GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS DROCOPIA1 5146 bp ds-DNA INV 18-MAY-1991 DEFINITION Drosophila copia element from white-apricot allele ACCESSION X04456 KEYWORDS copia element; transposable element; unidentified reading frame. SOURCE Drosophila melanogaster DNA. ORGANISM Drosophila melanogaster Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae. REFERENCE 1 (bases 1 to 1130) AUTHORS Flavell,A.J., Levis,R., Simon,M.A. and Rubin,G.M. TITLE The 5' termini of RNAs encoded by the transposable element copia JOURNAL Nucleic Acids Res. 9, 6279-6291 (1981) STANDARD full automatic REFERENCE 2 (bases 2302 to 2934) AUTHORS Fouts,D.L., Manning,J.E., Fox,G.M. and Schmid,C.W. TITLE a complex repeated dna sequence within the drosophila transposable element copia JOURNAL Nucleic Acids Res. 9, 7053-7064 (1981) STANDARD full automatic REFERENCE 3 (bases 1 to 5146) AUTHORS Mount,S.M. and Rubin,G.M. TITLE Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral elements JOURNAL Mol. Cell. Biol. 5, 1630-1638 (1985) STANDARD full automatic REFERENCE 4 (bases 1 to 5146) AUTHORS Ashburner,M. JOURNAL Unpublished (1986) STANDARD full automatic COMMENT From EMBL 26 entry DMCOPIA1; dated 21-APR-1990. FEATURES Location/Qualifiers misc_feature 1..276 /note="5' LTR" variation 292..292 /note="G in [2]" repeat_region 354..375 /note="direct repeat 1" repeat_region 382..403 /note="direct repeat 1" CDS 432..4658 /note="ORF" /codon_start=432 variation 575..575 /note="deletion in [2]" variation 2309..2309 /note="t in [3]" repeat_region 2589..2696 /note="direct repeat 2" variation 2596..2596 /note="c in [3]" repeat_region 2697..2804 /note="direct reepat 2" variation 2839..2839 /note="a in [3]" variation 2874..2874 /note="a in [3]" variation 2901..2901 /note="g in [3]" variation 2902..2902 /note="g in [3]" variation 2927..2927 /note="g in [3]" variation 2928..2928 /note="g in [3]" misc_feature 4872..5146 /note="3' LTR" BASE COUNT 1873 a 728 c 970 g 1575 t ORIGIN 1 tgttggaata tactattcaa cctacaaaaa taacgttaaa caacactact ttatatttga 61 tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc actcttttta 121 ttccttcttt ccttcttgta cgttttttgc tgtgagtagg tcgtggtgct ggtgttgcag 181 ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta tttatttatt 241 tattaagaaa ggaaatataa attataaatt acaacaggtt atgggcccag tccatgccta 301 ataaacaatt aaattgtgaa ttaaagattg tgaaaataaa ttgtgaaata gcattttttc 361 acattcttgt gaaatagctt tttttttcac attcttgtga aattatttcc ttctcagaat 421 ttgagtgaaa aatggacaag gctaaacgta atattaagcc gtttgatggc gagaagtacg 481 cgatttggaa atttagaatt agggctcttt tagccgagca agatgtgctt aaagtagttg 541 atggtttaat gcctaaggag gtagatgact cctggaaaaa ggcagagcgt tgtgcaaaaa 601 gtacaataat agagtaccta agcgactcgt ttttaaattt cgcaacaagc gacattacgg 661 cgcgtcagat tcttgagaat ttggacgccg tttatcaacg aaaaagtttg gcgtcgcaac 721 tggcgctgcg aaaacgtttg ctttctctga agctatcgag tgagatgtca ctattaagcc 781 attttcatat ttttgacgaa cttataagtg aattgttggc agctggtgca aaaatagaag 841 agatggataa aatttctcat ctactgatca cattgccttc gtgttacgat ggaattatta 901 cagcgataga gacattatct gaagaaaatt tgacattggc gtttgtgaaa aatagattgc 961 tggatcaaga aattaaaatt aaaaatgacc acaacgatac aagcaagaaa gttatgaacg 1021 cgatcgtgca caacaataat aacacttata aaaataattt gtttaaaaat cgggtaacta 1081 aaccaaagaa aatattcaag ggaaattcaa agtataaagt caagtgtcac cactgtggca 1141 gagaaggcca cattaaaaaa gattgtttcc attataaaag aatattaaat aataaaaata 1201 aagaaaatga aaaacaagtt caaactgcaa catcacaggg cattgcgttt atggtaaaag 1261 aagtgaataa tacttcagtg atggacaact gcgggtttgt ccttgattct ggtgctagtg 1321 accatcttat aaatgatgag tcgctgtata ccgacagtgt ggaggttgtg cctccactta 1381 agattgcagt ggccaagcaa ggcgaattta tttatgccac taagcgtggt attgtccgac 1441 tacggaatga ccatgagatt acactggagg atgtactctt ttgtaaggaa gctgctggta 1501 atttgatgtc cgtaaagcgt ctccaagagg caggaatgtc gatcgaattt gacaaaagcg 1561 gtgtaaccat ttcgaaaaat gggttaatgg ttgtcaaaaa ttcaggtatg ttaaacaatg 1621 tacctgtgat caattttcaa gcatattcta taaatgctaa gcataaaaat aattttcgtt 1681 tatggcatga gaggtttggc catataagcg atggcaaatt attagaaata aaacgaaaga 1741 atatgtttag tgatcaaagt cttctaaaca acttagagtt atcatgtgaa atttgtgaac 1801 cctgtttaaa tggtaaacag gcaagacttc cttttaaaca attgaaagat aagacccata 1861 ttaaaagacc actttttgta gtacactcag atgtctgtgg gcctattact ccagttactt 1921 tagatgataa aaattatttt gtgatctttg ttgatcagtt tacacattat tgtgtaactt 1981 atttaattaa atataaatct gatgtgttta gcatgtttca agattttgta gccaagagtg 2041 aagctcattt taatttaaag gttgtgtact tatacattga caatggtaga gaatacttgt 2101 caaatgagat gagacaattt tgtgttaaga aaggaatttc ttatcactta acagtgccac 2161 atacacctca gttaaatggt gtttctgaga gaatgataag aaccattacg gaaaaagctc 2221 gaaccatggt tagtggtgca aagctagata aaagcttttg gggcgaagca gtattaactg 2281 ctacttattt aatcaacaga attcctagca gagcacttgt tgatagttca aagaccccat 2341 atgagatgtg gcacaataag aagccatact taaaacattt gagagtgttt ggtgcaactg 2401 tttatgtgca tattaaaaac aaacaaggaa agtttgatga taaatcattt aaaagtattt 2461 ttgtgggcta tgaacccaat ggttttaagt tgtgggatgc tgtaaatgaa aaatttattg 2521 tcgcaagaga tgttgttgtc gatgaaacca atatggttaa ttctagagct gttaaatttg 2581 aaacagtgtt cctgaaagat agtaaggaaa gtgaaaataa aaattttcct aatgacagta 2641 cgaaaataat acaaacagag ttcccgaatg agagtaagga atgcgacaac atacaattcc 2701 tgaaagatag taaggaaagt gaaaataaaa attttccgaa tgacagtagg aaaataatac 2761 aaacagaatt cccgaatgag agtaaggaat gcgacaacat acaattcctg aaagatagta 2821 aggaaagtaa taaatatttt ctgaatgaga gtaagaaaag aaagcgagat gatcacctga 2881 atgaaagtaa gggatcaggc aacccgaatg agagtaggga aagtgaaaca gcagagcact 2941 taaaagaaat tggaattgat aatccaacta aaaatgatgg catagaaatt attaatagaa 3001 gaagtgagag attaaagact aagcctcaga tatcctataa tgaagaggat aacagtctaa 3061 ataaagttgt tctaaatgct cacactatat ttaacgatgt cccaaattca tttgatgaaa 3121 ttcaatatag ggatgataaa tcttcttggg aagaagccat caatacagag ttaaatgctc 3181 ataaaattaa taatacttgg acaattacaa aaaggcctga aaacaaaaat attgtagata 3241 gcagatgggt attttctgtt aaatataatg aacttggaaa tccaattaga tacaaagcta 3301 gattggttgc acgaggattc actcaaaaat accaaataga ctatgaagag acatttgctc 3361 ctgtagctag aatttcaagt ttccgattta tattgtcatt agtaatacag tataacttga 3421 aagtccatca aatggatgta aaaacagctt tcttaaatgg cacgttaaaa gaggaaattt 3481 atatgagact tcctcaaggt atatcgtgta atagtgacaa tgtgtgtaaa ttgaataagg 3541 caatttacgg actcaagcaa gcggctagat gctggtttga agtatttgag caagcattga 3601 aagagtgtga gtttgtaaac tcttcagttg atcgctgtat atatatttta gacaaaggta 3661 acatcaatga aaacatatat gtattattat atgtagatga tgtggttata gctacaggag 3721 atatgacaag aatgaataac ttcaaaaggt atttaatgga aaagtttagg atgactgacc 3781 taaatgaaat aaaacatttt attggaatta ggatagagat gcaggaagat aaaatctatt 3841 taagccaatc tgcatatgtt aaaaaaattt taagtaaatt taacatggaa aattgtaatg 3901 cagttagtac tcctttacct agtaaaataa attatgaatt acttaattca gatgaagact 3961 gcaatacccc atgccgtagc ctcataggat gtttaatgta cataatgctt tgtacacgcc 4021 cagatttaac tactgcagta aatatcttga gcagatatag tagcaaaaat aactccgaat 4081 tatggcagaa cttaaaaaga gttcttagat atttgaaggg cactatcgat atgaaattga 4141 tttttaaaaa gaacttggca tttgaaaata aaattattgg ttatgtggat tctgattggg 4201 ctggtagtga aattgataga aaaagtacaa cagggtattt attcaaaatg tttgatttta 4261 atctcatttg ttggaataca aagagacaga actcagtagc agcctcatca actgaagctg 4321 agtatatggc cctatttgaa gcctgtagag aagctctatg gcttaaattt ttattaacta 4381 gtattaacat taaactagaa aaccccatta aaatttacga agacaatcaa ggctgtatta 4441 gcatagcaaa caatccctca tgtcataaac gagctaaaca tattgatatt aaatatcatt 4501 ttgccagaga gcaagttcag aataatgtga tttgtcttga gtatattcct acagagaatc 4561 aactggctga catatttaca aaaccgttgc ctgctgcgag atttgtggag ttacgagaca 4621 aattgggttt gctgcaagac gaccaatcga atgctgaatg aaatttttta tatatatttt 4681 tcaaatttaa attcctgtaa acatattttg ttacaatgat ctgatcgggt ttttctgggt 4741 tttccccgta tcctcgcagc aaatgctgga tcagttaaca cttcccagaa tgcacaccac 4801 ccacatttga tagttactaa tgaatattat tgttatgttt ttaattatag acgttatttt 4861 tgagggggcg tgttggaata tactattcaa cctacaaaag taacgttaaa caacactact 4921 ttatatttga tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc 4981 actcttttta ttccttcttt ccttcttgta cgttttttgc tgtaagtagg tcgtggtgct 5041 ggtgttgcag ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta 5101 tttatttatt tattaagaaa ggaaatataa attataaatt acaaca //