GenBank-Updates@genbank.bio.net (02/08/91)
LOCUS RHBRR16SB 264 bp ss-rRNA RNA 08-FEB-1991 DEFINITION Bradyrhizobium sp. (Lotus, NZP 2257) 16S ribosomal RNA (partial). ACCESSION M55486 KEYWORDS 16S ribosomal RNA. SOURCE Bradyrhizobium sp. (strain Lotus, NZP2257) ribosomal RNA. ORGANISM Bradyrhizobium sp. Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae. REFERENCE 1 (bases 1 to 264) AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium BTAi1 by PCR-based sequencing of a 16S rRNA gene segment JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..264 /gene="16S rRNA" /partial /product="16S ribosomal RNA" BASE COUNT 73 a 58 c 81 g 52 t ORIGIN 1 aggcttaaca catgcaagtc gagcgggcgt agcaatacgt cagcggcaga cgggtgagta 61 acgcgtggga acataccttt tggttcggaa caacacaggg aaacttgtgc taataccgga 121 taagccctta cggggaaaga tttatcgccg aaagattggc ccgcgtctga ttagctagtt 181 ggtagggtaa tggcctacca aggcgacgat cagtagctgg tctgagagga tgatcagcca 241 cattgggact gagacacggc ccaa //
GenBank-Updates@genbank.bio.net (02/08/91)
LOCUS RHBRR16SG 264 bp ss-rRNA RNA 08-FEB-1991 DEFINITION Bradyrhizobium sp. (Aeschynomene, BTAi1) 16S ribosomal RNA (partial). ACCESSION M55492 KEYWORDS 16S ribosomal RNA. SOURCE Bradyrhizobium sp. (strain Aeschynomene, BTAi1) ribosomal RNA. ORGANISM Bradyrhizobium sp. Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae. REFERENCE 1 (bases 1 to 264) AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium BTAi1 by PCR-based sequencing of a 16S rRNA gene segment JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..264 /gene="16S rRNA" /partial /product="16S ribosomal RNA" BASE COUNT 72 a 59 c 82 g 51 t ORIGIN 1 aggcttaaca catgcaagtc gagcgggcgt agcaatacgt cagcggcaga cgggtgagta 61 acgcgtggga acgtaccttt tggttcggaa caacacaggg aaacttgtgc taataccgga 121 taagccctta cggggaaaga tttatcgccg aaagatcggc ccgcgtctga ttagctagtt 181 ggtagggtaa tggcctacca aggcgacgat cagtagctgg tctgagagga tgatcagcca 241 cattgggact gagacacggc ccaa //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS BRRNOD1 3997 bp ds-DNA BCT 22-MAY-1991 DEFINITION Bradyrhizobium sp.(strain ANU 289) nodulation genes nodDABC ( = Parasponia). ACCESSION X03720 KEYWORDS nodulation. SOURCE Bradyrhizobium sp. (strain ANU 289). ORGANISM Bradyrhizobium sp. Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rhizobiaceae. REFERENCE 1 (bases 1 to 3997) AUTHORS Scott,K.F. TITLE Conserved nodulation genes from the non-legume symbiont Bradyrhizobium sp. (Parasponia) JOURNAL Nucleic Acids Res. 14, 2905-2919 (1986) STANDARD simple automatic COMMENT [1] enum. 9 to 4000. Data kindly reviewed (05-JAN-1987) by K. Scott EMBL features not translated to GenBank features: key from to description RBS 1772 1777 pot. rRNA binding site (nod K) RBS 2220 2226 pot. rRNA binding site (nod A) RBS 3527 3532 pot. rRNA binding site (nod C) FEATURES Location/Qualifiers CDS complement(355..1371) /note="nodD protein (aa 1-338)" /codon_start=1371 CDS 1781..2191 /note="ORF 1 (nod K) (aa 1-136)" /codon_start=1781 CDS 2233..2865 /note="nodA protein (aa 1-210)" /codon_start=2233 CDS 2862..3521 /note="nodB protein (gtg start codon; aa 1-219)" /codon_start=2862 CDS 3539..>3997 /note="nodC protein (aa 1-153)" /codon_start=3539 BASE COUNT 821 a 1185 c 1156 g 835 t ORIGIN 1 gagctcgtca attccgacaa cactcgcaac tcaacctggt caaattgccg ccggcagacc 61 agcgtaggtg cctatcccgt catagccacg agttcgccca attcgcccca tcgacgtccg 121 ccagcgcatc gttgggaggc aaactacaac ctgacgcagt gtcgggttca agcgatttaa 181 ttgggttcgc taaaccatcg tactcgattt tcgcgcgtcc ttcgatgctg ccggaccttg 241 cttgcaggac aaggcactaa accgcacttt gcgagatcat tgcgcccacg agctgataag 301 ccctcgcaat ccatcgccgg atcgcgcgcg cattgcagcg tggccgcacg ggagttaaaa 361 tgaggaagcc ggccaagccg tcgaatgatt gattaggata tttttgcatc tgcgggggcg 421 tgaatctagc cgcgcctgcg gcgttggggg ctcccgatgt tcagatgcca tgttggatgc 481 ttcctccaac aatatccgcc gcatccaaat gctcgccgga tcggtgttgt ggaacgcggg 541 ccactgcacg gcctcggtga aagtgggcag gggaagcggt ggctccacaa tctgcagggg 601 catccgcttt tcgaagtgtc tggcgagacg taagggcatt gtccctatcc ggctcgtgtc 661 caacaatatg ggcggtatca gactaaagcc ctgcacaacg acctcgatgc gtcttttcaa 721 gccgtgctcg agcaaaaacc attcctcgag attgggcctc agcgcccgtc cgaactgggc 781 cgtaacatgc cccatagaat tgtatttctc gaatgtaagt ggtctcgata gctgcttgtt 841 cgtggggcat cccacgcata cgagagtctc gtcgaatagc gtcgctttgg gatgcgcact 901 cgacatgaac aattccggta gaatgagaaa atcgacttcg ccgcggcgga ggagctcact 961 aggttcatcg gaaaatggca gcagttcgaa ccgcaccgca ggcgcctcct gtgcgatacg 1021 atcgacaatt ctccgaaaaa atacgattgt catgaaatcg gagagaatga ccctgaagcg 1081 tcggctcgac tgagccgggt cgaacgcgtc ccgagaaatg atcgaaagtt ggatgtgcag 1141 cagggcctcg cgtaccggac ccgcaagcgc ctccgcgccg ggtgtcagga cgagctcgcg 1201 acctctcatc gtaaacaatt catcgcgaaa gtagctgcgc agccgcgcga tcgcagcgct 1261 catagcgggc tggctcaggt ttattttgcg cgcagccgct gtgagattgc gttccgtcat 1321 cagagcgtcg agcgcaacga gaaggtttag atctagtccc ttgaaccgca tgttgtgagt 1381 ctatccatcg tgtggatgta ttctatcgaa acaatcgatt ttaccagatt gcggaatgtt 1441 ggatagcaaa catcagtttg gaaaataaat taggcatacc acgatggctg ctggtcgtac 1501 gcgggctccg agaaagactc ctggggacgt gcaagcaccc gccgaatcag tttgggaaac 1561 ggatatcgct gccgcatgcg aattgcgcct cttcccggtg cgacgagcac gcgatgtgac 1621 gctaggaagg ccccgataaa ccttcgtatg cgtgttccaa ccctttccat atcggcggtt 1681 tacccgcgta cacttgagag cgtgctcagc ctcaccttag tgtcgcgacc aagcggcgtg 1741 cgcagattgc ggatgccaaa tatctccggc gactggccaa atggcgcgcc tgttcatcgc 1801 agttatcgca attcaaggcg cgtcgaagat gcatagaacc gaagttgatc tggtgccagt 1861 cgggtgtgtc ctcgatgagc tctcacgcat cgatggcctg ccccgcgatg cgacagcgcc 1921 gatcttgatc ttggacgagg cggagcccct tcatgctgca gacaggctcc gggcaatcgg 1981 atcgcttcct tgggacgtac gcgcatgttt cggccatggc attggccgga aagatgcgcg 2041 cgagatgcgc gatcgtcttg ccgccaacga agccgccatt ccgattcggt ctgctctcgc 2101 gcggtctgcg aggagagccg agcgcggatg ccgcatgcca gcgcatttca gattgatcac 2161 cggttcggca aatagcgagt ttcttacgtg accatctccg ctctcacgcc cactggcgca 2221 gggaagtacg ccatgaatat tgccgtgtcg cggtctgcgg aagagccttc cgcgcgcact 2281 caagtccagt ggagccttcg ctgggaaaac gagctgcagc tcgccgatca tgccgagctt 2341 gccgacttct tccgtaacag ctacgggccg accggtgcgt tcaatgcgca gccattcgaa 2401 ggtaatcgaa gttgggccgg tgcacggcct gaactccgcg caatcggtta cgacgcacgc 2461 ggcgtccgtg cgcacatcgg cctactacgc cgcttcatca agattgatgg cgtcgatctt 2521 ctcgtggccg aactcggact atatgccgtg cgtccggatc tcgaggggct tggaatcagc 2581 cactcaatgc gcgtgatgta tcctgcgctg cagcagcttg gggtgccgtt cggctttggt 2641 acggtccggc ccgcgcttga gaggcatctc accaggctgg tcggaaggca ggggttggca 2701 accctgatgt ctggcgttcg cgtgcgctcc acccagccgg atgtctaccc caatttgtcg 2761 ccgatccgta tcgaagacgt cctcgtggtg gtgttcccgc ttgaacgccc aataggcgag 2821 tggcctgccg gaacgattat cgatcggaac gggcccgagt tgtgaccgaa ttcatccccc 2881 tgttcgcggt gcggcgcaac tatggtgacg tcagcggaac tcgctcggtc tacttgacct 2941 tcgatgatgg gccaaacccc ttctgcacgc cggacgtcct cgatgtgctg acgcaacatc 3001 gggtgcctgc gacgttcttc gttatcggca cctacgtggc caatcaacct gaactcattc 3061 gacgaatggt cgccgaaggg cacgaggttg caaaccacac gatgacccat cccgacttgt 3121 ccagatgcga accagcagag gtacacgatg aggtgctaac ggcgagcagg gcgatacgtt 3181 cggcttgccc gcaggcgttg cccaggcaca tgcgggcacc ctacggcata tggacccaag 3241 acgtgcttgc tacgtcagcc aaggctggtc tcgcagccgt gcactggtcg gtcgatccga 3301 gagattgggc gcgccctggg gttgatcgca tcgtgagctc agtgctggcg gctattcgac 3361 cgggcgcaat tgtgctcctg cacgacggat atcctcccgg cgaggagaga tcgtgcacgg 3421 atgccacttc gcgcgatcag acggtgaggg cgctgtcata tctgattccg gcactccaac 3481 ggcgcgggtt cgaaatccat ccgcttcctc aacttcactg aacaaaactg gcacccccat 3541 ggacctgctc gctacaacca gcgccgtcgc cgtttcgtct tatgcgctgc tctcgaccgt 3601 ctacaagacg caagcgcttt acgctcggcc ggccagcgcc gcaccgctgc gggacgaccc 3661 cggacaagcc gaagtggctc tacccagcgt agatgtcatt gtaccctctt tcaacgagga 3721 cccaaacaca ctctctgaat gcctcgcgtc gattgcaagc caagactacg ctggaaagct 3781 gcaggtccat gtggtcgacg acggatccgc aaatcgcgat ctcgtggggc ctgtgcacaa 3841 aatctttgcg aacgatccga ggtttcgcat cattttgctg gccaagaacg tcggaaagcg 3901 caaggcgcag attgctgcga tacgcagctc ttccggcgat ctggtcctca acgtcgactc 3961 ggatacgata cttgccgctg acgtggtcac gaagctt //