GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS EGREGS16R 3231 bp ds-DNA ORG 22-MAY-1991
DEFINITION Euglena gracilis chloroplast DNA between s16S and 16S rRNA genes
ACCESSION X05005
KEYWORDS 16S ribosomal RNA; 330 element; 5S ribosomal RNA; inverted repeat;
pseudogene; ribosomal DNA; ribosomal RNA; rrn operon;
s16S RNA gene; unidentified reading frame.
SOURCE Chloroplast Euglena gracilis DNA.
ORGANISM Chloroplast Euglena gracilis
Eukaryota; Plantae; Thallobionta; Euglenophycota; Euglenophyceae;
Euglenales.
REFERENCE 1 (bases 1 to 3231)
AUTHORS Roux,E. and Stutz,E.
TITLE The chloroplast genome of Euglena gracilis: the mosaic structure of
a DNA segment linking the extra 16S rRNA gene with the rrn operon A
JOURNAL Curr. Genet. 9, 221-227 (1985)
STANDARD full automatic
COMMENT SWISS-PROT; P05729; YC46$EUGGR.
*source: strain=Z; clone=BG14; For overlapping sequence see V00159
Data kindly reviewed (08-OCT-1987) by STUTZ E.
From EMBL 26 entry CHEGS16R; dated 18-MAR-1991.
FEATURES Location/Qualifiers
rRNA <1..12
/note="s16 SrRNA"
repeat_region 29..322
/note="330 a element"
CDS 400..1617
/note="ORF (AA 1-406)"
/codon_start=400
repeat_unit 403..545
/note="inverted repeat A (IR Ia)"
repeat_unit 1682..1812
/note="inverted repeat A' (IR Ib)"
rRNA 2035..2149
/note="s5 Sr RNA"
repeat_region 2186..2492
/note="330 b element"
misc_feature 2203..2208
/note="pot. transcription terminator"
promoter 2912..2918
/note="pot. promoter"
promoter 2936..2941
/note="pot. promoter"
misc_feature 3003..3067
/note="pseudo tRNA-Ala"
misc_feature 3102..3149
/note="pseudo tRNA-Try"
BASE COUNT 1012 a 451 c 569 g 1199 t
ORIGIN
1 ggaacaattc cctttagttt tttactgaat ttatttatta atattaactc gattttcgac
61 taatttttat gactaccgct atgttagtat ttattggatg gataaatatg ttgcaattaa
121 tttaaaccaa caaattgtca aaaacttctc ctttgagttt gaatttttct ggccaaagca
181 ggatgcatgg gaagaaatta aaaaattttt atatagaaat ccgtggattt ccgaggatat
241 cgcttttaaa ctttaaatga tatacgatat tgtcgagtgt tggcaaaatg attatgttct
301 gccagaatac aactgattaa tctgtcgagg gaatcttttg gttctctttt aaaagtccga
361 agagtacaaa atcaaggtaa gcacttgact ttttctccta tgtttttgaa tggttttttg
421 cgccgtctta cgcgaaaaat aaaacaacat ggctatgcgt tttttgtcgt ttctgttgat
481 ggcatagcta ctggcgtaaa aggctccgta aaaggatctt tttctgttgc ttcacttgac
541 ccgatggtca tggaaaatat agaaaaatgt gcaatactgc acaatgagga tcctcatatt
601 gcttatcctc atgaacagcc ttttgctttg cctaggaagg gcaaagcaaa atctgtgaag
661 ggatttgcaa aatctatgaa gggaaaagca aaagagaata gtaagccgaa agacatttta
721 tttcctacat ttcttgatta ttcttcccaa acggcgtata tagcttctat cctattaaat
781 aaatatagga ttgaaacttt tcttttacaa aacatggcac atctttatcg ggagttaatc
841 ccatgctttg actacgattc gtgggaatgt gtggccgatg ctttacggga aaaagctaat
901 gaaatatttg aagcgaatat ttcgcgcaat ttgatgctat taatattgac cgggttatat
961 gataacctgg tcccccatca tcaacaagaa gtatttaaca aagcttccaa taaatttttg
1021 aaagaattag aagaaaaaat ggacactagt gatcctaggg tagttatatt tttgatttgt
1081 ttaactatgg tcctttgtgc tggtggagga ttttttagct gtaaacgtca ttctaataaa
1141 aaaagatcaa aagcttctta tactcctcct gttcctgaca attatgctat atttaatgat
1201 ttgggtaaat ataaagctaa ggttcctgta tttgaatggc aaaatgctca tgcgcatagt
1261 ttaggtatta tgcctctacc gcctaatctt gtgaatgaaa tgagttcaga agaaatcaag
1321 gaagctattt tagaggttcc gaaagaagcc gcaaaaggct tagtttatgg gatacctcac
1381 tttcttatag gtagtgtggt taactctttt acgggagtta agtatatttt gatgcgagta
1441 ggaactgtag tgttttttac aattgctggt cctttcattt tattagatta cgttaaggat
1501 cgtgtgagag agtattattg gtttgttaca cgtaatttct cgaattttcg agagttcctt
1561 tttcatgcga taacaagttt gttatcactt tttcccggag gaaaaatgtt tcaggaatga
1621 tagaaaattt ttaatttaca tttattgtat atatattaaa taaaaaaata atataaacta
1681 tattgggtca agtgaagcaa cagtaaaaga tccttttacg ccggtagcta tgtcatcaac
1741 aaaaacgaca aaaaacgcat agccatattc ttttattttt cgcgcaagac ggcgaaaaaa
1801 acgatttaaa aatgaagaga gagcaatgct ttctttaaaa gaatgaatta atagtttaac
1861 aaggattgtc attatttttc cgatttgtcc tgaaaatttt tttcatgaat tttatttttt
1921 tatgaatttg taatattttt acttttcttt aaatatttta tttttttgca tttattttta
1981 cttgtcactt ttttaagatt taaaataaaa gtttattgaa tgaactttta ttttagggtc
2041 ctcttgcctt tatggaacta ctcaaaatag tttgaacttg caagttaaac ataaagggta
2101 aatagatact tgaaaggtta ctttccggga aaagatttta gtgcccttat gggaagttta
2161 atttatttaa ttgtctctta gtgagtttat ttattaatat taactcgatt ttcgagtaat
2221 ttttatgact gccgttacgt tagtgtttta ttgcatggat aaatgtattg tggtgtggta
2281 taattaaacc aaggaatttg tcaaaccacg tttcctttaa gtttgaattt ttttttggcc
2341 aaaacatgat gcttcggaaa aaataagaca atctgtttat agaaatcagt gaatttcgta
2401 atattttctt tttaaaattt taaacgatat gaataatatc ctcgagtgtt tggaaaatga
2461 ctatgtttct tcgctaatat aaaagattaa tcacaaaatt caacaagata ggttgaatca
2521 tagtgagaat attatgtagt tttctgataa tagttttatt ttgttgtaca ttatagttat
2581 tgctactttg tatttgggtt atgtgtgtgc tttttagttg taaatctttt gctagtaaga
2641 agcgtgtcgc tcattgtcga tttggacgaa tatttataaa atgctacaag agaccaaaat
2701 gtccttatac ttcttatatt gctgctgagt accctatatt ttgtgatatt gaaaaatatt
2761 aaggtaaggt tcctagactt tcatacgtaa atgctcatgc gcacagttta ggtgttatgc
2821 ttttacccct gatcttgtga attcttttca ttcacaagaa ataacttagc ttaattccta
2881 gtgtaaattt ttccgtactt taacgtgtgg ctgggacaat ttttttattt ttaattaaaa
2941 taccgtataa attttaaaaa ataaaaaaat caaaaggaaa attttttatt tttcaaagat
3001 cactattatc ttttattatt atagaatacc tttgataagg gtagggtcgt ggattgaatc
3061 cttgtattag ccaaatattt cttttcttta aaatcctaag gcgtaggtct ccaaaacctg
3121 atgtagtagg ttcgaatcct acaaagcgcg cttttagtgt acacattata gtaaatgtgc
3181 cccttgcttg gtcaccaaga gggtgagagg atttgaccaa ctttgatgtt t
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