GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS RICCPATP 3004 bp ds-DNA ORG 06-MAR-1991 DEFINITION Rice (O.sativa) chloroplast beta (atpB) and epsilon (atpE) subunits of ATP synthase genes, complete cds. ACCESSION D00432 KEYWORDS ATP synthase. SOURCE Oryza sativa (japonica Nipponbare) leaf DNA. ORGANISM Chloroplast Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 3004) AUTHORS Nishizawa,Y. and Hirai,A. TITLE The nucleotide sequences and expression of genes for the beta and epsilon subunits of ATP synthase from rice (Oriza sativa L.) JOURNAL Jpn. J. Genet. 64, 223-229 (1989) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Atsushi Hirai Grad.Div. Biochemical Regulation Nagoya University Furo-cho, Chikusaku Nagoya, Aichi 464-01 JAPAN Phone: 052-781-5111 x6863 Fax: 052-781-4447 Telex: 442 2120 FEATURES Location/Qualifiers misc_signal 206..211 /note="-35 consensus sequence (putative)" misc_signal 230..234 /note="-10 consensus sequence (putative)" misc_feature 239..239 /note="transcription start site" misc_feature 542..546 /note="ribosome-binding site (putative)" CDS 551..2047 /note="ATP synthase beta subunit (atpB)" misc_feature 2023..2027 /note="ribosome-binding site (putative)" CDS 2044..2457 /note="ATP synthase epsilon subunit (atpE)" repeat_region 2509..2528 /note="one pair of a stem and loop structure" repeat_region 2540..2559 /note="the other pair of a stem and loop structure" BASE COUNT 921 a 544 c 646 g 893 t ORIGIN 1 ttcataagac ttgagttgtt gttattgtaa gtcaacatgc ttcgattatt aaaccatgga 61 tttgattcac caaatccatc tttattgtat actctttaat agatatagcg caaccccaaa 121 tcaacttcta atccttatta agttcttaat agtaccccct tttcttattt tgagtggaaa 181 tacctaaata tacgaaaatt ctctgttgac agcaatctat gcttcacagt agtatatatt 241 ttgtatatcg aagtcctaga taagaaagta gagtaggcac aaatcgttta caaaaggcaa 301 aatgtatatg aaaaaaagat tgattgaact ttccgacggg ctcattccat gagtaaacga 361 ttgaatggga ttcgtttggg caacgaaatc aagtgctggt ccccttttct ctcttattga 421 attaactaat tcatttcctt ttgacttttg gatttttgga tatttttttt ggtgttgatt 481 tggcattatt caacaagaaa aaaatcaaaa tttcgataaa ttcctttttt ttgaaaatta 541 tgtgataatt atgagaacca atcctactac ttctcgtccc ggggtttcta caattgaaga 601 aaaaagtaca gggcgtatcg atcaaattat tggacccgtg ctggatgtca cttttccccg 661 gggcaagtta ccttatattt ataatgcttt ggtagtcaag agtcgagaca ctgacggtaa 721 gcaaattaat gtaacttgtg aggtacaaca attattagga aataatcgag ttagagctgt 781 agctatgagt gctacagatg ggttgatgag aggaatggaa gtgattgaca cgggagctcc 841 tctcagtgtt cctgtcggtg gagctactct tggacgaatt ttcaacgttc ttggggagcc 901 tgttgacaat ttgggtcctg tagatactag tgcaacattc cctattcata gatccgcgcc 961 cgcctttatc gagttagata cgaaattatc catctttgaa actggtatta aggtggtcga 1021 tcttttagct ccttatcggc gtggaggaaa aatcggacta tttgggggag ctggagtagg 1081 taaaacagta ctcatcatgg aattaatcaa caatattgct aaagctcacg ggggcgtatc 1141 cgtatttggc ggagtagggg aacggactcg tgaaggaaat gatctttata tggaaatgaa 1201 ggaatctgga gtaattaatg aaaaaaatct tgaggaatca aaggtagctc tagtctatgg 1261 ccaaatgaat gaaccgccag gagctcgtat gagagttggt ttgactgccc taactatggc 1321 agaatatttc cgagatgtta ataagcaaga cgtgcttcta ttcatcgata atatctttcg 1381 ttttgttcaa gcaggatcgg aggtatctgc cttattaggg agaatgccct ctgcagtggg 1441 ttatcaacct actcttagta cagaaatggg ttctttgcaa gaaagaatta cttctactaa 1501 aaagggatct ataacttcga tccaagcggt ttatgtacct gcggacgatt tgaccgaccc 1561 tgctcctgct acaacatttg cacatttgga tgctactacc gtactttcca gaggattagc 1621 ttccaaaggg atttatcctg cagtagatcc tttagattca acctcaacta tgttacaacc 1681 tcggatcgtt ggcaacgaac attatgaaac tgcgcaaaga gttaagcaaa ctttacaacg 1741 ttacaaagaa cttcaggaca ttatcgcaat tcttgggttg gatgaattat cggaggagga 1801 tcgtttaact gtagcaagag cacgaaaaat tgagcgcttc ttatcacaac cgttttttgt 1861 ggcagaagtt tttaccggtt ctccgggaaa gtatgttggt cttgcagaaa ctattagggg 1921 atttcaacta atcctttccg gagaattaga cggcctaccc gaacaggctt tttatttggt 1981 ggggaacatc gatgaagcta gcacgaaagc tataaactta gaagaggaga acaaattgaa 2041 gaaatgaaat taaatcttta cgtactgact cctaagcgaa ttatttgggc ttgtgaagtg 2101 aaagaaatca ttttatctac taatagtggc caaattggcg tattaccaaa ccacgccccc 2161 attaacacag ctgtagatat gggtcccttg agaatacgcc tcctcaacga tcaatggtta 2221 acggcggttc tgtggagcgg ttttgccaga atagttaata atgagatcat cattttagga 2281 aatgatgcgg aactgggtag tgacattgat ccggaagaag ctcaacaggc acttgaaata 2341 gccgaagcta acgtgagtag agctgagggt acgaaagaat tggttgaagc gaaggtagct 2401 ctcagacgag ctaggatacg agtcgaggct gttaattgga ttcccccatc taattgaaga 2461 caacccaacg gtttagttga tacaaagaaa aagggaagag gggtagaaaa aattattaga 2521 tagcgaagcg aagtagggcc aatgctatct agtaattttt ctacctacct acctactatt 2581 ggatttgaac caatgactcc cgccgtatga aagcaatact ctaaccactg agttaagtag 2641 gcaatttatc accacaaagg aagacccttt acttcgatcg attatagatc gaatcctttt 2701 tataagcaaa taccgcttcg ttattggtat gttattatag taaacagatc aaaggatatc 2761 ctctactatt agagaatatt catcttgaca agaaattctc tatatattaa gatatctctg 2821 acaagggcta tagctcagtt cggtagagca actcgtttac acgtgcgcca atgcttttca 2881 agggagctta ttatgcaatg aacatagtgg atcttcttgc aaaatcaacg tcttacttca 2941 tggattcgag agaataggag aacagtcgcc tgacaaatag ttggttcagt ccgattcagg 3001 tacc //
GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS RICMTB2 1485 bp ds-DNA circular ORG 06-MAR-1991 DEFINITION Rice (O.sativa) mitochondrial plasmid-like DNA (B2). ACCESSION D00564 KEYWORDS plasmid-like DNA. SOURCE Rice (Chinsurah Boro II) callus mitochondrial plasmid-like DNA (B2) . ORGANISM Mitochondrion Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 1485) AUTHORS Tsutsumi,N., Yamaguchi,H., Kakiuchi,H. and Tano,S. JOURNAL Unpublished (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Nobuhiro Tsutsumi Lab. Radiation Genetics and Chemical Mutagenesis, Fac. Agr., The University of Tokyo 1-1-1 Yayoi, Bunkyo-ku Tokyo 113 Japan Phone: 03-812-2111 x5074 Email: c31798@tansei.cc.u-tokyo.ac.jp ntsutsum@niguts.nig.ac.jp FEATURES Location/Qualifiers BASE COUNT 406 a 317 c 319 g 443 t ORIGIN 1 ccgaggtacc agaggatagc ctttaggata tccgtcggta ggagatatcg agtcgttaga 61 gcacatatct ccgtgatccc ttccacagct aaacgtagat ctctatcttg tagtggagtg 121 tagagtaaag atataccgga gtggagtgca agaaggttat aggggagtgt ggcgcccgtt 181 gcccgccttt cgtctcggtt gaaaaacaaa actgttgctt gttttgttca ttcaagtagt 241 ggtttagccc tcgaatctat agcgaaagag ttagctcaac ctatctacta ctacccttgg 301 aaagggggtg tgtgtggtat acccgttacg actcccctcg aactgagcca ttttcatgat 361 tttacaatca aagaaagttc catacttttt tattcccggt atggagccaa cgtcgcttcg 421 ctttcgcagg acaatttcct tctggaaaaa tatccagtgg catatcccat ctagctctgg 481 gaatctttcc acaaccagcg ccttcttgtc cgatgaagtt caagtctcta acctgttctt 541 gcccgggaat gtccctcctt cgaactcgaa gtcagagttt tccggttatc cgatgggcga 601 tttatgatag ttccgatgca cttctcatgc tagcctatcg acaagatcag ggttcaacta 661 ctgttgcctc aacgggttcg ctggtcactt taacagtttt ttaagcaggc attttcgtgg 721 ttctcgtcat ataaaccagt caggtactag cgtgatttca tgcattaatc tattgctcga 781 aggaaccttt cgtcagaaaa cttattcaaa aggtacccgg tgttctagcg catttctgtt 841 aagagaagta ccccttgtag gcctgagatg ccctctatcg agcgatataa cgacggttgc 901 tatttttagg tacacgtgtt ttttgaagaa agcactttta aaaaggaaag tagtaaaatg 961 aaaatactca atttaataaa tcctaaatta tctgtggcat tgaattatga aagtaaacac 1021 tgaaagttta ccacttacaa aagtaaatgt actacccgac taaaaggagg aaatccaatt 1081 agaggtgtaa actcttttct tttctatcga gtagattccc ttttatttat aaatagtaaa 1141 ctaacgaata gataattagt attccctcat ataattagta ctagctgttc cttcattaat 1201 ggtacgtgta ttcacgaggg ctctgcttcg ctctattcca cctcccgggt gtatggaaaa 1261 atctttaaaa gaaataaatc atgcggtact tcttgtttta atcactcttc ctttcctccc 1321 ggaactgggg aagaaccctt ctgaaaagga atggaggtct atctttactc ggagtgcaac 1381 gcagagatag agatcgaaga gccgctgtgc ttggggacga ggggactcac tcaacctcaa 1441 agttgaggga atcccgaagc ctcggaatct agcgttagcg taagg //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS RICPCNAGEN 4556 bp ds-DNA PLN 22-MAY-1991 DEFINITION Rice (O. sativa) gene for proliferating cell nuclear antigen (PCNA) ACCESSION X54046 KEYWORDS proliferating cell nuclear antigen. SOURCE Oryza sativa DNA. ORGANISM Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 4556) AUTHORS Suzuka,I. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 4556) AUTHORS Suzuka,I., Hata,S., Matsuoka,M., Kosugi,S. and Hashimoto,J. TITLE Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxilairy protein) gene in plants JOURNAL Eur. J. Biochem. 195, 571-575 (1991) STANDARD full automatic COMMENT From EMBL 26 entry OSPCNAGEN; dated 26-MAR-1991. FEATURES Location/Qualifiers mRNA join(1510..1896,1982..2134,2231..2328,3046..>4556) /note="proliferating cell nuclear antigen" CDS join(1578..1896,1982..2134,2231..2328,3046..3267) /product="proliferating cell nuclear antigen" /codon_start=1578 exon 1510..1896 /number=1 exon 1510..1896 intron 1897..1981 /number=1 exon 1982..2134 /number=2 exon 1982..2134 exon 1982..2134 intron 2135..2230 /number=2 exon 2231..2328 /number=3 exon 2231..2328 exon 2231..2328 intron 2329..3045 /number=3 exon 3046..>4556 /number=4 exon 3046..>4556 BASE COUNT 1253 a 999 c 952 g 1352 t ORIGIN 1 aaaccggata tatgagatgt cctccgaatc aatgtactcc ctccgtccaa aaaaaaagac 61 aaaccttagt ttccgtgcca acgtttgacc gtccgtctta tttgaaaaaa ttatgaaaaa 121 aatataagtc acgcataaag tattaatcat gttttatcat ctaacaacaa tgaaaatact 181 aattatagtt ttttttataa gatggacagt taaatgttgg cacgaaaact catggtttat 241 cttttttttt gggacggagg gagtagacag tagactgaca aatcacaggc aactctgccc 301 tgcttgatgt tctgacgggc agattgtatc gtactactcc tccaggaaaa aaaatatttg 361 tttatgtcca gattcatatt aaaaaatact ttattttgag attgggggac tagtaggatg 421 atcaaagaaa agagagcgtg gtgcattgct aagaaacacc aaaatgctca atacttatac 481 acggcgtgga aacaagaaag cctcggtagg catgggttgt ggagtggatc gtgggccaga 541 ttgatcgtgg atcgctcgct ctcttcataa accaaaaagc tgggccggag aacgtcggcc 601 acctaatggg ccgagagcag tgacgcgttg agccagattc cggttcttac ggaagtggaa 661 gagctggctg cagcccaagc ccacctaccg ttctggccgg ttcgcggtga aacttaggcc 721 caaggaggcg gcacggtgcg gtcgactttt tccactcgtt ggatcgaatc gacggttggg 781 atcaaactgt acccactcca tttccgtgga aactaattat tttcatctaa aaatatacat 841 tttattttta tctgctccac tttctgtttt tttttcctgg tgaacgaacg caatttcatg 901 cgtaaagaac ggcaaagaaa aattaaattt gatgcaaaac gtataattat ttcacctgta 961 ccgtacttac tttcggccat tattcatgta gtagtaggat acttcgaaca caaattcata 1021 catacttcct ccgtttcaca atgtaagtca ttctagcatt tttcacattt atattgatga 1081 taaaatttta tctagattct aaatatgaga aatgctagaa tgacttacat tgtgaaatgg 1141 agagagtaaa aaagaaaaat aattcaaaat cattggaggg aaatggccaa gctgtgcggt 1201 cagcgagatg gcgcgaaagg caattccatc tcccgcccag ctcccagaac acccgccctt 1261 ttccaaatca ccaagaccaa gcacccgtca tccacttttc ccccactgcc aggtgggccc 1321 gtactccacc atggtcccac atgtcagctg aatcttccac tgcaagaagc gggaaacatt 1381 tcgggtggag gcgggtttcc ccccaatttc tccctccatt tttttttcgt ctcgcgtccc 1441 ccaaacccct ccctattaat ctcccccttc cccctttctt cccctcgccg ccgcctcctc 1501 ctcccaaacc ccacaagcga atcctagggt ttctcgcctc gccgccgcat cgccgccggg 1561 aagtctccgc cgccgccatg ttggagctga ggcttgtgca ggggagcctg ctgaagaagg 1621 tgctggaggc gatccgggag ctggtgacgg acgccaactt cgactgctcg gggacggggt 1681 tctcgctgca ggccatggat tccagccacg tcgccctcgt cgcgctgctc ctccgctccg 1741 aggggttcga gcactaccgc tgcgaccgca acctctccat ggggatgaac ctcaacaaca 1801 tggccaagat gctccgctgc gcgggcaacg acgacatcat caccatcaag gccgacgatg 1861 gctccgacac cgtcaccttc atgttcgagt cgcccagtga gtagtactag tctcaatcgt 1921 ctcgtgccct cacgtgttct tgatttgtgt gaccttgatt aatttgtgct tggatgaata 1981 gaccaagata agattgcgga tttcgagatg aagctgatgg acatcgacag cgagcacctc 2041 ggcatccctg actccgagta ccaggccatc gtccgcatgc cgtcctctga gttttccagg 2101 atctgcaagg atctgagcag catcggagac actggtgtgt gtgattatcc tcccgtggtt 2161 tctgcagacg cttgttgtta atttgtttct gtggcttgtt cttaaatctt taaactgctt 2221 ggcattccag ttatcatctc ggtgaccaag gagggtgtta agttctcgac cgctggagat 2281 attggaactg ccaacattgt ctgcaggcag aacaagactg ttgacaaggt aattaatcta 2341 tcgatggtgc cttctcaaac tgttactaac ttggtctacg atacctgtca tgtttgtaaa 2401 cttggaatgc cgtttgagag tcaagaaaac tacagtagca gagatggttc ttttgtactc 2461 aaatattgcg ctgttaacaa gtaatcacga gtacagcagc tagacagcta atttccttag 2521 gaaacattac agctaatttt ttcatggaga acaatgtagt gtctgtacta aaagaattat 2581 ttggttcagt tacatgatag catttgagct acatctcggt caccctagtt tgcttgttaa 2641 tgtttctgtt atgtgtttgc aatgtgtatg gtcctgggtc aataattggg ttacctgtat 2701 ctttaagtaa ctggcttgca tcagtcctat agttgtgctc attcatctgg ttatccagag 2761 taaagtttgt atctaacaat ttagtagtaa aactagtaaa aggagttttt tttttttgct 2821 gcaagggatc tgaaatcctt tagtcaaatt aagacatttc taagcatgaa taaagtatga 2881 atcctattat ccccatcttg catgtcaata tgtcatctga tcattatgct aactgcaaaa 2941 ctttctgtta ttctttcata ctggagtacc ggtttaggat catgcagcaa tgagtacagt 3001 aagtgataat cagtgtctaa tggatgtttt tttgggtcat tgcagccaga agatgctaca 3061 atcatagaga tgcaggaacc ggtgtcacta acctttgccc tgaggtacat gaactccttc 3121 accaaggcaa gcccgctctc tgaacaagtt acaatcagcc tttcatctga gctgccagtg 3181 gtggttgagt ataagattgc agagatgggc tacattagat tttatctggc gccaaagatt 3241 gaagaagatg aggaaatgaa gtcgtgattg tcgcataagg atatgacaaa atacccccta 3301 gtcttcagac catcatcctt tgcttaacaa ttgtttgtaa gcaaaatgat gttatgctta 3361 tcatcgctta cgacggaatg cttttacctt tgtatctgtg acttctgtaa atccttggat 3421 ttacagtgat gaatgttagg tttagtagat ttgtgagttt atgactgcat tgctgtagca 3481 tgattgtgct gctgtttgtt tgttcaattc ggttgttaca tatttgttgg gagaggagct 3541 tcctttgggt tgacactaac ttcatcagtg tttggaccca gaattgctat catcctcaag 3601 ctgtgaaagc caaatttcca tctttgagaa ggcttccaaa tttccatcta ttttaggctc 3661 tctgttgtca cctgtgataa ccgataagaa acaaaacaag ctatgaaaaa tgattttttt 3721 taaaacagtg gagacaaact atgcagcctc aattagtggc cacaggcatc tcacatctcc 3781 caattccggc ctacattggc aatatagatt tgatttgatg gtattttcct atttcctaac 3841 atcggatatg ttcattgtta ctggcagctt atagatagat ctccctttac aaagcacttc 3901 acaccagagt acaatggcac aacaagatat aactactgtt ctagaggtaa aatgctagat 3961 taggtgctgc tcatgatcac cagtcaccga ttttgatctg ctctgcactc cacaagtcca 4021 attggaaatt agatcatggg tttactttga ttctgccctc gaccctaact ttggtgtcac 4081 tggtttgcaa cctgtccaag attggaagct gaatcgtcag cttataatct gaaacaatta 4141 acacctttgt cagaattctg gagaacagtg tcacaaactg atttactagt tttaataagt 4201 gaaatttgct ctttgcatag tctaataatt gcatgttcat agtctaattg caaattatgt 4261 agtctgctgt taatctacct acagctgaat ttagggtcct ttctctattt ctcagaataa 4321 gatagtcaga ccaagaaacc ttgctgctgc tatgggacat tcatttatta ctaaacatgt 4381 taatgaaaaa acaagataaa ataggcgcac gctaatcttt aggccatcca aatccagttt 4441 ccttaaaata tgcttatgat cacaggaaag tattatggtg tactataaag aaataatcct 4501 atctataagg aaaatggagc ctactttcat tatactataa ataagtggca aaagaa //