GenBank-Updates@genbank.bio.net (05/17/91)
LOCUS RHDPAL2 3340 bp ds-DNA PLN 17-MAY-1991
DEFINITION Rhodosporidium toruloides pal gene for phenylalanine ammonia-lyase
(EC 4.3.1.5)
ACCESSION X51513
KEYWORDS lyase; pal gene; phenylalanine ammonia-lyase.
SOURCE Rhodosporidium toruloides DNA.
ORGANISM Rhodosporidium toruloides
Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina;
Pyrenomycetes; Sordariales; Sordariaceae.
REFERENCE 1 (bases 1 to 3340; 1 to 3340)
AUTHORS Rasmussen,O.
JOURNAL Unpublished (1990)
STANDARD full automatic
COMMENT *source: library=Centralbureau voor Schimmelcultures; *source:
strain=CBS 14; See also <M18261> for R.toruloides strain IFO 0559
pal gene.
From EMBL 26 entry RTPAL2; dated 31-JUL-1990.
FEATURES Location/Qualifiers
precursor_RNA 484..>483
/note="minor (alt.) primary transcript"
precursor_RNA 491..>490
/note="major (put.) primary transcript"
precursor_RNA 495..>494
/note="minor (alt.) primary transcript"
mRNA 519..829
/note="exon 1"
CDS 519..829
/note="phenylalanine ammonia-lyase (AA 1-104) (829 is 2nd
base in codon)"
/codon_start=519
intron 830..918
/note="intron I"
mRNA 919..1005
/note="exon 2"
CDS 919..1005
/note="phenylalanine ammonia-lyase (AA 105-133) (919 is
3rd base in codon) (1005 is 2nd base in codon)"
/codon_start=919
intron 1006..1066
/note="intron II"
mRNA 1067..1201
/note="exon 3"
CDS 1067..1201
/note="phenylalanine ammonia-lyase (AA 134-177) (1067 is
3rd base in codon) (1201 is 2nd base in codon)"
/codon_start=1067
intron 1202..1258
/note="intron III"
mRNA 1259..1835
/note="exon 4"
CDS 1259..1835
/note="phenylalanine ammonia-lyase (AA 178-370) (1259 is
3rd base in codon)"
/codon_start=1259
intron 1836..1896
/note="intron IV"
mRNA 1897..2063
/note="exon 5"
CDS 1897..2063
/note="phenylalanine ammonia-lyase (AA 371-426) (2063 is
2nd base in codon)"
/codon_start=1897
intron 2064..2122
/note="intron V"
mRNA 2123..2411
/note="exon 6"
CDS 2123..2411
/note="phenylalanine ammonia-lyase (AA 427-522) (2123 is
3rd base in codon)"
/codon_start=2123
intron 2412..2467
/note="intron VI"
mRNA 2468..3052
/note="exon 7"
CDS 2468..3052
/note="phenylalanine ammonia-lyase (AA 523-716)"
/codon_start=2468
BASE COUNT 563 a 1227 c 861 g 689 t
ORIGIN
1 gacgtccagt gaacctctcc agccctctcg ccaccgcatt ctctcagcac ctatagacgc
61 tttcgggttc ccttgttccg ctcgccgtac ctgctccctc tcctccgttg tccctcgtct
121 ctctcccagg tcttgtccgc gatactccct ctccctcgta tacattctcg ctcactctct
181 ctgttgtcct ccctcttcag ctgtaaccat gtctcgttcg gctcgagttt caaggagtga
241 tcagagggac atcttcgtag cgagcgatgt cccccaccgc gcctctcccg ttcgtaccga
301 gccctgtgtt cgttcagagt cgacgtggct agccgttgcg tcgtgccggg atgcgagtgt
361 ttcgaggcaa gccgtttcgt tgcgagcgtg cgacgagggc gagcggcagt ccgtctcgag
421 gcgaacccca cttggtcgac atctggtggc ccgtcttgct cttgctctct ttctttctct
481 cttacttctc actcagacac actccaacga cgacgacgat ggcaccctcg ctcgactcga
541 tctcgcactc gttcgcaaac ggcgtcgcat ccgcaaagca ggctgtcaat ggcgcctcga
601 ccaacctcgc agtcgcaggc tcgcacctgc ccacaaccca ggtcacgcag gtcgacatcg
661 tcgagaagat gctcgccgcg ccgaccgact cgacgctcga actcgacggc tactcgctca
721 acctcggaga cgtcgtctcg gccgcgagga agggcaggcc tgtccgcgtc aaggacagcg
781 acgagatccg ctcaaagatt gacaaatcgg tcgagttctt gcgctcgcag tgagtcgtgc
841 tttcgttctc tggcgtcgag agggcgggac cttcccaagt tgccaaggga ctgactgtcg
901 ctctcctgtg tcgcgcagac tctccatgag cgtctacggc gtcacgactg gatttggcgg
961 atccgcagac acccgcaccg aggacgccat ctcgctccag aaggcgtgcg tcctcctcgt
1021 ctccctctcg cttctcgagc ttcggactga ccgtcttccc gcacagtctc ctcgagcacc
1081 agctctgcgg tgttctccct tcgtcgttcg actcgttccg cctcggccgc ggtctcgaga
1141 actcgcttcc cctcgaggtt gttcgcggcg ccatgacaat ccgcgtcaac agcttgaccc
1201 ggtgagttgc cgtccttact cactcagcgg tcttcgagct gacagttggc gcacccagcg
1261 gccactcggc tgtccgcctc gtcgtcctcg aggcgctcac caacttcctc aaccacggca
1321 tcacccccat cgtccccctc cgcggcacca tctctgcgtc gggcgacctc tctcctctct
1381 cctacattgc agcggccatc agcggtcacc cggacagcaa ggtgcacgtc gtccacgagg
1441 gcaaggagaa gatcctgtac gcccgcgagg cgatggcgct cttcaacctc gagcccgtcg
1501 tcctcggccc gaaggaaggt ctcggtctcg tcaacggcac cgccgtctca gcatcgatgg
1561 ccaccctcgc tctgcacgac gcacacatgc tctcgctcct ctcgcagtcg ctcacggcca
1621 tgacggtcga agcgatggtc ggccacgccg gctcgttcca ccccttcctt cacgacgtca
1681 cgcgccctca cccgacgcag atcgaagtcg cgggaaacat ccgcaagctc ctcgagggaa
1741 gccgctttgc tgtccaccat gaggaggagg tcaaggtcaa ggacgacgag ggcattctcc
1801 gccaggaccg ctaccccttg cgcacgtctc ctcaggtgcg cttacttctg tttgttctgc
1861 cgaagacatg acgctgacgt ccgcttactc gcgcagtggc tcggcccgct cgtcagcgac
1921 ctcattcacg cccacgccgt cctcaccatc gaggccggcc agtcgacgac cgacaaccct
1981 ctcatcgacg tcgagaacaa gacttcgcac cacggcggca atttccaggc tgccgctgtg
2041 gccaacacca tggagaagac tcggtgcgcc gcttcactgt gacctgttct cttggtctcg
2101 tgctgacgag tacgctgtgc agcctcgggc tcgcccagat cggcaagctc aacttcacgc
2161 agctcaccga gatgctcaac gccggcatga accgcggcct cccctcctgc ctcgcggccg
2221 aagacccctc gctctcctac cactgcaagg gcctcgacat cgccgctgcg gcgtacacct
2281 cggagttggg acacctcgcc aaccctgtga cgacgcatgt ccagccggct gagatggcga
2341 accaggcggt caactcgctt gcgctcatct cggctcgtcg cacgaccgag tccaacgacg
2401 tcctttctct cgtgagtcag gcgctcatca cactcgcgaa cagaagctga cgcactcggt
2461 ctcgcagctc ctcgccaccc acctctactg cgttctccaa gccatcgact tgcgcgcgat
2521 cgagttcgag ttcaagaagc agttcggccc agccatcgtc tcgctcatcg accagcactt
2581 tggctccgcc atgaccggct cgaacctgcg cgacgagctc gtcgagaagg tgaacaagac
2641 gctcgccaag cgcctcgagc agaccaactc gtacgacctc gtcccgcgct ggcacgacgc
2701 cttctccttc gccgccggca ccgtcgtcga ggtcctctcg tcgacgtcgc tctcgctcgc
2761 cgccgtcaac gcctggaagg tcgccgccgc cgagtcggcc atctcgctca cccgccaagt
2821 ccgcgagacc ttctggtccg ccgcgtcgac ctcgtcgccc gcgctctcgt acctctcgcc
2881 gcgcactcag atcctctacg ccttcgtccg cgaggagctt ggcgtcaagg cccgccgcgg
2941 agacgtcttc ctcggcaagc aagaggtgac gatcggctcg aacgtctcca agatctacga
3001 ggccatcaag tcgggcagga tcaacaacgt cctcctcaag atgctcgctt agacactctt
3061 cccactctcg catcccttcc ataccctatc ccgcctgcac tcttaggact cgcttcttgt
3121 cggactcgga tctcgcatcg cttctttcgt tcttggctgc ctctctagac cgtgtccgta
3181 ttacctcgag attgtgaata caagcagtac ccatccacgc atccgataaa tcagggagag
3241 aatctacgct tgcgggagct tcttgcgcat aaactgtcga gtgcgggcgt tagtgcgaag
3301 tcaacgaagg cgagtggcag cggctcacta ccgcctcgag
//