GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS CELTCB110 1351 bp ds-DNA INV 18-MAY-1991
DEFINITION Caenorhabditis briggsae TCb1(#10) repetitive element
ACCESSION X54218
KEYWORDS inverted repeat.
SOURCE Caenorhabditis briggsae DNA.
ORGANISM Caenorhabditis briggsae
Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria;
Spirurida; Spirurina; Filarioidea; Filariidae.
REFERENCE 1 (bases 1 to 1351)
AUTHORS Harris,L.J., Prasad,S. and Rose,A.M.
TITLE Isolation and sequence analysis of caenorhabditis briggsae
repetitive elements related to the caenorhabditis elegans
transposon Tc1
JOURNAL J. Mol. Evol. 30, 359-369 (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 1351)
AUTHORS Harris,L.J.
JOURNAL Unpublished (1991)
STANDARD full automatic
COMMENT For TCb1#5 see CBTCB15;
From EMBL 26 entry CBTCB110; dated 23-JAN-1991.
FEATURES Location/Qualifiers
misc_feature 49..49
/note="start of sequence I.D. with Tcl/TCb1#5"
misc_feature 265..1084
/note="similar ORF to Tcl ORF1"
repeat_unit 1272..1351
/rpt_type=inverted
BASE COUNT 407 a 286 c 305 g 353 t
ORIGIN
1 accgttcggt catgaaagac aagaaagtgt acctatcaac atgataacag cgaaaaagca
61 ttgtgcgtgg tcatgaactc ggcgcgcatc cgaagatact tgcaactcag tttagttgtt
121 cttccagcca aatttaccga tagttctgaa gaaaaatcga gatggatgtg aggtttcaat
181 cagctttctc aactaaattt aacaatttag aatggcgttg ttcatcgcca atctccagga
241 agaccccgaa ccacttccag aaatatggat cggaacattt tgcgcgcatg ccgagaagat
301 cctagacgca catctacgga tattcaactt tctgtgacgt ctccaaatga accggtacca
361 tcgagaagaa ctattagaag acgtttgcaa gttgctggac tgcacggacg aagaccagtc
421 aaaaaaccac tcgtcagttt gaaaaaccga aaagctcgcg ttgaatgggc taaacagcac
481 ttgtcctggg gcccccgtga gtgggcaaat cacatctgga gcgatgaatc gaagttcaat
541 atgttcggaa ctgatggtat tcagtggatt cgacgtccca ttggctccag gtatgctcca
601 cagtaccaat gtccaactgt gaaacatgga ggtggatctg tgatggtttg gggatgcttc
661 tccgacactt ctatgggacc attgaagaga atcgttggaa ccatggatcg atatgtgtac
721 gaagacatcc tggagaacac aatgagacca tgggcaagag caaatttggg ccgatcgtgg
781 gtgttccaac aggacaatga cccgaagcat acttcgggtc atgtcgccaa ttggttcaga
841 cgtcgccgtg tgaacctcct agaatggcca agtcaatctc cagacttgaa tcccatcgag
901 catatgtggg aggagctgga acgccgcctc aaaggagtca gagcatccaa tgccaatcaa
961 aagtttgctc aactcgaagc tgcttggaag agtatcccga tgacggtggt tcagacgctc
1021 ctggagtcga tgccacgtag atgcaaggct gttatcgatg cgaaaggata cccaacgaaa
1081 tattaaatca ctttttattg ttacctttat tttgtttttg acctccggtg tttcttgagc
1141 ttctttgtat agatctccaa aaatgtcatt ttcatgaatt ttcgaaaaaa attaattttc
1201 aaaaaaattg tagcagaata ttaaaaccaa cttagcctaa aagtttttga tagtgctgaa
1261 aaaatcttac caaaaattcg gattgaaaag ttgagttttc aaaaagttat cttcaaaaaa
1321 caagttgtcg cattctttat ggccagtact g
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS CELTCB15 989 bp ds-DNA INV 18-MAY-1991
DEFINITION Caenorhabditis briggsae TCb1(#5) repetitive element
ACCESSION X54217
KEYWORDS inverted repeat.
SOURCE Caenorhabditis briggsae DNA.
ORGANISM Caenorhabditis briggsae
Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria;
Spirurida; Spirurina; Filarioidea; Filariidae.
REFERENCE 1 (bases 1 to 989)
AUTHORS Harris,L.J., Prasad,S. and Rose,A.M.
TITLE Isolation and sequence analysis of caenorhabditis briggsae
repetitive elements related to the caenorhabditis elegans
transposon Tc1
JOURNAL J. Mol. Evol. 30, 359-369 (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 989)
AUTHORS Harris,L.J.
JOURNAL Unpublished (1991)
STANDARD full automatic
COMMENT For TCb1#10 see CBTCB110;
From EMBL 26 entry CBTCB15; dated 23-JAN-1991.
FEATURES Location/Qualifiers
repeat_unit 1..80
/rpt_type=inverted
misc_feature 530..530
/note="position equivalent to Tcl ORF1 start site"
misc_feature 812..>989
/note="put. 627bp internal deletion from progenitor"
repeat_unit 910..989
/rpt_type=inverted
BASE COUNT 314 a 180 c 185 g 310 t
ORIGIN
1 cagtactggc cataaagaat gcgacaactt gttttttgac gataactttt tgaaaactca
61 acttttcaac tcgaattttt tactgtagac acattggaaa gttacgaaaa cttgcgtact
121 tggaaattgc atcatcttgc aaacaaaatt ttttttcaat tgttttcatt ttttttttca
181 ttttgcatat ttttcatgat ttttggtttt tttaaataaa gttgaaagac aactaattgg
241 aattagtttt agttgattat tttattgttt ttcagatatg gttagaccat tcggaaaaaa
301 tccttctctg tggacgagcg aaaaagcatt gtgcgtggtc atgaactcgg cgcgcatccg
361 aagatacttg caactcagtt tagttgttct tccagccaaa tttaccgtat tctgaagaaa
421 aatcgagatg atgtgaggtt tcaatcagct ttctcaacta aatttaacaa tttagaatgg
481 cgttgttcat cgccaatctc caggaagacc ccgaaccact tccagaaata tggatcggaa
541 cattttgcgc gcatgccgag aagatcctag acgcacatct acgggtattc aactttctgt
601 gacgtctcca aatgaaccgg taccatcgag aagaactatt agaagacgtt tgcaagttgc
661 tggactgcac ggacgaagac cagtcaaaaa accactcgtc agtttgaaaa accgaaaagc
721 tcgcgttgaa tgggctaaac agcacttgtc ctggggcccc cgtgagtggg caaatcacat
781 ctggagcgat gaatcgaagt tcaatatgtt cgtgaatttt cgaaaaaaat taattttcaa
841 aaaaattgta gcagaatatt aaaaccaact tagcctaaaa gtttttgata gtgctgaaaa
901 aatcttacca aaaattcgga ttgaaaagtt gagttttcaa aaagttatct tcaaaaaaca
961 agttgtcgca ttctttatgg ccagtactg
//