GenBank-Updates@genbank.bio.net (02/08/91)
LOCUS RHBRR16SB 264 bp ss-rRNA RNA 08-FEB-1991
DEFINITION Bradyrhizobium sp. (Lotus, NZP 2257) 16S ribosomal RNA (partial).
ACCESSION M55486
KEYWORDS 16S ribosomal RNA.
SOURCE Bradyrhizobium sp. (strain Lotus, NZP2257) ribosomal RNA.
ORGANISM Bradyrhizobium sp.
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae.
REFERENCE 1 (bases 1 to 264)
AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D.
TITLE Phylogeny of the phototrophic rhizobium BTAi1 by PCR-based
sequencing of a 16S rRNA gene segment
JOURNAL Unpublished (1990)
STANDARD full staff_entry
FEATURES Location/Qualifiers
rRNA 1..264
/gene="16S rRNA"
/partial
/product="16S ribosomal RNA"
BASE COUNT 73 a 58 c 81 g 52 t
ORIGIN
1 aggcttaaca catgcaagtc gagcgggcgt agcaatacgt cagcggcaga cgggtgagta
61 acgcgtggga acataccttt tggttcggaa caacacaggg aaacttgtgc taataccgga
121 taagccctta cggggaaaga tttatcgccg aaagattggc ccgcgtctga ttagctagtt
181 ggtagggtaa tggcctacca aggcgacgat cagtagctgg tctgagagga tgatcagcca
241 cattgggact gagacacggc ccaa
//GenBank-Updates@genbank.bio.net (02/08/91)
LOCUS RHBRR16SG 264 bp ss-rRNA RNA 08-FEB-1991
DEFINITION Bradyrhizobium sp. (Aeschynomene, BTAi1) 16S ribosomal RNA
(partial).
ACCESSION M55492
KEYWORDS 16S ribosomal RNA.
SOURCE Bradyrhizobium sp. (strain Aeschynomene, BTAi1) ribosomal RNA.
ORGANISM Bradyrhizobium sp.
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae.
REFERENCE 1 (bases 1 to 264)
AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D.
TITLE Phylogeny of the phototrophic rhizobium BTAi1 by PCR-based
sequencing of a 16S rRNA gene segment
JOURNAL Unpublished (1990)
STANDARD full staff_entry
FEATURES Location/Qualifiers
rRNA 1..264
/gene="16S rRNA"
/partial
/product="16S ribosomal RNA"
BASE COUNT 72 a 59 c 82 g 51 t
ORIGIN
1 aggcttaaca catgcaagtc gagcgggcgt agcaatacgt cagcggcaga cgggtgagta
61 acgcgtggga acgtaccttt tggttcggaa caacacaggg aaacttgtgc taataccgga
121 taagccctta cggggaaaga tttatcgccg aaagatcggc ccgcgtctga ttagctagtt
181 ggtagggtaa tggcctacca aggcgacgat cagtagctgg tctgagagga tgatcagcca
241 cattgggact gagacacggc ccaa
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS BRRNOD1 3997 bp ds-DNA BCT 22-MAY-1991
DEFINITION Bradyrhizobium sp.(strain ANU 289) nodulation genes nodDABC ( =
Parasponia).
ACCESSION X03720
KEYWORDS nodulation.
SOURCE Bradyrhizobium sp. (strain ANU 289).
ORGANISM Bradyrhizobium sp.
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae.
REFERENCE 1 (bases 1 to 3997)
AUTHORS Scott,K.F.
TITLE Conserved nodulation genes from the non-legume symbiont
Bradyrhizobium sp. (Parasponia)
JOURNAL Nucleic Acids Res. 14, 2905-2919 (1986)
STANDARD simple automatic
COMMENT
[1] enum. 9 to 4000.
Data kindly reviewed (05-JAN-1987) by K. Scott
EMBL features not translated to GenBank features:
key from to description
RBS 1772 1777 pot. rRNA binding site (nod K)
RBS 2220 2226 pot. rRNA binding site (nod A)
RBS 3527 3532 pot. rRNA binding site (nod C)
FEATURES Location/Qualifiers
CDS complement(355..1371)
/note="nodD protein (aa 1-338)"
/codon_start=1371
CDS 1781..2191
/note="ORF 1 (nod K) (aa 1-136)"
/codon_start=1781
CDS 2233..2865
/note="nodA protein (aa 1-210)"
/codon_start=2233
CDS 2862..3521
/note="nodB protein (gtg start codon; aa 1-219)"
/codon_start=2862
CDS 3539..>3997
/note="nodC protein (aa 1-153)"
/codon_start=3539
BASE COUNT 821 a 1185 c 1156 g 835 t
ORIGIN
1 gagctcgtca attccgacaa cactcgcaac tcaacctggt caaattgccg ccggcagacc
61 agcgtaggtg cctatcccgt catagccacg agttcgccca attcgcccca tcgacgtccg
121 ccagcgcatc gttgggaggc aaactacaac ctgacgcagt gtcgggttca agcgatttaa
181 ttgggttcgc taaaccatcg tactcgattt tcgcgcgtcc ttcgatgctg ccggaccttg
241 cttgcaggac aaggcactaa accgcacttt gcgagatcat tgcgcccacg agctgataag
301 ccctcgcaat ccatcgccgg atcgcgcgcg cattgcagcg tggccgcacg ggagttaaaa
361 tgaggaagcc ggccaagccg tcgaatgatt gattaggata tttttgcatc tgcgggggcg
421 tgaatctagc cgcgcctgcg gcgttggggg ctcccgatgt tcagatgcca tgttggatgc
481 ttcctccaac aatatccgcc gcatccaaat gctcgccgga tcggtgttgt ggaacgcggg
541 ccactgcacg gcctcggtga aagtgggcag gggaagcggt ggctccacaa tctgcagggg
601 catccgcttt tcgaagtgtc tggcgagacg taagggcatt gtccctatcc ggctcgtgtc
661 caacaatatg ggcggtatca gactaaagcc ctgcacaacg acctcgatgc gtcttttcaa
721 gccgtgctcg agcaaaaacc attcctcgag attgggcctc agcgcccgtc cgaactgggc
781 cgtaacatgc cccatagaat tgtatttctc gaatgtaagt ggtctcgata gctgcttgtt
841 cgtggggcat cccacgcata cgagagtctc gtcgaatagc gtcgctttgg gatgcgcact
901 cgacatgaac aattccggta gaatgagaaa atcgacttcg ccgcggcgga ggagctcact
961 aggttcatcg gaaaatggca gcagttcgaa ccgcaccgca ggcgcctcct gtgcgatacg
1021 atcgacaatt ctccgaaaaa atacgattgt catgaaatcg gagagaatga ccctgaagcg
1081 tcggctcgac tgagccgggt cgaacgcgtc ccgagaaatg atcgaaagtt ggatgtgcag
1141 cagggcctcg cgtaccggac ccgcaagcgc ctccgcgccg ggtgtcagga cgagctcgcg
1201 acctctcatc gtaaacaatt catcgcgaaa gtagctgcgc agccgcgcga tcgcagcgct
1261 catagcgggc tggctcaggt ttattttgcg cgcagccgct gtgagattgc gttccgtcat
1321 cagagcgtcg agcgcaacga gaaggtttag atctagtccc ttgaaccgca tgttgtgagt
1381 ctatccatcg tgtggatgta ttctatcgaa acaatcgatt ttaccagatt gcggaatgtt
1441 ggatagcaaa catcagtttg gaaaataaat taggcatacc acgatggctg ctggtcgtac
1501 gcgggctccg agaaagactc ctggggacgt gcaagcaccc gccgaatcag tttgggaaac
1561 ggatatcgct gccgcatgcg aattgcgcct cttcccggtg cgacgagcac gcgatgtgac
1621 gctaggaagg ccccgataaa ccttcgtatg cgtgttccaa ccctttccat atcggcggtt
1681 tacccgcgta cacttgagag cgtgctcagc ctcaccttag tgtcgcgacc aagcggcgtg
1741 cgcagattgc ggatgccaaa tatctccggc gactggccaa atggcgcgcc tgttcatcgc
1801 agttatcgca attcaaggcg cgtcgaagat gcatagaacc gaagttgatc tggtgccagt
1861 cgggtgtgtc ctcgatgagc tctcacgcat cgatggcctg ccccgcgatg cgacagcgcc
1921 gatcttgatc ttggacgagg cggagcccct tcatgctgca gacaggctcc gggcaatcgg
1981 atcgcttcct tgggacgtac gcgcatgttt cggccatggc attggccgga aagatgcgcg
2041 cgagatgcgc gatcgtcttg ccgccaacga agccgccatt ccgattcggt ctgctctcgc
2101 gcggtctgcg aggagagccg agcgcggatg ccgcatgcca gcgcatttca gattgatcac
2161 cggttcggca aatagcgagt ttcttacgtg accatctccg ctctcacgcc cactggcgca
2221 gggaagtacg ccatgaatat tgccgtgtcg cggtctgcgg aagagccttc cgcgcgcact
2281 caagtccagt ggagccttcg ctgggaaaac gagctgcagc tcgccgatca tgccgagctt
2341 gccgacttct tccgtaacag ctacgggccg accggtgcgt tcaatgcgca gccattcgaa
2401 ggtaatcgaa gttgggccgg tgcacggcct gaactccgcg caatcggtta cgacgcacgc
2461 ggcgtccgtg cgcacatcgg cctactacgc cgcttcatca agattgatgg cgtcgatctt
2521 ctcgtggccg aactcggact atatgccgtg cgtccggatc tcgaggggct tggaatcagc
2581 cactcaatgc gcgtgatgta tcctgcgctg cagcagcttg gggtgccgtt cggctttggt
2641 acggtccggc ccgcgcttga gaggcatctc accaggctgg tcggaaggca ggggttggca
2701 accctgatgt ctggcgttcg cgtgcgctcc acccagccgg atgtctaccc caatttgtcg
2761 ccgatccgta tcgaagacgt cctcgtggtg gtgttcccgc ttgaacgccc aataggcgag
2821 tggcctgccg gaacgattat cgatcggaac gggcccgagt tgtgaccgaa ttcatccccc
2881 tgttcgcggt gcggcgcaac tatggtgacg tcagcggaac tcgctcggtc tacttgacct
2941 tcgatgatgg gccaaacccc ttctgcacgc cggacgtcct cgatgtgctg acgcaacatc
3001 gggtgcctgc gacgttcttc gttatcggca cctacgtggc caatcaacct gaactcattc
3061 gacgaatggt cgccgaaggg cacgaggttg caaaccacac gatgacccat cccgacttgt
3121 ccagatgcga accagcagag gtacacgatg aggtgctaac ggcgagcagg gcgatacgtt
3181 cggcttgccc gcaggcgttg cccaggcaca tgcgggcacc ctacggcata tggacccaag
3241 acgtgcttgc tacgtcagcc aaggctggtc tcgcagccgt gcactggtcg gtcgatccga
3301 gagattgggc gcgccctggg gttgatcgca tcgtgagctc agtgctggcg gctattcgac
3361 cgggcgcaat tgtgctcctg cacgacggat atcctcccgg cgaggagaga tcgtgcacgg
3421 atgccacttc gcgcgatcag acggtgaggg cgctgtcata tctgattccg gcactccaac
3481 ggcgcgggtt cgaaatccat ccgcttcctc aacttcactg aacaaaactg gcacccccat
3541 ggacctgctc gctacaacca gcgccgtcgc cgtttcgtct tatgcgctgc tctcgaccgt
3601 ctacaagacg caagcgcttt acgctcggcc ggccagcgcc gcaccgctgc gggacgaccc
3661 cggacaagcc gaagtggctc tacccagcgt agatgtcatt gtaccctctt tcaacgagga
3721 cccaaacaca ctctctgaat gcctcgcgtc gattgcaagc caagactacg ctggaaagct
3781 gcaggtccat gtggtcgacg acggatccgc aaatcgcgat ctcgtggggc ctgtgcacaa
3841 aatctttgcg aacgatccga ggtttcgcat cattttgctg gccaagaacg tcggaaagcg
3901 caaggcgcag attgctgcga tacgcagctc ttccggcgat ctggtcctca acgtcgactc
3961 ggatacgata cttgccgctg acgtggtcac gaagctt
//