GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS CHIHIST 6271 bp ds-DNA INV 18-MAY-1991
DEFINITION Chironomus thummi histone H1, H2A, H2B, H3, H4 genes with TFB1
insertion (foldback transposable element)
ACCESSION X56335
KEYWORDS histone H1; histone H2A; histone H2B; histone H3; histone H4;
transposable element.
SOURCE Chironomus thummi DNA.
ORGANISM Chironomus thummi
Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
Chironomidae.
REFERENCE 1 (bases 1 to 6271)
AUTHORS Schmidt,E.R.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1058 to 6271)
AUTHORS Hankeln,T. and Schmidt,E.R.
TITLE New foldback transposable element TFB1 found in histone genes of
the midge Chironomus thummi.
JOURNAL J. Mol. Biol. 215, 477-482 (1990)
STANDARD full automatic
COMMENT *source: strain=sub-species thummi; library=C++; clones=pK6-11;
**map: chromosome=II; map position=D3c;
From EMBL 26 entry CTHIST; dated 17-JAN-1991.
FEATURES Location/Qualifiers
transposon 10..1057
/standard_name="TFB1"
stem_loop complement(1249..1264)
/note="conserved 3' hairpin"
CDS complement(1308..1718)
/gene="histone H3"
/codon_start=1718
mat_peptide complement(1311..1718)
/gene="histone H3"
TATA_signal complement(1794..1799)
TATA_signal 2044..2049
mat_peptide 2133..2441
/gene="histone H4"
CDS 2133..2444
/gene="histone H4"
/codon_start=2133
stem_loop 2482..2497
/note="conserved 3' hairpin"
stem_loop complement(3075..3090)
/note="conserved 3' hairpin"
CDS complement(3123..3500)
/gene="histone H2A"
/codon_start=3500
mat_peptide complement(3126..3500)
/gene="histone H2A"
TATA_signal complement(3594..3599)
TATA_signal 3661..3666
mat_peptide 3734..4108
/gene="histone H2B"
CDS 3734..4111
/gene="histone H2B"
/codon_start=3734
stem_loop 4145..4160
/note="conserved 3' hairpin"
TATA_signal 5259..5264
mat_peptide 5331..6023
/gene="histone H1"
CDS 5331..6026
/gene="histone H1"
/codon_start=5331
stem_loop 6085..6102
/note="conserved 3' hairpin"
BASE COUNT 2223 a 976 c 1046 g 2026 t
ORIGIN
1 aacgaattca cctcaatcta aaattcctaa aatgcagcta ccctaatatg cagatagtac
61 tgccaagatg cagatggtac tgctaaagtg cagatgaaaa ttattttccc taaaatgcag
121 atgaaatgct gttgctttaa aaaaaggtat aatgcagatg atttttaacg tataaagtgc
181 agataaaatg ctgcccaaat gtagatcgta taataaaatt aaaatgcatc atatttgata
241 ttataaaaat tatagtaaac ttttgtttta aaaaattcgt aagaaaggaa aggtttttgc
301 tttttctgaa gcaacgacta ttcctacctt gcccaaaaac tatacagcta ttctatagag
361 cagcacggat caaatgtaaa aaactagaag tctctacaat gtctcgttat tgagatttca
421 tgctgattaa ctttcatgct tgtttgctta cagaaagcgt attttgcgat tttctcaatt
481 tgaaatctgt tgtttgaaaa tgatgtaaaa ttttaggcac aaactttact tctgagactt
541 tttaaaacca attttgcttc gttttctcac aaaatgcgaa aaactgatgt ttgcatctga
601 acaaaaccaa tagattcaca cgtgaaaacg gtgtgaattt aaaaaataca tttgtagata
661 tatcaatgaa agctgacaaa gttttaacaa aattcacaaa aaatattcgt gagtgacgct
721 taattaaatt gattttctga cataacgcct taactttagg aagtaagttc tatgtcaaaa
781 gaaagcaatt tttgtttttt acaagatata ataactttga aatttgtcac tattgtggtt
841 tcggagatat ttaagaaacc aaatcatcac tcacgaataa tttttttttt cgtaggggct
901 caaaaaatta atatccaacg ttaaattatc tgcattatac cttttttaaa gcaacagcat
961 ttcatctgca ttttagggaa aataaatttc atctgcactt tagcagtacc atctgcatat
1021 tagggtagct gcattttagg aatttctaga ttggggtaac gaatttctgt gttataatag
1081 aaatgacgcc gtttaaaatg caatgatggc gtcattttga gagagtttac aggttagctt
1141 tatagaatga tttttattgg actagaatgt tttaagctac aagaaaagta ttgttgagat
1201 cataaaattg aataaaaaat ttcttctttt catgttaata tttttggtgg tcttgaaaaa
1261 gaccgttcta atgaaatatg aaagcttgtt gttgatgatg atggaaatta agcacgttca
1321 ccacgaatac gacgtgcaag ttggatatcc tttggcataa ttgtgacacg cttggcatgg
1381 atggcacaca agtttgtatc ttcgaataat ccgacgaggt aagcttcaga tgcttcttgt
1441 aaagccataa ctgctgatga ttggaaacgt aagtcagtct tgaaatcctg agcgatttca
1501 cgaacaagac gttggaatgg caatttacgg atcaacaatt cagtcgattt ctggtaacga
1561 cggatttcac gaagagcgac tgtacctgga cgataacgat gtggcttctt aactcctcca
1621 gttgctggtg ctgatttacg tgcagctttt gtggccaatt gtttacgtgg tgcttttcca
1681 ccagttgatt tacgagctgt ctgctttgta cgagccattt tagtttaata cttttactgt
1741 tttcaatttg aaatacaaac gagatatgat gcgagagcga gaaatgagtc ccctttatat
1801 atgattctta tggagcgaat atatgttttt gtggtgggga gagacaaatt caggggaaat
1861 gagaaaaact tgataattta actggatatt ctataattta attaattaaa tgttttgaaa
1921 tattttcgta aagttttgtg ttgtttcaaa ttttaagaat taggtaaatt aaattaatga
1981 aacttgacaa aacgggataa attcagataa aaagtgtgag agaggggaag acgagagaat
2041 gtatataaag agagtgaatt tcatgtattg gcatcattca agttttaccg tttctcgtgt
2101 aaagaagtaa gaatacaatt taaaaataca aaatgactgg acgaggtaaa ggaggcaaag
2161 gtttaggaaa aggaggcgca aagcgtcatc gtaaagttct tcgtgataac atccaaggaa
2221 tcacaaaacc agctattcgt cgtttagctc gtcgtggtgg tgtcaagcgt atctcaggct
2281 tgatctacga agaaactcgt ggggtcttga aagttttctt ggaaaatgtc atccgtgatg
2341 cagtcacata tactgaacac gctaagagaa agacagttac agctatggat gttgtctatg
2401 cattgaaacg tcaaggacgt actctctatg gtttcggagg ttaaatttct taccatcatc
2461 atatacaaat tacatcaaaa tggtcttttt caagaccgca atttaaattt attaagaaaa
2521 ttatttttaa cttattcctc ttgctacctt acttataaga ctttataaaa gattcctagc
2581 tcatgtacct gaatgaaata aattattatt atctaattct tagacttatg attttaattt
2641 tcaaaacttc gtttgaaaaa tgttgaaaat tggcatcgac atagatttct atatttagta
2701 ggtttattaa ttgttattat ctataatttt gaagcttttg attaattatt ttaaatttaa
2761 atcatgaaat aatatatttt taagaaaaat gttctgtaag ttatcaggca agcataatat
2821 ttcttttata ttgcagcata ttggatcctt tttatctttg tcttatgttt ttggatgctt
2881 acttatgaga aattgaaatt aattcttact tggagacctt aaaactagat ttgttttcac
2941 acattttaag gtaatttggt tctgtttgta cgattataaa cctgttttgt tattaaataa
3001 atctttaaac gtaaaattaa ttttagacta tgaatttttt aaaaattagt ttttcttcag
3061 aaattaaaat tggtcgccct aaaaaggacg gtttatagat gtttgaatgt tgattaatta
3121 atttaagctt tctttgattc agtcttcttt ggcaacaaga cagcttggat gtttggtaaa
3181 acaccacctt gtgcgattgt gactccagac aaaagtttgt tcaattcttc gtcattacgg
3241 attgccaatt gcaagtgacg tgggataatt cttgttttct tgttgtcacg agcagcatta
3301 cctgctaatt caagaacttc agcagctaag tattccataa cagcagctaa atatactgga
3361 gctccagcac caacacgttc accatagttt cctttacgga gaagacgatg aatacgacct
3421 actgggaatt gtaatccagc acggcttgaa cgtgactttg cctttgcctt aactttgcct
3481 cctttaccac ggcctgacat ttttttcaat agtttatttg aattgttaaa acgagaaagt
3541 ttaagaacca aagatgattc gatactgagt tggatattga caatgtgcag gtatttatac
3601 aaaaattgtg agcggggaac tataagaggc gtggcttatg ctacatggag atagaaaatg
3661 tataaagaga gaagaaaaag tgtagagagt catcagttgt attctgaatt tcattcaaac
3721 cacttcataa aaaatggcac caccaaaaac cagcggaaaa gctgcaaaga aagccggaaa
3781 ggcccaaaaa gcaatctcta aggatgacaa gaaaaagaga cgtcataagc gtaaggaatc
3841 atacgcaatc tacatcttca aagtcttgaa acaagtccat ccagacactg gtgtttcctc
3901 aaaggcaatg agcatcatga acagtttcgt caatgatatc ttcgaacgta ttgcagctga
3961 agcctcaaga ttggctcact acaacaaacg ctcaacaatc acaagtcgcg agatccaaac
4021 tgctgttcgt ttactcttac ctggtgaatt ggctaagcac gctgtctcag aaggaacaaa
4081 agccgtcaca aaatacacat catccaagta aattgcgttc tatgctgcat cgcaaatcca
4141 aaatggtctt tttcaagacc gcaaaatatt ttatgaaaaa gaaaaagatt taatatctaa
4201 tgagactgac taatttaatt ttctaggtac caaactttct cttgtaaata aaactagcta
4261 taaatgactt tgtgtatttt taaattattg taaaacattt ttaaaactat tacctatgtt
4321 aaataaattt taattaaaat tggttcaata aacgaatatt acaaaaaaca taaaatctta
4381 ctcttatttc ttatttctag gtttaaaatt cttaaatgag acaattttct ttgttcttga
4441 taattctgat gacgcatttt atttgaatag atagatttct ctgacattaa cattacacta
4501 gtatgataat ttcttaaata aaataaattg aataaattaa aatttgaact tacataagtt
4561 aaattaattt cggactcagt ctttgtacac aaatttctat ttagcctttt cttcattcaa
4621 taaatctggt attttgtatg aagaatttta taaattaatt taattaagat tggaactttc
4681 aatttgtcaa aattgagttt aattttatta ttttgataaa tttcttcaat ttggcattta
4741 attaaatttc attagatatg attaagttaa agttaaactc attaaatttt atcgcataaa
4801 tttccaagca ctgagtgtcc aacattattt cttttggtac ttaatcgtac ttaagttcat
4861 taacattttg agattttgac ttaattttat gaatctacaa taaataaact ttcatttatt
4921 gaaaatttca tcaaaataag taattcggtt caaaagttat tgaagattaa ttaaagaaaa
4981 ttccaaattt tctcacaaat tttgacttta actgcttttt ttgagccatt gttaatttaa
5041 ttaaatataa ttaaaatcat catttgggag actttagatt gtaaaataag attccagaaa
5101 gttttttgat catttagtaa aagtttgtac aataattaac aaattttgag atcgacgcag
5161 aagtttacga gggaaaattt tccaacaaaa attgagcgcg aggcttcgtt tccattcaca
5221 tcgcattgtt aagggaccct cgcatttcta tatttcacat aatattttca atttgaaaat
5281 tatttttaca caagtaaagc aagaaaaata aaaaaataat caaaacaaaa atgtctgacc
5341 cagcaataga agtcgcacca gttccagttg cttcaccagc aaaggcaaag aaagagaaga
5401 aaccaaaatc tgataagcca aaaaaaccaa aggcaccaag aactcatcca ccagtcagtg
5461 atatgattgt caatgccatc aagacattga aagaacgagg tggttcatca gttcaagcta
5521 tcaagaaatt ccttgttgct caatacaaag ttgatactga taaattgtca ccattcatca
5581 agaaatactt gaaatcagcc gttgaaaagg gacaattgtt gcaaacaaaa ggtaaaggag
5641 catcaggatc attcaaatta ccagcagcag ccaagaaaga aaaggttgta aagaaggtaa
5701 caaagaaagt cactgagaag aagccaaaga aggctgtgtc taagccaaag actggtgaga
5761 agaaagtcaa gaagacaatt gccaagaaac caaaagtagc ttcagccaca aagatcaaga
5821 agcctgttgc aaagaccaca aagaagcctg cagcagctaa gccaacaaaa aaagtcgcag
5881 caaagcctaa agctgcacca aagcccaaag ctgcaccaaa accaaaagtt gccaagccaa
5941 agaaggcagc agcaccaaaa gcaaagaaac cagcagcaga aaagaagcca aaagctgcca
6001 aaaaaccatc agcaaagaaa gcttaaattt gacatcaatt aatatacata ttataattgc
6061 tgatattcag cagtaacctc aaaatagtcc ttttcaggac tacaaaatct tattcgaaca
6121 aagaaaaatt aaattttgat tacaatttct actttctagc ggcatttttt gtttaataaa
6181 taaatattct gtgatattat ctctaaatat acgatttttg atttctgaat gctatgctta
6241 tgaatctaca tttaaaatca tcaacgaatt c
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