GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS DROCOPIA1 5146 bp ds-DNA INV 18-MAY-1991
DEFINITION Drosophila copia element from white-apricot allele
ACCESSION X04456
KEYWORDS copia element; transposable element; unidentified reading frame.
SOURCE Drosophila melanogaster DNA.
ORGANISM Drosophila melanogaster
Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
REFERENCE 1 (bases 1 to 1130)
AUTHORS Flavell,A.J., Levis,R., Simon,M.A. and Rubin,G.M.
TITLE The 5' termini of RNAs encoded by the transposable element copia
JOURNAL Nucleic Acids Res. 9, 6279-6291 (1981)
STANDARD full automatic
REFERENCE 2 (bases 2302 to 2934)
AUTHORS Fouts,D.L., Manning,J.E., Fox,G.M. and Schmid,C.W.
TITLE a complex repeated dna sequence within the drosophila transposable
element copia
JOURNAL Nucleic Acids Res. 9, 7053-7064 (1981)
STANDARD full automatic
REFERENCE 3 (bases 1 to 5146)
AUTHORS Mount,S.M. and Rubin,G.M.
TITLE Complete nucleotide sequence of the Drosophila transposable element
copia: Homology between copia and retroviral elements
JOURNAL Mol. Cell. Biol. 5, 1630-1638 (1985)
STANDARD full automatic
REFERENCE 4 (bases 1 to 5146)
AUTHORS Ashburner,M.
JOURNAL Unpublished (1986)
STANDARD full automatic
COMMENT From EMBL 26 entry DMCOPIA1; dated 21-APR-1990.
FEATURES Location/Qualifiers
misc_feature 1..276
/note="5' LTR"
variation 292..292
/note="G in [2]"
repeat_region 354..375
/note="direct repeat 1"
repeat_region 382..403
/note="direct repeat 1"
CDS 432..4658
/note="ORF"
/codon_start=432
variation 575..575
/note="deletion in [2]"
variation 2309..2309
/note="t in [3]"
repeat_region 2589..2696
/note="direct repeat 2"
variation 2596..2596
/note="c in [3]"
repeat_region 2697..2804
/note="direct reepat 2"
variation 2839..2839
/note="a in [3]"
variation 2874..2874
/note="a in [3]"
variation 2901..2901
/note="g in [3]"
variation 2902..2902
/note="g in [3]"
variation 2927..2927
/note="g in [3]"
variation 2928..2928
/note="g in [3]"
misc_feature 4872..5146
/note="3' LTR"
BASE COUNT 1873 a 728 c 970 g 1575 t
ORIGIN
1 tgttggaata tactattcaa cctacaaaaa taacgttaaa caacactact ttatatttga
61 tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc actcttttta
121 ttccttcttt ccttcttgta cgttttttgc tgtgagtagg tcgtggtgct ggtgttgcag
181 ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta tttatttatt
241 tattaagaaa ggaaatataa attataaatt acaacaggtt atgggcccag tccatgccta
301 ataaacaatt aaattgtgaa ttaaagattg tgaaaataaa ttgtgaaata gcattttttc
361 acattcttgt gaaatagctt tttttttcac attcttgtga aattatttcc ttctcagaat
421 ttgagtgaaa aatggacaag gctaaacgta atattaagcc gtttgatggc gagaagtacg
481 cgatttggaa atttagaatt agggctcttt tagccgagca agatgtgctt aaagtagttg
541 atggtttaat gcctaaggag gtagatgact cctggaaaaa ggcagagcgt tgtgcaaaaa
601 gtacaataat agagtaccta agcgactcgt ttttaaattt cgcaacaagc gacattacgg
661 cgcgtcagat tcttgagaat ttggacgccg tttatcaacg aaaaagtttg gcgtcgcaac
721 tggcgctgcg aaaacgtttg ctttctctga agctatcgag tgagatgtca ctattaagcc
781 attttcatat ttttgacgaa cttataagtg aattgttggc agctggtgca aaaatagaag
841 agatggataa aatttctcat ctactgatca cattgccttc gtgttacgat ggaattatta
901 cagcgataga gacattatct gaagaaaatt tgacattggc gtttgtgaaa aatagattgc
961 tggatcaaga aattaaaatt aaaaatgacc acaacgatac aagcaagaaa gttatgaacg
1021 cgatcgtgca caacaataat aacacttata aaaataattt gtttaaaaat cgggtaacta
1081 aaccaaagaa aatattcaag ggaaattcaa agtataaagt caagtgtcac cactgtggca
1141 gagaaggcca cattaaaaaa gattgtttcc attataaaag aatattaaat aataaaaata
1201 aagaaaatga aaaacaagtt caaactgcaa catcacaggg cattgcgttt atggtaaaag
1261 aagtgaataa tacttcagtg atggacaact gcgggtttgt ccttgattct ggtgctagtg
1321 accatcttat aaatgatgag tcgctgtata ccgacagtgt ggaggttgtg cctccactta
1381 agattgcagt ggccaagcaa ggcgaattta tttatgccac taagcgtggt attgtccgac
1441 tacggaatga ccatgagatt acactggagg atgtactctt ttgtaaggaa gctgctggta
1501 atttgatgtc cgtaaagcgt ctccaagagg caggaatgtc gatcgaattt gacaaaagcg
1561 gtgtaaccat ttcgaaaaat gggttaatgg ttgtcaaaaa ttcaggtatg ttaaacaatg
1621 tacctgtgat caattttcaa gcatattcta taaatgctaa gcataaaaat aattttcgtt
1681 tatggcatga gaggtttggc catataagcg atggcaaatt attagaaata aaacgaaaga
1741 atatgtttag tgatcaaagt cttctaaaca acttagagtt atcatgtgaa atttgtgaac
1801 cctgtttaaa tggtaaacag gcaagacttc cttttaaaca attgaaagat aagacccata
1861 ttaaaagacc actttttgta gtacactcag atgtctgtgg gcctattact ccagttactt
1921 tagatgataa aaattatttt gtgatctttg ttgatcagtt tacacattat tgtgtaactt
1981 atttaattaa atataaatct gatgtgttta gcatgtttca agattttgta gccaagagtg
2041 aagctcattt taatttaaag gttgtgtact tatacattga caatggtaga gaatacttgt
2101 caaatgagat gagacaattt tgtgttaaga aaggaatttc ttatcactta acagtgccac
2161 atacacctca gttaaatggt gtttctgaga gaatgataag aaccattacg gaaaaagctc
2221 gaaccatggt tagtggtgca aagctagata aaagcttttg gggcgaagca gtattaactg
2281 ctacttattt aatcaacaga attcctagca gagcacttgt tgatagttca aagaccccat
2341 atgagatgtg gcacaataag aagccatact taaaacattt gagagtgttt ggtgcaactg
2401 tttatgtgca tattaaaaac aaacaaggaa agtttgatga taaatcattt aaaagtattt
2461 ttgtgggcta tgaacccaat ggttttaagt tgtgggatgc tgtaaatgaa aaatttattg
2521 tcgcaagaga tgttgttgtc gatgaaacca atatggttaa ttctagagct gttaaatttg
2581 aaacagtgtt cctgaaagat agtaaggaaa gtgaaaataa aaattttcct aatgacagta
2641 cgaaaataat acaaacagag ttcccgaatg agagtaagga atgcgacaac atacaattcc
2701 tgaaagatag taaggaaagt gaaaataaaa attttccgaa tgacagtagg aaaataatac
2761 aaacagaatt cccgaatgag agtaaggaat gcgacaacat acaattcctg aaagatagta
2821 aggaaagtaa taaatatttt ctgaatgaga gtaagaaaag aaagcgagat gatcacctga
2881 atgaaagtaa gggatcaggc aacccgaatg agagtaggga aagtgaaaca gcagagcact
2941 taaaagaaat tggaattgat aatccaacta aaaatgatgg catagaaatt attaatagaa
3001 gaagtgagag attaaagact aagcctcaga tatcctataa tgaagaggat aacagtctaa
3061 ataaagttgt tctaaatgct cacactatat ttaacgatgt cccaaattca tttgatgaaa
3121 ttcaatatag ggatgataaa tcttcttggg aagaagccat caatacagag ttaaatgctc
3181 ataaaattaa taatacttgg acaattacaa aaaggcctga aaacaaaaat attgtagata
3241 gcagatgggt attttctgtt aaatataatg aacttggaaa tccaattaga tacaaagcta
3301 gattggttgc acgaggattc actcaaaaat accaaataga ctatgaagag acatttgctc
3361 ctgtagctag aatttcaagt ttccgattta tattgtcatt agtaatacag tataacttga
3421 aagtccatca aatggatgta aaaacagctt tcttaaatgg cacgttaaaa gaggaaattt
3481 atatgagact tcctcaaggt atatcgtgta atagtgacaa tgtgtgtaaa ttgaataagg
3541 caatttacgg actcaagcaa gcggctagat gctggtttga agtatttgag caagcattga
3601 aagagtgtga gtttgtaaac tcttcagttg atcgctgtat atatatttta gacaaaggta
3661 acatcaatga aaacatatat gtattattat atgtagatga tgtggttata gctacaggag
3721 atatgacaag aatgaataac ttcaaaaggt atttaatgga aaagtttagg atgactgacc
3781 taaatgaaat aaaacatttt attggaatta ggatagagat gcaggaagat aaaatctatt
3841 taagccaatc tgcatatgtt aaaaaaattt taagtaaatt taacatggaa aattgtaatg
3901 cagttagtac tcctttacct agtaaaataa attatgaatt acttaattca gatgaagact
3961 gcaatacccc atgccgtagc ctcataggat gtttaatgta cataatgctt tgtacacgcc
4021 cagatttaac tactgcagta aatatcttga gcagatatag tagcaaaaat aactccgaat
4081 tatggcagaa cttaaaaaga gttcttagat atttgaaggg cactatcgat atgaaattga
4141 tttttaaaaa gaacttggca tttgaaaata aaattattgg ttatgtggat tctgattggg
4201 ctggtagtga aattgataga aaaagtacaa cagggtattt attcaaaatg tttgatttta
4261 atctcatttg ttggaataca aagagacaga actcagtagc agcctcatca actgaagctg
4321 agtatatggc cctatttgaa gcctgtagag aagctctatg gcttaaattt ttattaacta
4381 gtattaacat taaactagaa aaccccatta aaatttacga agacaatcaa ggctgtatta
4441 gcatagcaaa caatccctca tgtcataaac gagctaaaca tattgatatt aaatatcatt
4501 ttgccagaga gcaagttcag aataatgtga tttgtcttga gtatattcct acagagaatc
4561 aactggctga catatttaca aaaccgttgc ctgctgcgag atttgtggag ttacgagaca
4621 aattgggttt gctgcaagac gaccaatcga atgctgaatg aaatttttta tatatatttt
4681 tcaaatttaa attcctgtaa acatattttg ttacaatgat ctgatcgggt ttttctgggt
4741 tttccccgta tcctcgcagc aaatgctgga tcagttaaca cttcccagaa tgcacaccac
4801 ccacatttga tagttactaa tgaatattat tgttatgttt ttaattatag acgttatttt
4861 tgagggggcg tgttggaata tactattcaa cctacaaaag taacgttaaa caacactact
4921 ttatatttga tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc
4981 actcttttta ttccttcttt ccttcttgta cgttttttgc tgtaagtagg tcgtggtgct
5041 ggtgttgcag ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta
5101 tttatttatt tattaagaaa ggaaatataa attataaatt acaaca
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