GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS MZEZMRRNA 8862 bp ds-DNA ORG 22-MAY-1991 DEFINITION Zea mays chloroplast rRNA-operon ACCESSION Z00028 J01422 M10720 M19943 V00170 V00172 X01365 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; ribosomal DNA; ribosomal rna; transfer rna; transfer rna-ala; transfer rna-ile; transfer rna-val. SOURCE Chloroplast Zea mays DNA. ORGANISM Chloroplast Zea mays Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (sites) AUTHORS Schwarz,Z. and Koessel,H. TITLE Sequencing of the 3' terminal region of a 16S rRNA gene from Zea mays chloroplasts reveals homology with E. coli 16S rRNA JOURNAL Nature 279, 520-520 (1979) STANDARD full staff_review REFERENCE 2 (sites) AUTHORS Schwarz,Z. and Koessel,H. TITLE The primary structure of 16S rDNA from Zea mays chloroplast is homologous to E. coli 16S rRNA JOURNAL Nature 283, 739-739 (1980) STANDARD full staff_review REFERENCE 3 (sites) AUTHORS Edwards,K., Bedbrook,J., Dyer,T. and Koessel,H. TITLE 4.5S rRNA from Zea mays chloroplasts shows structural homology with the 3'end of prokaryotic 23S rRNA JOURNAL Biochem. Int. 2, 533-533 (1981) STANDARD full staff_review REFERENCE 4 (sites) AUTHORS Koch,W., Edwards,K. and Koessel,H. TITLE Sequencing of the 16S-23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes JOURNAL Cell 25, 203-213 (1981) STANDARD full staff_review REFERENCE 5 (bases 1 to 8862) AUTHORS Schwarz,Z., Koessel,H., Schwarz,E. and Bogorad,L. TITLE A gene coding for tRNA-Val is located near the 5' terminus of the 16S rRNA gene in the Zea mays chloroplast genome JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 4748-4748 (1981) STANDARD full automatic REFERENCE 6 (sites) AUTHORS Edwards,K. and Koesssel,H. TITLE The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and homology with E.coli 23S rDNA JOURNAL Nucleic Acids Res. 9, 2853-2869 (1981) STANDARD full staff_review REFERENCE 7 (sites) AUTHORS Strittmatter,G. and Koessel,H. TITLE Cotranscription and processing of 23S, 4.5S and 5S rRNA in chloroplasts from Zea mays JOURNAL Nucleic Acids Res. 12, 7633-7647 (1984) STANDARD full staff_review REFERENCE 8 (sites) AUTHORS Strittmatter,G., Gozdzicka-Jozefiak,a. and Koessel,H. TITLE Identification of an rRNA operon promoter from Zea mays chloroplasts which excludes the proximal tRNA-Val (GAC) from the primary transcript JOURNAL EMBO J. 4, 599-604 (1985) STANDARD full staff_review REFERENCE 9 (sites) AUTHORS Koessel,J. JOURNAL Unpublished (1986) STANDARD full staff_review COMMENT SWISS-PROT; P03938; YCTI$MAIZE. From EMBL 26 entry CHZMRRNA; dated 18-MAR-1991. FEATURES Location/Qualifiers tRNA 1212..1283 /note="tRNA-Val (GAC)" promoter 1361..1367 /note="-35 region" promoter 1385..1390 /note="-10 region" misc_feature 1397..1397 /note="transcriptional start of rRNA synthesis" rRNA 1514..3004 /note="16S ribosomal RNA" tRNA 3306..3342 /note="tRNA-Ile (GAU) gene left exon" intron 3343..4241 /note="intron" tRNA 4242..4326 /note="tRNA-Ile (GAU) gene right exon" tRNA 4391..4428 /note="tRNA-Ala (UGC) left exon" intron 4429..5234 /note="intron" tRNA 5235..5269 /note="tRNA-Ala (UGC) right exon" rRNA 5413..8300 /note="23S ribosomal RNA" rRNA 8394..8488 /note="4.5S ribosomal RNA" rRNA 8719..8839 /note="5S ribosomal RNA" BASE COUNT 2297 a 1992 c 2525 g 2048 t ORIGIN 1 ggatccaaaa ttgacgggtt aatgtgagct tatccatgcg gttaggcact cttcaaatag 61 gaatccattt tctaactggc tttcgtgctt tggtgagtcg tccgagatcc tttcgatgac 121 ctatgttgtg ttgaagggat atctatatga tccgatcgat tgcataagac ccgcggtagc 181 atagaacggg gaaagtatac agaaaagaca gttcttttcg atttcgatta tctatatatt 241 agttcgtttc tatttctaga tatctatttc tatatatcta tatattagta ttaatatcta 301 tatattagta ttagttatct atatattagt attagttagt agtactattc tattagttag 361 cgatccccgg ctctgtgagt tctttcttcc gtgatgaact gtcggcacca gtcctacatt 421 ttttctctgt ggaccgagga gaaagggggc tcagcaggaa gaggattgta ccatgagaga 481 agcacagagg tcaacccgct tcaaatatgg aacatggatt ctggcaatgc aacggagttg 541 ggtcctcata tcgatccgaa tgaatcagtc tttctacaga ggtcaatctt tgcctattag 601 gcaagaggat agcaagttcg aaattctgtc tcggtaggac atggatttct attactatga 661 aattcataaa ttagttaatg ggggggctac cattatcctt tttcttgtat gtgttcctaa 721 gagaaggaat ttgtccattt catgtttcga ggtctcaaaa aaagggcgtg gaaacagata 781 gaaactctgg aatggaaatg gaaaggaaat gtagccccag ttccttcgga aatggtaaga 841 tctttggcgc aagaagaagg ggcgatccat atcatcttga cttggttctg cttcccctct 901 ttttttaaga ataccgagtc gggttcttct cctaccagta tcgaatagaa catgctgaac 961 aagatcttct tcatggaaac ccactcgatt tagatcggga aaatcgtaca gattttatga 1021 aaccatgtgc tatggctcga atccatagtc aatcctattt tcgataggac cggttgacaa 1081 ttgaatccaa tttttcccat tatttgactg tccataatag tgcggaaaga aagcccggag 1141 gaagagtggc cttgcgtttc tcgccccttt gccttaggat tcgttaattc tctttctcga 1201 tgggacgggg aagggatata actcagcggt agagtgtcac cttgacgtgg tggaagtcat 1261 cagttcgagc ctgattatcc ctaaacctaa tgtgagtttt ttctattttg acttactccc 1321 ccaccacgat cgaacgggaa tggataggag gcttgtggga ttgacgtgat agggtagggt 1381 tggctatact gctggtggcg aactccaggc taataatctg aagcgcatgg atacaagtta 1441 tccttggaag gaaagacaat tccgaatccg ctttgtctac gaataaggaa gctataagta 1501 atgcaactat gaatctcatg gagagttcga tcctggctca ggatgaacgc tggcggcatg 1561 cttaacacat gcaagtcgaa cgggaagtgg tgtttccagt ggcgaacggg tgagtaacgc 1621 gtaagaacct gcccttggga ggggaacaac aactggaaac ggttgctaat accccgtagg 1681 ctgaggagca aaaggagaaa tccgcccaag gaggggctcg cgtctgatta gctagttggt 1741 gaggcaatag cttaccaagg cgatgatcag tagctggtcc gagaggatga tcagccacac 1801 tgggactgag acacggccca gactcctacg ggaggcagca gtggggaatt ttccgcaatg 1861 ggcgaaagcc tgacggagca atgccgcgtg gaggtggaag gcctacgggt cgtcaacttc 1921 ttttctcgga gaagaaacaa tgacggtatc tgaggaataa gcatcggcta actctgtgcc 1981 agcagccgcg gtaagacaga ggatgcaagc gttatccgga atgattgggc gtaaagcgtc 2041 tgtaggtggc ttttcaagtc cgccgtcaaa tcccagggct caaccctgga caggcggtgg 2101 aaactaccaa gctggagtac ggtaggggca gagggaattt ccggtggagc ggtgaaatgc 2161 attgagatcg gaaagaacac caacggcgaa agcactctgc tgggccgaca ctgacactga 2221 gagacgaaag ctaggggagc aaatgggatt agagacccca gtagtcctag ccgtaaacga 2281 tggatactag gtgctgtgcg actcgacccg tgcagtgctg tagctaacgc gttaagtatc 2341 ccgcctgggg agtacgttcg caagaatgaa actcaaagga attgacgggg gcccgcacaa 2401 gcggtggagc atgtggttta attcgatgca aggcgaagaa ccttaccagg gcttgacatg 2461 ccgcgaatcc tcttgaaaga gaggggtgcc ctcgggaacg cggacacagg tggtgcatgg 2521 ctgtcgtcag ctcgtgccgt aaggtgttgg gttaagtctc gcaacgagcg caaccctcgt 2581 gtttagttgc cactatgagt ttggaaccct gaacagaccg ccggtgttaa gccggaggaa 2641 ggagaggatg aggccaagtc atcatgcccc ttatgccctg ggcgacacac gtgctacaat 2701 gggcgggaca aagggtcgcg atctcgcgag ggtgagctaa ctccaaaaac ccgtcctcag 2761 ttcggattgc aggctgcaac tcgcctgcat gaagcaggaa tcgctagtaa tcgccggtca 2821 gccatacggc ggcgaatccg ttcccgggcc ttgtacacac cgcccgtcac actataggag 2881 ctggccaggt ttgaagtcat tacccttaac cgtaaggagg gggatgccta aggctaggct 2941 tgcgactgga gtgaagtcgt aacaaggtag ccgtactgga aggtgcggct ggatcacctc 3001 cttttcaggg agagctaatg cttatgctta ttgggtattt tggtttgaca ctgcttcacg 3061 cccaaaaaga aggcagctac gtctgagcta aacttggata tggaagtctt ctttcgttta 3121 gggtgaagta agaccaagct catgagctta ttatcctagg tcggaacaaa ttagttgata 3181 gtgataggat cccctttttg acgtccccat gtccccccgt gtggcggcat ggggatgtca 3241 aaaggaaagg gatggagttt ttctcgcttt tggcgtagcg gcctcccttt gggaggccgc 3301 gcgacgggct attagctcag tggtagagcg cgcccctgat aattcgtcgt tgtgcctcgg 3361 ctgtgagggc tctcagccac atggatagtt caatgtgctc atcagcgcct gacccgaaga 3421 tgtggatcat ccaaggcaca ttagcatggc gtactcctcc tgtttgaatc ggagtttgaa 3481 accaaacaaa cttctcctca ggaggataga tggggcgatt caggtgagat cccatgtaga 3541 tcgaactttc tattcactcg tgggatccgg gcggtccggg ggggggccac cgcggctcct 3601 ctcttctcga gaatccatac atcccttatc agtgtatgga gagctatctc tcgagcacag 3661 gttgaggttc gtcctcaatg ggaaaatgga gcacctaaca acgcatcttc acagaccaag 3721 aactacgaga tcaccccttt cattctgggg tgacggaggg atcgtaccat tcgagccttt 3781 ttttcatgct tttccggcgg tctggagaaa gcagtaatca ataggacttc cctaatcctc 3841 ccttcctgaa aggaagaacg tgaaattctt tttcctttct gcagggacca ggagattgga 3901 tctagccata agaggaatgc ttggtataaa taagccactt cttggtcttc gaccccctaa 3961 gtcactacga gcgcccccga tcagtgcaat gggatgtggc tatttatcta tctcttgact 4021 cgaaatggga gcagagcagg tttgaaaaag gatcttagag tgtctagggt tgggccagga 4081 gggtctctta accccttctt ttttctgccc atcggagtta tttcccaagg acttgccgtg 4141 gtaaggggga gaagggggaa gaagcacact tgaagagcgc agtacaacgg ggagttgtat 4201 gctgcgttcg ggaaggatgg atcgctcccg aaaaggagtc tattgattct ctcccaattg 4261 gttggatcgt aggggcgatg atttacttca cgggcgaggt ctctggttca agtccaggat 4321 ggcccagctg cgcagggaaa agaatagaag aagcatctga ctctttcatg catactccac 4381 ttggctcggg ggggatatag ctcagttggt agagctccgc tcttgcaatt gggtcgttgc 4441 gattacgggt tggctgtcta attgtccagg cggtaatgat agtatcttgt acctgaaccg 4501 gtggctcact ttttctaagt aatggggaag aggactgaaa catgccactg aaagactcta 4561 ctgagacaaa aagatgggct gtcaaaaagg tagaggaggt aggatgggca gttggtcaga 4621 tctagtatgg atcgtacatg gacgatagtt ggagtcggcg gctctcctag gcttccctca 4681 tctgggatcc ctggggaaga ggatcaagtt ggcccttgcg aatagcttga tgcactatct 4741 cccttcaacc ctttgagcga aatgtggcaa aaggaaggaa aatccatgga ccgaccccat 4801 tgtctccacc ccgtaggaac tacgagatca ccccaaggac gccttcggtg ggtctatcgg 4861 accgaccata gatcctgttc aataagtgga acacaatagc cgtccgctct ccggttgggc 4921 agtaagggtc ggagaagggc aatcactcgt tcataaaacc agcattcata agttaagatc 4981 aaagagtcgg gcggaaaaag gggagagctc cccgttcctg gttctcctgt agctggattc 5041 cccggaacca caagaatcct tagaatggga ttccaactca gcaccttttg ttttgggatt 5101 ttgagaagag ttgctctttg gagagcacag tacgatgaaa gttgtaagct gtgttcgggg 5161 gggagttatt gcctatcgtt gtcctctatg gtagaacccg tcggggaggc ctgagaggcg 5221 gtggtttacc ctgtggcgga tgtcagcggt tcgagtccgc ttatctccag cccgtgaact 5281 tagcggatac tatgatagca ccgaaggttg ccaattcgtc agttcgatct atgatttcgc 5341 attcatggac gttgataaga tccttccatt tagtagcacc ttaggatggc atagccttaa 5401 cgttaatggc gaggttcaaa agaggaaagg cttgcggtgg atacctaggc acccagagac 5461 gaggaagagg cgtagcaagc gacgaaatgc ttcggggagt tgaaaataag catagatccg 5521 gagattccca aataggtcaa ccttttgaac tgcctgccga atccatgagc aggcaagaga 5581 caacctggcg aactgaaaca tcttagtagc cagaggaaaa gaaagcaaaa gcgattcccg 5641 tagtagcggc gagcgaaatg ggagcagcct aaaccgtgaa aacggggttg tgggtgagca 5701 atacaagcgt tgtgctgcta ggcgaagcgg ttgagtgccg caccctagat ggctatagtc 5761 cagtagccga tagcatcact gcttacgctc tgacccgagt agcatggggc acgtggaatc 5821 ccgtgtgaat cagcaaggac caccttgcaa ggctaaatac tcctgggtga ccgatagcga 5881 agtagtaccg tgagggaaag gtgaaaagaa cccccagtgg gtagtgaaat agaacgtgaa 5941 accgtgctga gctcccaagc agtgggaggg gaaagtgatc tctgaccgcg tgcctgttga 6001 agaatgagcc ggcgactcat aggcagtggc ttggttaagg gaatggaacc caccggagcc 6061 gtagcgaaag cgagtcttca tagggcgatt gtcactgctt atggacccga acctgggtga 6121 tctatccatg accaggatga agcttggatg aaactaagca gaggtccgaa ccgactgatg 6181 ttgaagaatc agcggatgag ttgtggttag gggtgaaatg ccactcgaac ccagagctag 6241 ctggttctcc ccgaaatgcg ttgaggcgca gcagttgact ggacatctag gggtaaagca 6301 ctgtttcggt gcggctgcgc gagcggtacc aaatcgaggc aaactctgaa tactagatat 6361 gacccaaaaa taacaggggt caaggtcggc cagtgagacg atgggggata agcttcatcg 6421 tcgagaggga aacagcccgg atcaccagct aaggcccctt aatgaccgct cagtgataaa 6481 ggaggtgggg gtgcaaagac agccatgagg tttgcctaga agcagccacc ctttaaagag 6541 tgcgtaatag ctcactgact ggcgcccttg cgctgaagat gaacggggct aagcgatctg 6601 ccgaagctgt gggatgtcaa aatgcatcgg taggggagcg ttccgcctta gagggaagca 6661 aacgcgaaag cgggggtcga cgaagcggaa gcgagaatgt cggcttgagt aacgaaaaca 6721 ttggtgagaa tccaatgccc cgaaaaccca aggtttcctc cgcaaggttc gtccacggag 6781 ggtgagtcag ggcctaagat caggccgaaa ggctaagtcg atggacaaca ggtcaatatt 6841 cctgtactac cccttgttgg tacggaggga cggaggaggc taggttagcc gaaagatggt 6901 tataggttta aggacacaag gtgaccctgc tttttcaggg taagaagggg tagagaaaat 6961 gcctcgagcc gaggtccgag taccaagcgc tgcagcgcga aagtatgagc cccgtggact 7021 agccattgct tctccacgag gctcatacca ggcgctacgg cgcgaagtat gtaacccatg 7081 ccatactccc aggaaaagct cgaacgacct tcaacaaaag ggtacctgta cccgaaaccg 7141 acacaggtgg gtaggtagag aatacctagg ggcgcgagac aactctctct aaggaactcg 7201 gcaaaatagc cccgtaactt cgggagaagg ggtgccccct cgcaaaaggg ggtcgcagtg 7261 accaggcccg ggcgactgta taccaaaaac acaggtctcc gcaaagtcgt aagaccatgt 7321 atgggggctg acgcctgccc agtgccggaa ggtcaaggaa gttggtgaac tgatgacagg 7381 gaagccggcg accgaagccc cggtgaacgg cggccgtaac tataacggtc ctaaggtagc 7441 gaaattcctt gtcgggtaag ttccgacccg cacgaaaggc gtaacgatct gggcactgtc 7501 tcggagagag gctcggtgaa atagacatgt ctgtgaagat gcggactacc tgcacctgga 7561 cagaaagacc ctatgaagct ttactgttcc ctgggattgg ctttgggctt ttcctgcgca 7621 gcttaggtgg aaggcgaaga aggccccctt ccgggggggc cgagccatca gtgagatacc 7681 actctggaag agctcaggat tctaaccttg tgtcagaccc gcgggccaag ggacagtctc 7741 aggtagacag tttctatggg gcgtaggcct cccaaaaggt aacggaggcg tgcaaaggtt 7801 tcctcgggcc agacggacat tggtcctcga gtgcaaaggc agaagggagc ttgactgcaa 7861 gactcacccg tcgagcagag acgaaagtcg gccttagtga tccgacggtg ccgagtggaa 7921 gggccgtcgc tcaacggata aaagttactc tagggataac aggctgatct tccccaagag 7981 tccacatcga cgggaaggtt tggcacctcg atgtcggctc ttcgccacct ggagctgtag 8041 gtggttccaa gggttgggct gttcgcccat taatgcggta cgtgagctgg gttcagaacg 8101 tcgtgagacg ttcggtccat atccggtgtg ggcgttagag cattgagagg acctttcact 8161 agtacgagag gaccgggaag gacgcacctc tggtgtacca gttatcgtgc ctacggtaaa 8221 cgctgggtag ccaagtgtgg agaggataac tgccgaaagc atataagtag taagcccacc 8281 ccaagatgag tgctctctcc tccgacttcc ctagagcctc cggtagcaca gccgagacag 8341 cgacgggttc tccacccaca cggggatgga gcgacagaag tatggaaata ggataaggta 8401 gcggcgagac gagccgttta aataggtgtc aagtggaagt gcagtgatgt atgcagctga 8461 ggcatcctaa cgaacgaacg atttgaacct tgttcctaca cgacctgatc aaatcgatca 8521 ggcacttgcc atctatcttc attgttcaac tcttgatgaa aagaaaagat gaaaaaacca 8581 aaaaaagctc tgcccttcca tctcttggat aaatagagag ggagggcaga gtcctttggt 8641 gtcccttcca gttaagaatt gggacttcac aattactagc caatatttct ctcatgcctt 8701 ttctcgttca tggttcgata ttctggtgtc ctaggcgtag aggaaccaca ccaatccatc 8761 ccgaatttgg tggttaaact ctactgcggt gacgatactg taggggaggt cctgcggcaa 8821 aatagctcga tgccagaatg ataaaaagct taacacctct ta //