GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS ECODEOCA1 1718 bp ds-DNA BCT 18-MAY-1991
DEFINITION Escherichia coli deoC gene for 2-deoxyribose 5-phosphate aldolase
and deoA gene 5' region
ACCESSION X03224 J01601 V00273 X00314
KEYWORDS 2-deoxyribose 5-phospate aldolase; aldolase.
SOURCE Escherichia coli DNA.
ORGANISM Escherichia coli
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Facultatively anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (bases 1 to 807)
AUTHORS Valentin-Hansen,P., Aiba,H. and Schuemperli,D.
TITLE The structure of tandem regulatory regions in the deo operon of
Escherichia coli K12
JOURNAL EMBO J. 1, 317-322 (1982)
STANDARD full automatic
REFERENCE 2 (bases 759 to 1538)
AUTHORS Valentin-Hansen,P., Boetius,F., Hammer-Jespersen,K. and Svendsen,I.
TITLE The primary structure of Escherichia coli K12 2-deoxyribose
5-phosphate aldolase - Nucleotide sequence of the deoC gene and the
amino acid sequence of the enzyme
JOURNAL Eur. J. Biochem. 125, 561-566 (1982)
STANDARD full automatic
REFERENCE 3 (bases 1515 to 1718)
AUTHORS Valentin-Hansen,P., Hammer-Jespersen,K., Boetius,F. and Svendsen,I.
TITLE Structure and function of the intercistronic regulatory deoC-deoA
element of Escherichia coli K-12
JOURNAL EMBO J. 3, 179-183 (1984)
STANDARD full automatic
COMMENT SWISS-PROT; P00882; DEOC$ECOLI.
From EMBL entry ECDEOCA1; dated 21-FEB-1991.
FEATURES Location/Qualifiers
repeat_unit 99..106
/note="inverted repeat A"
promoter 102..107
/note="Pribnow-box like sequence"
repeat_unit 107..114
/note="inverted repeat A'"
misc_feature 114..114
/note="mRNA start site"
promoter 702..707
/note="Pribnow-box like sequence"
misc_feature 714..714
/note="mRNA start site"
CDS 759..1535
/note="2-deoxyribose 5-phosphate aldolase"
/codon_start=759
misc_signal 1553..1627
/note="region of dyad symmetry"
RBS 1655..1660
/note="rRNA-binding site"
CDS 1665..>1718
/note="deoA polypeptide"
/codon_start=1665
BASE COUNT 429 a 417 c 472 g 400 t
ORIGIN
1 gaatcagacg ggccgatatt ggcgtgcata aaggcgtctg gcagggttct gtcgaggtaa
61 cgccagaaac gttttattcg aacatcgatc tcgtcttgtg ttagaattct aacatacggt
121 tgcaacaacg catccagttg ccccaggtag accggcatcg atgtgaccga cggtacgtgg
181 tggtaaagaa tggtcagcag agagagtgcg tcatcaagat ctttcgcgcc ttccagctcc
241 agccattcgg aaccgttcgc cagaaaacgg gcgtaatcgg gtaagacata gcgcggtttg
301 tacggcgcat gaccttcaaa catatcgcag attacacctt catccaagcg cgcggcgggc
361 ttcggcagga agctgtgggt aaggcagatt gttttctgct tccagtgcca gaaaatggcg
421 cttctgctcc gggctaagca ctgggctggt gacaatttgc tggcaacgtt gttgcagtgc
481 attttcatga gaagtgggca tcttcttttc cttttatgcc gaaggtgatg cgccattgta
541 agaagtttcg tgatgttcac tttgatcctg atgcgtttgc caccactgac gcattcattt
601 gaaagtgaat tatttgaacc agatcgcatt acagtgatgc aaacttgtaa gtagatttcc
661 ttaattgtga tgtgtatcga agtgtgttgc ggagtagatg ttagaatact aacaaactcg
721 caaggtgaat tttattggcg acaagccagg agaatgaaat gactgatctg aaagcaagca
781 gcctgcgtgc actgaaattg atggacctga acaccctgaa tgacgacgac accgacgaga
841 aagtgatcgc cctgtgtcat caggccaaaa ctccggtcgg caataccgcc gctatctgta
901 tctatcctcg ctttatcccg attgctcgca aaactctgaa agagcagggc accccggaaa
961 tccgtatcgc tacggtaacc aacttcccac acggtaacga cgacatcgac atcgcgctgg
1021 cagaaacccg tgcggcaatc gcctacggtg ctgatgaagt tgacgttgtg ttcccgtacc
1081 gcgcgctgat ggcgggtaac gagcaggttg gttttgacct ggtgaaagcc tgtaaagagg
1141 cttgcgcggc agcgaatgta ctgctgaaag tgatcatcga aaccggcgaa ctgaaagacg
1201 aagcgctgat ccgtaaagcg tctgaaatct ccatcaaagc gggtgcggac ttcatcaaaa
1261 cctctaccgg taaagtggct gtgaacgcga cgccggaaag cgcgcgcatc atgatggaag
1321 tgatccgtga tatgggcgta gaaaaaaccg ttggtttcaa accggcgggc ggcgtgcgta
1381 ctgcggaaga tgcgcagaaa tatctcgcca ttgcagatga actgttcggt gctgactggg
1441 cagatgcgcg tcactaccgc tttggcgctt ccagcctgct ggcaagcctg ctgaaagcgc
1501 tgggtcacgg cgacggtaag agcgccagca gctactaagt aagatgcttt acgcctgatg
1561 cgctgcgctt atcaggccta cgagacgtat ctacccgtag gccggataag gcgtagacgc
1621 atccggcaaa agccgcctca tactcttttc ctcgggaggt taccttgttt ctcgcacaag
1681 aaattattcg taaaaaacgt gatggtcatg cgctgagc
//