GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS RICALAM 4276 bp ds-DNA PLN 22-MAY-1991 DEFINITION Rice alpha-amylase gene ACCESSION X16509 KEYWORDS amylase-alpha. SOURCE Oryza sativa DNA. ORGANISM Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 4276) AUTHORS Rodriguez,R.L. JOURNAL Unpublished (1989) STANDARD full automatic REFERENCE 2 (bases 1 to 4276) AUTHORS Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L. TITLE Classification and characterisation of the rice alpha-amylase multigene family JOURNAL Plant Mol. Biol. 14, 655-668 (1990) STANDARD full automatic COMMENT SWISS-PROT; P17654; AMY$ORYSA. *source: strain=Japonica M202; clone=lambda OSg2; library=EMBL4; Data kindly reviewed (02-JUL-1990) by Rodriguez R.L. From EMBL 26 entry OSALAM; dated 19-MAR-1991. FEATURES Location/Qualifiers mRNA <2474..2473 /note="exon 1" promoter 2299..2306 /note="put. TATA box" precursor_RNA 2333..4169 /note="put. primary transcript" CDS 2384..2473 /note="alpha-amylase (AA 1-30)" /codon_start=2384 intron 2474..2581 /note="intron I" mRNA 2582..2714 /note="exon 2" CDS 2582..2714 /note="alpha-amylase (AA 31-74) (2714 is 1st base in codon)" /codon_start=2582 intron 2715..2807 /note="intron II" mRNA 2808..3619 /note="exon 3" CDS 2808..3619 /note="alpha-amylase (AA 75-345) (3620 is 2nd base in codon)" /codon_start=2808 intron 3620..3703 /note="intron III" mRNA 3704..>3703 /note="exon 4" CDS 3704..3952 /note="alpha-amylase (AA 346-428)" /codon_start=3704 misc_feature 4137..4142 /note="put. polyA signal" misc_feature 4150..4155 /note="put. alt. polyA signal" BASE COUNT 1109 a 1076 c 935 g 1156 t ORIGIN 1 gcatgcgaga ggcacggggt tcgattcccc gcgtctccat cggcactgtt ttttaacatc 61 aaacgctgtt cgatccacta tctgttaatt tcgcaaacac aactaaatct tttttttttt 121 ttgccggtgc gtgcagtgtg acgtccaagg catggcgcat tggcgcctcc cctctttccc 181 ttgatctttt catcagttcg ttcttcttgc agaaaagctg ttctgttaag tcggttccga 241 tctgctcttg ggctcttgcc agaaacaacc tgtgtacgcc agacttatca agccaaccat 301 cctgatgagc ctctgcttat acaagccttt gactccaaaa aggacgagga ggcttgcagc 361 cgcacggaaa taagccgacc gatcctttat tgctctatct ttttcccttg gaataaaaaa 421 cagcccaatt aaaatctggg atgaaactat ggctagctgt tcgcggtgtc agttctcggg 481 acgctaccgt tgttttgttt gaaccggaat gttcagggcg gttcacacca tagacttgga 541 gccaagtggt tccatccaca aaattttctc atcttgaata ttctgttatc tgcctcgaca 601 gacgcaccat atcctgtgtt caggaatgaa tgtgctacag ccaacgtgct gcatgaaatt 661 tgctgaaatc gtgctaaaat gtgcatggca acaggaacct gatgccctgg tcctgtggaa 721 ctgccacggg aaagtatttt ttatagctag gtgcaatcgt atctaggtgt atacatgtca 781 cctacatagc tactcccctt tatcttaaaa tataataatt tttaactctc agtatttgtc 841 ctaaaatata acaaattctc catcaacatt atcttcccaa ccaatcacaa cccttcatca 901 ttaatttttt ccccctacct ccactactca tctaatcaca accctccaac actcacttct 961 atctactttc ttaataactg tcttcaaccc taaaacttct tatattttag gacggaggga 1021 gtatctaaat atttcataaa aaaaatgtta agatagataa agaagatata aacccactat 1081 gcaaacatgc acatcaaaat ttaatttaca gtaaagaaac agaaataaca tattctattt 1141 gtgctggaga tgtactgttc acaatattgt ttttttattt tttatttatc tgattatata 1201 tctgtttcag ccttgcatgg ttgtgtatgt ttgtgtatag acttatgcca ttgtgattga 1261 tgctaccaat tattttcaga ctattttttt atagaggaat tttatagttc ttgagaaaat 1321 accttgaagt atctaaattt tacactaaaa ttgttggtac cttgaggtac aaagtaccta 1381 gaggtaccaa attttactag aaaattgtgg cacctttagg taccttctca aaaatagtac 1441 aattatgggc cgttttggat ttagtgccaa aacgtgctct acaaatattt tgatagtttg 1501 aacagtgcat aagacgggtt tggtttgaag ccaaatcatt ggcattgcca atgtccaatt 1561 tgatattttc tatattatgc taaaagcttg gttctaaatt ggcctccaac caaatacaac 1621 tctactctac caaaaaattt gtagtgccaa aacttgccta ggttttgtca ctaccaacat 1681 tttggtaagt attaaaccaa acaagcccta cattttttta tgtacattta agttgtatgt 1741 aaatgatggg tgcggttgca cctaggtgaa aaaaaataca tattcgccac aactcgcaac 1801 atgtaccaat tcagcagcaa gtgtaagaga gaagatttct ctcgttttac acgcgcacgt 1861 tcaattcctg aactactaaa cggtatgatt ttttgcaaaa attttctata ggaaagttac 1921 ttaaaaatta tattaatcta tttttaaaat ttaaaatagt taatactcaa ttaattatac 1981 gttaatggct cagctcgttt tgcgtacatt ctcaatcgat tcttttcctc tgctctcaaa 2041 tgctctgtgt gcgatcaggt attcatgttc agctcgcaca agcacaagca agacagatgg 2101 aattcctact gacctgcgcc ttttgagtcg ctccaactct caaagtctca aggccattaa 2161 attgcctatg ggctcaccag ccaataacaa actccggctg ttatccatcc aatccagtgt 2221 cccaaagcaa cattcaagcc cagccaggcc tccaaaagtt gcaagttgag catggcaaaa 2281 tccccggcaa ttctcgacta taaatacctg accagacaca cccaggagct tcatcaatca 2341 tccatctccg aagtgtgtct gcagcatgca ggtgctgaac accatggtga acaaacactt 2401 cttgtccctt tcggtcctca tcgtcctcct tggcctctcc tccaacttga cagccgggca 2461 agtcctgttt caggtaagag atcgccatga gttgggtttc aggcttcagt gaactgatcg 2521 ggttttgtac tgagcctaag agaatgatgc agtgatgctc ttgtgtttga tgatgatgca 2581 gggattcaac tgggagtcgt ggaaggagaa tggcgggtgg tacaacttcc tgatgggcaa 2641 ggtggacgac atcgccgcag ccggcatcac ccacgtctgg ctccctccgc cgtctcactc 2701 tgtcggcgag caaggtgcgg tgctctgctc tctcgatccc ctcgtcgtcg caccattgcc 2761 ggcaaaatac atgcacaggt cgttgaattg cttgaatgct tctgcaggct acatgcctgg 2821 gcggctgtac gatctggacg cgtctaagta cggcaacgag gcgcagctca agtcgctgat 2881 cgaggcgttc catggcaagg gcgtccaggt gatcgccgac atcgtcatca accaccgcac 2941 ggcggagcac aaggacggcc gcggcatcta ctgcctcttc gagggcggga cgcccgactc 3001 ccgcctcgac tggggcccgc acatgatctg ccgcgacgac ccctacggcg atggcaccgg 3061 caacccggac accggcgccg acttcgccgc cgcgccggac atcgaccacc tcaacaagcg 3121 cgtccagcgg gagctcattg gctggctcga ctggctcaag atggacatcg gcttcgacgc 3181 gtggcgcctc gacttcgcca agggctactc cgccgacatg gcaaagatct acatcgacgc 3241 caccgagccg agcttcgccg tggccgagat atggacgtcc atggcgaacg gcggggacgg 3301 caagccgaac tacgaccaga acgcgcaccg gcaggagctg gtcaactggg tcgatcgtgt 3361 cggcggcgcc aacagcaacg gcacggcgtt cgacttcacc accaagggca tcctcaacgt 3421 cgccgtggag ggcgagctgt ggcgcctccg cggcgaggac ggcaaggcgc ccggcatgat 3481 cgggtggtgg ccggccaagg cgacgacctt cgtcgacaac cacgacaccg gctcgacgca 3541 gcacctgtgg ccgttcccct ccgacaaggt catgcagggc tacgcataca tcctcaccca 3601 ccccggcaac ccatgcatcg tgagtagcca actcgatcag aaattctgaa tcatcctgca 3661 aactgatcga tgaactgatg ataaattctg taaaattgtt cagttctacg accatttctt 3721 cgattggggt ctcaaggagg agatcgagcg cctggtgtca atcagaaacc ggcaggggat 3781 ccacccggcg agcgagctgc gcatcatgga agctgacagc gatctctacc tcgcggagat 3841 cgatggcaag gtgatcacaa agattggacc aagatacgac gtcgaacacc tcatccccga 3901 aggcttccag gtcgtcgcgc acggtgatgg ctacgcaatc tgggagaaaa tctgagcgca 3961 cgatgacgag actctcagtt tagcagattt aacctgcgat ttttaccctg accggtatac 4021 gtatatacgt gccggcaacg agctgtatcc gatccgaatt acggatgcaa ttgtccacga 4081 agtacttcct ccgtaaataa agtaggatca gggacataca tttgtatggt tttacgaata 4141 atgctatgca ataaaatttg cactgcttaa tgcttatgca tttttgcttg gttcgattgt 4201 actggtgaat tattgttact gttcttttta cttctcgagt ggcagtattg ttcttctacg 4261 aaaatttgat gcgtag //