GenBank-Updates@genbank.bio.net (05/09/91)
LOCUS SUSHISHA14 397 bp ds-DNA INV 09-MAY-1991
DEFINITION Sea urchin (S.purpuratus) histone H1-H4 spacer inverted repeat.
ACCESSION K01794
KEYWORDS repetitive sequence.
SOURCE Sea urchin (S.purpuratus; 7N) sperm DNA, clone 7N32L.
ORGANISM Strongylocentrotus purpuratus
Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa;
Echinoidea; Echinacea; Echinoida; Strongylocentrotidae.
REFERENCE 1 (bases 1 to 397)
AUTHORS Vitelli,L. and Weinberg,E.S.
TITLE An inverted sea urchin histone gene sequence with breakpoints
between TATA boxes and mRNA cap sites
JOURNAL Nucleic Acids Res. 11, 2135-2153 (1983)
STANDARD simple staff_review
COMMENT [Nucleic Acids Res. 11, 2135-2153 (1983)] reports a sea urchin
histone gene fragment containing inverted
regions of the normal repeat. Analysis of this fragment indicates
that the H1-H4 spacer of one repeat is situated alongside the
inverted H2A-H1 spacer of another repeat. The breakpoints in the
original duplexes were found to be witin 4-6 bp of the H4 mRNA
capsite and 8-10 bp of the H1 mRNA capsite in the standard repeat.
FEATURES Location/Qualifiers
repeat_region 1..247
/note="inverted repeat a"
repeat_region 248..397
/note="inverted repeat b"
BASE COUNT 93 a 113 c 102 g 89 t
ORIGIN 1 bp upstream of XhoI site.
1 ctcgagcatt caacacaggc ctctctacat aaatgcatgt aataatgcta gcgaatactc
61 gccacgaggg ggcgcactcg aatggggagt ctccgcactc cagtcccgca taccgaatga
121 tgccgaatct cgtcacccaa gtccgcaatg gtgtaacaat actcgctgca atccggttga
181 ggctcggcaa cgccatcaat ataaggcatt gttgcgtacg tgggaggaga cagtcccggg
241 tcgtccgcgg acgacccggg actgtctcct cccacgtacg caacaatgcc ttatattgat
301 tgcggagact ccccattcga gtgcgccccc tcgtggcgag tattcgctag cattattaca
361 tgcatttatg tagagaggcc tgtgttgaat gctcgag
//GenBank-Updates@genbank.bio.net (05/09/91)
LOCUS SUSHISHA1A 453 bp ds-DNA INV 09-MAY-1991
DEFINITION Sea urchin (S.purpuratus) histone H1-alpha gene, 5' end.
ACCESSION X04523 M10476
KEYWORDS histone; histone H1.
SOURCE S.purpuratus embryo DNA.
ORGANISM Strongylocentrotus purpuratus
Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa;
Echinoidea; Echinacea; Echinoida; Strongylocentrotidae.
REFERENCE 1 (bases 345 to 453)
AUTHORS Sures,I., Levy,S. and Kedes,L.H.
TITLE Leader sequences of Strongylocentrotus purpuratus histone mRNAs
start at a unique heptanucleotide common to all five histone genes
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77, 1265-1269 (1980)
STANDARD simple automatic
REFERENCE 2 (bases 1 to 344)
AUTHORS Knowles,J.A. and Childs,G.J.
TITLE Comparison of the late H1 histone genes of the sea urchins
Lytechinus pictus and Strongelocentrotus purpuratus
JOURNAL Nucleic Acids Res. 14, 8121-8133 (1986)
STANDARD simple automatic
COMMENT
EMBL features not translated to GenBank features:
key from to description
SITE 294 315 complete USE II element
SITE 328 337 complete USE II element
SITE 332 337 pot. Sp1 transcription factor
binding site
PRM 379 382 pot. TATA-box
SITE 407 407 put. trancription start site
FEATURES Location/Qualifiers
CDS 445..>453
/note="histone H1"
/codon_start=445
BASE COUNT 141 a 69 c 127 g 116 t
ORIGIN
1 ggatattagg gtgaccatgc agggcaaaat attatctttt tagtcggcat attaatggga
61 aactatgaat atgcaatttc ccatgaattt caagaggggt gacgatcagg ggttgatggt
121 gttatcgcca tttgatttca tttttttctt caaattcata taatgattga gtacattata
181 cgtggtagga gaggatgaag aagaagaggg atgagaagaa gacggagaaa gagaagaagg
241 agaagggggt ggtggaataa gagcatgtat ggatggaaaa gaagggagaa aagtttcttt
301 aaacaaacac aaactggcaa tgcagtcatg ggggcggacg acccgggact gtctcctccc
361 acgtacgcaa caatgcctta tattgagcgt tgccgagccg atggttattc gttttgttaa
421 cctcccgacg caccgtatat caagatggct gag
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS1 788 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene for histone H4.
ACCESSION V01137
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 788)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT KST PMI.HISTONH4
From EMBL 26 entry PMHIS1; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 451..759
/note="reading frame"
/codon_start=451
BASE COUNT 180 a 158 c 198 g 129 t 123 others
ORIGIN
1 caacatatta gaggaaggga gagagagaga gagagagaga gagagagaga gggggggggg
61 gagggagaat tgcccaaaac actgtaaatg tagcgttaat gaacttttca tctcatcgac
121 tgcgcgtgta taaggatgat tataagcttt ttttcaattt acaggcacta cgttacattc
181 aaatccaatc aatcatttga atcaccgtcg caaaaggcag atgtaaactg tcaagttgtc
241 agattgtgtg cgcggcctcc agtgagctac ccaccgggcc gtcgcggagg ggcgcacctg
301 tgcgggaggg gtcatcggag ggcgatcgag cctcgtcatc caagtccgca tacgggtgac
361 aatacccccg ctcaccggga gggttggtca atcgctcagc gaaacgtcca gtcgtcagca
421 tcgcactaag actctctctc aatctccata atgtcaggcc gtggtaaagg aggcaagggg
481 ctcggaaagg gaggcgccaa gcgtcatcgc aaggtcctac gagacaacat ccagggcatc
541 accaagcctg caatccgccg actcnnnnnn nnnnnnnnnn nnnnnngaat ctctggtctt
601 atctacgagg agacacgagg ggtgctgaag gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
721 nnnnnnnnnn nnggccgaac actgtacggc ttcggcggct aagtgaagca gacttggcta
781 gaataacg
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS2 537 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene spacer between histones H4 and H2B
ACCESSION V01138
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 537)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT From EMBL 26 entry PMHIS2; dated 06-JUL-1989.
BASE COUNT 134 a 53 c 56 g 104 t 190 others
ORIGIN
1 gctgtaattg aacatgctat aatttgaaag acgattcatg ttgccccaaa ttttcgcata
61 gcattaatta tggttcattc gaagtacaag atagaattcg atttgtttgt agagaaagga
121 gaaagaagga aggaattaaa catatgaaat aagatagaaa aaacatcgtc acccgtacaa
181 ttactttgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
361 nnnnnnnnnn nnnnnnnntt agcataccca tctgacacta cattatgcct gtcaaagcaa
421 tggcaacgct tattttgaca tggcctgtta agatattaat aataaaataa taatgataat
481 aataatgttt atgtaataca tatgctaaaa tcgaccgtaa cagacctcat atcatta
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS3 751 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene for histone H2B.
ACCESSION V01139
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 751)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT taken from figure 6 of [1]. KST PMI.HISTONH2B
From EMBL 26 entry PMHIS3; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS <202..509
/note="reading frame (202 is 2nd base in codon)"
/codon_start=202
BASE COUNT 204 a 162 c 152 g 130 t 103 others
ORIGIN
1 tcgaatcccc cctgaatggc taacatttgc atacgcatcg cagcggaccg accccgctgt
61 ataaagagaa agggaaccca gggggcggca ctcacagtac caaagcattg ctcggacann
121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
181 nnnnnnnnnn nnnnnnnnnn nctagcggtg gcaagaagag gcataggaaa aggaaggaga
241 gctacggtat ctacatctac aaagtcctca agcaggttca ccctgacact ggtgtctcca
301 gccgggccat gacaatcatg aacagctttg tcaacgatat cttcgagcgg atcgccggcg
361 aagcctcccg tctcacccag tacaacaaga agtcaaccat cagtagccgg gagattcaga
421 ccgccgtgcg ccttcttctc ccaggagagt tggccaagca cgccgtgagt gaggggacca
481 aagcagtgac caagtacacc accgtcaagt aaacggttac acnnnnnnnn nnnnnnnnnn
541 nnggccacca aacatccaag aaagaattgt gtcataaatc agatgaagag agtagtcagc
601 tattacataa cacataaggg gtgcaaatta catataagca ccaccatgaa tgtatgatat
661 ataatcatag gtagtcatga tatagtttgg atcctacatc actcaaaatc ataggtaggt
721 ttttttttat tatccacatg acgaaggaac g
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS4 418 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene for histone H3.
ACCESSION V01140
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 418)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT SWISS-PROT; P02298; H3$PSAMI.
The sequence is taken from figure 5 of [1].
From EMBL 26 entry PMHIS4; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 5..412
/note="reading frame"
/codon_start=5
BASE COUNT 112 a 129 c 107 g 70 t
ORIGIN
1 aaccatggca cgaaccaagc agacggctcg caaatctaca ggaggtaaag ccccccgcaa
61 gcagctggca accaaggctg ccagaaagag tgccccagcc accggaggag taaagaagcc
121 tcatcgctac agacctggta cagtcgcatt gagagagatt cgtcgctacc agaagagcac
181 cgaacttctt atccgaaagc tacccttcca gcgcctggta cgtgagatcg ctcaggattt
241 caagaccgag ctacgtttcc agagctccgc tgttatggcc ctccaagagg caagcgaggc
301 ctacctggtc ggtctgttcg aggacaccaa tctgtgcgcc atccacgcca agagggtaac
361 catcatgccc aaggatatcc aactcgctcg tcgaatccgc ggagaacgtg cctagatc
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS6 688 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene for histone H1.
ACCESSION V01142
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 688)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT KST PMI.HISTONH1
From EMBL 26 entry PMHIS6; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 46..613
/note="reading frame"
/codon_start=46
BASE COUNT 129 a 125 c 110 g 84 t 240 others
ORIGIN
1 ggccgtcact tgttttgtta actccgctac gcaacgttta ccaagatgac tgacactgcc
61 aagaaagtta cccagaagaa gccggcggct cacccacctg ctgccgaaat ggtgactaca
121 gcaatcaaag agctcaagga acgcaagggg tcttctcgtc aagcaatcgc gaactacatc
181 aaggcccatt tcgatgtaga gatagatcaa cagctggtat tcatcaagaa ggccctgaga
241 tctggggtcg cgaagggcac gttggtccag acgaaaggca cgggggcatc gggatccatc
301 aagctnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
541 nnnnnatcct aaacctgcgg ccaagaaacc tgcggccaag aagcctgcgg ccaagaaggt
601 tgcaaaatcg aaatgatgtt gcacgtccta ctcgtgtcac cacaacacaa cggctctttt
661 cagagccacc acatttccac gtaagacc
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUPHIS5 737 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (P. miliaris) gene for histone H2A.
ACCESSION V01141
KEYWORDS histone.
SOURCE Psammechinus miliaris DNA.
ORGANISM Psammechinus miliaris
Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca;
Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha;
Galatheoidea; Porcellanidae.
REFERENCE 1 (bases 1 to 737)
AUTHORS Schaffner,W., Kunz,G., Daetwyler,H., Telford,J., Smith,H.O. and
Birnstiel,M.L.
TITLE Genes and spacers of cloned sea urchin histone DNA analysed by
sequencing
JOURNAL Cell 14, 655-671 (1978)
STANDARD full automatic
COMMENT SWISS-PROT; P02271; H2A$STRPU.
KST PMI.HISTONH2A
From EMBL 26 entry PMHIS5; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 327..698
/note="reading frame"
/codon_start=327
BASE COUNT 186 a 212 c 167 g 172 t
ORIGIN
1 gcacaaataa cgcttctcac tctttctttt aatttatctt tatctctttt tttttttttc
61 cgaggcagaa aagcagtgag caaaggccct aactctcggc tgctctaacg agccaccaac
121 agatggcggt attcatgaaa tcgaggtgcg ggcagcgtcc cgctgattgg acaattgtca
181 caatgccctc gctgaccggt ctctccgatc ccgacgtttg gtataaatag ccagcaaaaa
241 agataggtgg tcaaccattc aagccagcgc acatcgcttc gttcacaacc tcgcttcgct
301 ctcagctcgt taaccaacca accatcatgt ctggaagagg taaaagtgga aaggcccgta
361 ccaaggcaaa atctcgttca tcccgcgctg gtctccagtt cccagtggga cgtgttcacc
421 gatttctacg caaaggcaac tatgcaaaga gggtcggcgg tggggcacca gtctacatgg
481 ccgctgtctt ggagtacttg actgccgaaa ttctcgagct cgctggcaac gctgctcgcg
541 acaacaagaa atctaggatc attccccgtc atcttcaact tgccgtgcgc aacgacgaag
601 aactcaacaa gctcctcgga ggggtgacga tcgcccaagg tggtgtcctg cccaacatcc
661 aagccgtgct gcttcccaag aagacaggca aatcaagcta aatttgtttg ctacctcttg
721 caacctcaac aacggcc
//GenBank-Updates@genbank.bio.net (05/18/91)
LOCUS SUSACTI 177 bp ds-DNA INV 18-MAY-1991
DEFINITION Sea urchin (S. purpuratus) actin 2 gene intron following amino acid
121 (glutamine)
ACCESSION V01352
KEYWORDS actin.
SOURCE Strongylocentrotus purpuratus DNA.
ORGANISM Strongylocentrotus purpuratus
Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa;
Echinoidea; Echinacea; Echinoida; Strongylocentrotidae.
REFERENCE 1 (bases 1 to 177)
AUTHORS Schuler,M.A. and Keller,E.B.
TITLE The chromosomal arrangement of two linked actin genes in the sea
urchin S. purpuratus
JOURNAL Nucleic Acids Res. 9, 591-604 (1981)
STANDARD full automatic
COMMENT From EMBL 26 entry SPACTI; dated 06-JUL-1989.
FEATURES Location/Qualifiers
intron 1..>177
/note="intron"
BASE COUNT 54 a 55 c 39 g 29 t
ORIGIN
1 atcgagcacg gtatcgtcac caactgggac gatatggaga agatctggca tcacaccttc
61 tacaacgaac tccgtgttgc cccagaggag caccccgtcc tccttaccga ggctcccctc
121 aaccccaagg ccaacaggga aaagatgaca caggtaagaa caagcaaaat gtccatt
//