 caagacccaa gacaatcttg ccgacttctt caccaagcaa caaccacagc ccatcttcac
8401 agaagtttgc aaacagatag gcctccaaga ataaccttcc tctccttcag cagcaaatcc
8461 tcccatcttc ttcgttctcc cttccatcaa ccattcaccc atcttcctca ctctggacat
8521 ttggatcttt ggctttggaa acatttggct ggattttctc tctcactttt ggattggaaa
8581 cattctgatt tggagcccct ctcagtttga gagggagtgt tggaatctgt agcttgtaat
8641 ttgattgtaa tataaatgta atagcaagat tcagcgtcag aaataatgtg acaagctgtt
8701 aaagtatgtg acaagctgtc aaagtgtcaa aatctcagtt ttatgtattt atttccttat
8761 ttgggcgttt tgctgtgcac aggctcgtgc gcacgcccca tgcgacgcag ggctcgattt
8821 tttctactgt taaccaataa atactgtaac acaactcatc tgagagctcc cccattcccc
8881 tgtaactatt tctaaca
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