GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS RICCPATP 3004 bp ds-DNA ORG 06-MAR-1991
DEFINITION Rice (O.sativa) chloroplast beta (atpB) and epsilon (atpE) subunits
of ATP synthase genes, complete cds.
ACCESSION D00432
KEYWORDS ATP synthase.
SOURCE Oryza sativa (japonica Nipponbare) leaf DNA.
ORGANISM Chloroplast Oryza sativa
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (bases 1 to 3004)
AUTHORS Nishizawa,Y. and Hirai,A.
TITLE The nucleotide sequences and expression of genes for the beta and
epsilon subunits of ATP synthase from rice (Oriza sativa L.)
JOURNAL Jpn. J. Genet. 64, 223-229 (1989)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Atsushi Hirai
Grad.Div. Biochemical Regulation
Nagoya University
Furo-cho, Chikusaku
Nagoya, Aichi 464-01
JAPAN
Phone: 052-781-5111 x6863
Fax: 052-781-4447
Telex: 442 2120
FEATURES Location/Qualifiers
misc_signal 206..211
/note="-35 consensus sequence (putative)"
misc_signal 230..234
/note="-10 consensus sequence (putative)"
misc_feature 239..239
/note="transcription start site"
misc_feature 542..546
/note="ribosome-binding site (putative)"
CDS 551..2047
/note="ATP synthase beta subunit (atpB)"
misc_feature 2023..2027
/note="ribosome-binding site (putative)"
CDS 2044..2457
/note="ATP synthase epsilon subunit (atpE)"
repeat_region 2509..2528
/note="one pair of a stem and loop structure"
repeat_region 2540..2559
/note="the other pair of a stem and loop structure"
BASE COUNT 921 a 544 c 646 g 893 t
ORIGIN
1 ttcataagac ttgagttgtt gttattgtaa gtcaacatgc ttcgattatt aaaccatgga
61 tttgattcac caaatccatc tttattgtat actctttaat agatatagcg caaccccaaa
121 tcaacttcta atccttatta agttcttaat agtaccccct tttcttattt tgagtggaaa
181 tacctaaata tacgaaaatt ctctgttgac agcaatctat gcttcacagt agtatatatt
241 ttgtatatcg aagtcctaga taagaaagta gagtaggcac aaatcgttta caaaaggcaa
301 aatgtatatg aaaaaaagat tgattgaact ttccgacggg ctcattccat gagtaaacga
361 ttgaatggga ttcgtttggg caacgaaatc aagtgctggt ccccttttct ctcttattga
421 attaactaat tcatttcctt ttgacttttg gatttttgga tatttttttt ggtgttgatt
481 tggcattatt caacaagaaa aaaatcaaaa tttcgataaa ttcctttttt ttgaaaatta
541 tgtgataatt atgagaacca atcctactac ttctcgtccc ggggtttcta caattgaaga
601 aaaaagtaca gggcgtatcg atcaaattat tggacccgtg ctggatgtca cttttccccg
661 gggcaagtta ccttatattt ataatgcttt ggtagtcaag agtcgagaca ctgacggtaa
721 gcaaattaat gtaacttgtg aggtacaaca attattagga aataatcgag ttagagctgt
781 agctatgagt gctacagatg ggttgatgag aggaatggaa gtgattgaca cgggagctcc
841 tctcagtgtt cctgtcggtg gagctactct tggacgaatt ttcaacgttc ttggggagcc
901 tgttgacaat ttgggtcctg tagatactag tgcaacattc cctattcata gatccgcgcc
961 cgcctttatc gagttagata cgaaattatc catctttgaa actggtatta aggtggtcga
1021 tcttttagct ccttatcggc gtggaggaaa aatcggacta tttgggggag ctggagtagg
1081 taaaacagta ctcatcatgg aattaatcaa caatattgct aaagctcacg ggggcgtatc
1141 cgtatttggc ggagtagggg aacggactcg tgaaggaaat gatctttata tggaaatgaa
1201 ggaatctgga gtaattaatg aaaaaaatct tgaggaatca aaggtagctc tagtctatgg
1261 ccaaatgaat gaaccgccag gagctcgtat gagagttggt ttgactgccc taactatggc
1321 agaatatttc cgagatgtta ataagcaaga cgtgcttcta ttcatcgata atatctttcg
1381 ttttgttcaa gcaggatcgg aggtatctgc cttattaggg agaatgccct ctgcagtggg
1441 ttatcaacct actcttagta cagaaatggg ttctttgcaa gaaagaatta cttctactaa
1501 aaagggatct ataacttcga tccaagcggt ttatgtacct gcggacgatt tgaccgaccc
1561 tgctcctgct acaacatttg cacatttgga tgctactacc gtactttcca gaggattagc
1621 ttccaaaggg atttatcctg cagtagatcc tttagattca acctcaacta tgttacaacc
1681 tcggatcgtt ggcaacgaac attatgaaac tgcgcaaaga gttaagcaaa ctttacaacg
1741 ttacaaagaa cttcaggaca ttatcgcaat tcttgggttg gatgaattat cggaggagga
1801 tcgtttaact gtagcaagag cacgaaaaat tgagcgcttc ttatcacaac cgttttttgt
1861 ggcagaagtt tttaccggtt ctccgggaaa gtatgttggt cttgcagaaa ctattagggg
1921 atttcaacta atcctttccg gagaattaga cggcctaccc gaacaggctt tttatttggt
1981 ggggaacatc gatgaagcta gcacgaaagc tataaactta gaagaggaga acaaattgaa
2041 gaaatgaaat taaatcttta cgtactgact cctaagcgaa ttatttgggc ttgtgaagtg
2101 aaagaaatca ttttatctac taatagtggc caaattggcg tattaccaaa ccacgccccc
2161 attaacacag ctgtagatat gggtcccttg agaatacgcc tcctcaacga tcaatggtta
2221 acggcggttc tgtggagcgg ttttgccaga atagttaata atgagatcat cattttagga
2281 aatgatgcgg aactgggtag tgacattgat ccggaagaag ctcaacaggc acttgaaata
2341 gccgaagcta acgtgagtag agctgagggt acgaaagaat tggttgaagc gaaggtagct
2401 ctcagacgag ctaggatacg agtcgaggct gttaattgga ttcccccatc taattgaaga
2461 caacccaacg gtttagttga tacaaagaaa aagggaagag gggtagaaaa aattattaga
2521 tagcgaagcg aagtagggcc aatgctatct agtaattttt ctacctacct acctactatt
2581 ggatttgaac caatgactcc cgccgtatga aagcaatact ctaaccactg agttaagtag
2641 gcaatttatc accacaaagg aagacccttt acttcgatcg attatagatc gaatcctttt
2701 tataagcaaa taccgcttcg ttattggtat gttattatag taaacagatc aaaggatatc
2761 ctctactatt agagaatatt catcttgaca agaaattctc tatatattaa gatatctctg
2821 acaagggcta tagctcagtt cggtagagca actcgtttac acgtgcgcca atgcttttca
2881 agggagctta ttatgcaatg aacatagtgg atcttcttgc aaaatcaacg tcttacttca
2941 tggattcgag agaataggag aacagtcgcc tgacaaatag ttggttcagt ccgattcagg
3001 tacc
//GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS RICMTB2 1485 bp ds-DNA circular ORG 06-MAR-1991
DEFINITION Rice (O.sativa) mitochondrial plasmid-like DNA (B2).
ACCESSION D00564
KEYWORDS plasmid-like DNA.
SOURCE Rice (Chinsurah Boro II) callus mitochondrial plasmid-like DNA (B2)
.
ORGANISM Mitochondrion Oryza sativa
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (bases 1 to 1485)
AUTHORS Tsutsumi,N., Yamaguchi,H., Kakiuchi,H. and Tano,S.
JOURNAL Unpublished (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Nobuhiro Tsutsumi
Lab. Radiation Genetics and Chemical Mutagenesis, Fac. Agr.,
The University of Tokyo 1-1-1 Yayoi, Bunkyo-ku
Tokyo 113
Japan
Phone: 03-812-2111 x5074
Email: c31798@tansei.cc.u-tokyo.ac.jp
ntsutsum@niguts.nig.ac.jp
FEATURES Location/Qualifiers
BASE COUNT 406 a 317 c 319 g 443 t
ORIGIN
1 ccgaggtacc agaggatagc ctttaggata tccgtcggta ggagatatcg agtcgttaga
61 gcacatatct ccgtgatccc ttccacagct aaacgtagat ctctatcttg tagtggagtg
121 tagagtaaag atataccgga gtggagtgca agaaggttat aggggagtgt ggcgcccgtt
181 gcccgccttt cgtctcggtt gaaaaacaaa actgttgctt gttttgttca ttcaagtagt
241 ggtttagccc tcgaatctat agcgaaagag ttagctcaac ctatctacta ctacccttgg
301 aaagggggtg tgtgtggtat acccgttacg actcccctcg aactgagcca ttttcatgat
361 tttacaatca aagaaagttc catacttttt tattcccggt atggagccaa cgtcgcttcg
421 ctttcgcagg acaatttcct tctggaaaaa tatccagtgg catatcccat ctagctctgg
481 gaatctttcc acaaccagcg ccttcttgtc cgatgaagtt caagtctcta acctgttctt
541 gcccgggaat gtccctcctt cgaactcgaa gtcagagttt tccggttatc cgatgggcga
601 tttatgatag ttccgatgca cttctcatgc tagcctatcg acaagatcag ggttcaacta
661 ctgttgcctc aacgggttcg ctggtcactt taacagtttt ttaagcaggc attttcgtgg
721 ttctcgtcat ataaaccagt caggtactag cgtgatttca tgcattaatc tattgctcga
781 aggaaccttt cgtcagaaaa cttattcaaa aggtacccgg tgttctagcg catttctgtt
841 aagagaagta ccccttgtag gcctgagatg ccctctatcg agcgatataa cgacggttgc
901 tatttttagg tacacgtgtt ttttgaagaa agcactttta aaaaggaaag tagtaaaatg
961 aaaatactca atttaataaa tcctaaatta tctgtggcat tgaattatga aagtaaacac
1021 tgaaagttta ccacttacaa aagtaaatgt actacccgac taaaaggagg aaatccaatt
1081 agaggtgtaa actcttttct tttctatcga gtagattccc ttttatttat aaatagtaaa
1141 ctaacgaata gataattagt attccctcat ataattagta ctagctgttc cttcattaat
1201 ggtacgtgta ttcacgaggg ctctgcttcg ctctattcca cctcccgggt gtatggaaaa
1261 atctttaaaa gaaataaatc atgcggtact tcttgtttta atcactcttc ctttcctccc
1321 ggaactgggg aagaaccctt ctgaaaagga atggaggtct atctttactc ggagtgcaac
1381 gcagagatag agatcgaaga gccgctgtgc ttggggacga ggggactcac tcaacctcaa
1441 agttgaggga atcccgaagc ctcggaatct agcgttagcg taagg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS RICPCNAGEN 4556 bp ds-DNA PLN 22-MAY-1991
DEFINITION Rice (O. sativa) gene for proliferating cell nuclear antigen (PCNA)
ACCESSION X54046
KEYWORDS proliferating cell nuclear antigen.
SOURCE Oryza sativa DNA.
ORGANISM Oryza sativa
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (bases 1 to 4556)
AUTHORS Suzuka,I.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 4556)
AUTHORS Suzuka,I., Hata,S., Matsuoka,M., Kosugi,S. and Hashimoto,J.
TITLE Highly conserved structure of proliferating cell nuclear antigen
(DNA polymerase delta auxilairy protein) gene in plants
JOURNAL Eur. J. Biochem. 195, 571-575 (1991)
STANDARD full automatic
COMMENT From EMBL 26 entry OSPCNAGEN; dated 26-MAR-1991.
FEATURES Location/Qualifiers
mRNA join(1510..1896,1982..2134,2231..2328,3046..>4556)
/note="proliferating cell nuclear antigen"
CDS join(1578..1896,1982..2134,2231..2328,3046..3267)
/product="proliferating cell nuclear antigen"
/codon_start=1578
exon 1510..1896
/number=1
exon 1510..1896
intron 1897..1981
/number=1
exon 1982..2134
/number=2
exon 1982..2134
exon 1982..2134
intron 2135..2230
/number=2
exon 2231..2328
/number=3
exon 2231..2328
exon 2231..2328
intron 2329..3045
/number=3
exon 3046..>4556
/number=4
exon 3046..>4556
BASE COUNT 1253 a 999 c 952 g 1352 t
ORIGIN
1 aaaccggata tatgagatgt cctccgaatc aatgtactcc ctccgtccaa aaaaaaagac
61 aaaccttagt ttccgtgcca acgtttgacc gtccgtctta tttgaaaaaa ttatgaaaaa
121 aatataagtc acgcataaag tattaatcat gttttatcat ctaacaacaa tgaaaatact
181 aattatagtt ttttttataa gatggacagt taaatgttgg cacgaaaact catggtttat
241 cttttttttt gggacggagg gagtagacag tagactgaca aatcacaggc aactctgccc
301 tgcttgatgt tctgacgggc agattgtatc gtactactcc tccaggaaaa aaaatatttg
361 tttatgtcca gattcatatt aaaaaatact ttattttgag attgggggac tagtaggatg
421 atcaaagaaa agagagcgtg gtgcattgct aagaaacacc aaaatgctca atacttatac
481 acggcgtgga aacaagaaag cctcggtagg catgggttgt ggagtggatc gtgggccaga
541 ttgatcgtgg atcgctcgct ctcttcataa accaaaaagc tgggccggag aacgtcggcc
601 acctaatggg ccgagagcag tgacgcgttg agccagattc cggttcttac ggaagtggaa
661 gagctggctg cagcccaagc ccacctaccg ttctggccgg ttcgcggtga aacttaggcc
721 caaggaggcg gcacggtgcg gtcgactttt tccactcgtt ggatcgaatc gacggttggg
781 atcaaactgt acccactcca tttccgtgga aactaattat tttcatctaa aaatatacat
841 tttattttta tctgctccac tttctgtttt tttttcctgg tgaacgaacg caatttcatg
901 cgtaaagaac ggcaaagaaa aattaaattt gatgcaaaac gtataattat ttcacctgta
961 ccgtacttac tttcggccat tattcatgta gtagtaggat acttcgaaca caaattcata
1021 catacttcct ccgtttcaca atgtaagtca ttctagcatt tttcacattt atattgatga
1081 taaaatttta tctagattct aaatatgaga aatgctagaa tgacttacat tgtgaaatgg
1141 agagagtaaa aaagaaaaat aattcaaaat cattggaggg aaatggccaa gctgtgcggt
1201 cagcgagatg gcgcgaaagg caattccatc tcccgcccag ctcccagaac acccgccctt
1261 ttccaaatca ccaagaccaa gcacccgtca tccacttttc ccccactgcc aggtgggccc
1321 gtactccacc atggtcccac atgtcagctg aatcttccac tgcaagaagc gggaaacatt
1381 tcgggtggag gcgggtttcc ccccaatttc tccctccatt tttttttcgt ctcgcgtccc
1441 ccaaacccct ccctattaat ctcccccttc cccctttctt cccctcgccg ccgcctcctc
1501 ctcccaaacc ccacaagcga atcctagggt ttctcgcctc gccgccgcat cgccgccggg
1561 aagtctccgc cgccgccatg ttggagctga ggcttgtgca ggggagcctg ctgaagaagg
1621 tgctggaggc gatccgggag ctggtgacgg acgccaactt cgactgctcg gggacggggt
1681 tctcgctgca ggccatggat tccagccacg tcgccctcgt cgcgctgctc ctccgctccg
1741 aggggttcga gcactaccgc tgcgaccgca acctctccat ggggatgaac ctcaacaaca
1801 tggccaagat gctccgctgc gcgggcaacg acgacatcat caccatcaag gccgacgatg
1861 gctccgacac cgtcaccttc atgttcgagt cgcccagtga gtagtactag tctcaatcgt
1921 ctcgtgccct cacgtgttct tgatttgtgt gaccttgatt aatttgtgct tggatgaata
1981 gaccaagata agattgcgga tttcgagatg aagctgatgg acatcgacag cgagcacctc
2041 ggcatccctg actccgagta ccaggccatc gtccgcatgc cgtcctctga gttttccagg
2101 atctgcaagg atctgagcag catcggagac actggtgtgt gtgattatcc tcccgtggtt
2161 tctgcagacg cttgttgtta atttgtttct gtggcttgtt cttaaatctt taaactgctt
2221 ggcattccag ttatcatctc ggtgaccaag gagggtgtta agttctcgac cgctggagat
2281 attggaactg ccaacattgt ctgcaggcag aacaagactg ttgacaaggt aattaatcta
2341 tcgatggtgc cttctcaaac tgttactaac ttggtctacg atacctgtca tgtttgtaaa
2401 cttggaatgc cgtttgagag tcaagaaaac tacagtagca gagatggttc ttttgtactc
2461 aaatattgcg ctgttaacaa gtaatcacga gtacagcagc tagacagcta atttccttag
2521 gaaacattac agctaatttt ttcatggaga acaatgtagt gtctgtacta aaagaattat
2581 ttggttcagt tacatgatag catttgagct acatctcggt caccctagtt tgcttgttaa
2641 tgtttctgtt atgtgtttgc aatgtgtatg gtcctgggtc aataattggg ttacctgtat
2701 ctttaagtaa ctggcttgca tcagtcctat agttgtgctc attcatctgg ttatccagag
2761 taaagtttgt atctaacaat ttagtagtaa aactagtaaa aggagttttt tttttttgct
2821 gcaagggatc tgaaatcctt tagtcaaatt aagacatttc taagcatgaa taaagtatga
2881 atcctattat ccccatcttg catgtcaata tgtcatctga tcattatgct aactgcaaaa
2941 ctttctgtta ttctttcata ctggagtacc ggtttaggat catgcagcaa tgagtacagt
3001 aagtgataat cagtgtctaa tggatgtttt tttgggtcat tgcagccaga agatgctaca
3061 atcatagaga tgcaggaacc ggtgtcacta acctttgccc tgaggtacat gaactccttc
3121 accaaggcaa gcccgctctc tgaacaagtt acaatcagcc tttcatctga gctgccagtg
3181 gtggttgagt ataagattgc agagatgggc tacattagat tttatctggc gccaaagatt
3241 gaagaagatg aggaaatgaa gtcgtgattg tcgcataagg atatgacaaa atacccccta
3301 gtcttcagac catcatcctt tgcttaacaa ttgtttgtaa gcaaaatgat gttatgctta
3361 tcatcgctta cgacggaatg cttttacctt tgtatctgtg acttctgtaa atccttggat
3421 ttacagtgat gaatgttagg tttagtagat ttgtgagttt atgactgcat tgctgtagca
3481 tgattgtgct gctgtttgtt tgttcaattc ggttgttaca tatttgttgg gagaggagct
3541 tcctttgggt tgacactaac ttcatcagtg tttggaccca gaattgctat catcctcaag
3601 ctgtgaaagc caaatttcca tctttgagaa ggcttccaaa tttccatcta ttttaggctc
3661 tctgttgtca cctgtgataa ccgataagaa acaaaacaag ctatgaaaaa tgattttttt
3721 taaaacagtg gagacaaact atgcagcctc aattagtggc cacaggcatc tcacatctcc
3781 caattccggc ctacattggc aatatagatt tgatttgatg gtattttcct atttcctaac
3841 atcggatatg ttcattgtta ctggcagctt atagatagat ctccctttac aaagcacttc
3901 acaccagagt acaatggcac aacaagatat aactactgtt ctagaggtaa aatgctagat
3961 taggtgctgc tcatgatcac cagtcaccga ttttgatctg ctctgcactc cacaagtcca
4021 attggaaatt agatcatggg tttactttga ttctgccctc gaccctaact ttggtgtcac
4081 tggtttgcaa cctgtccaag attggaagct gaatcgtcag cttataatct gaaacaatta
4141 acacctttgt cagaattctg gagaacagtg tcacaaactg atttactagt tttaataagt
4201 gaaatttgct ctttgcatag tctaataatt gcatgttcat agtctaattg caaattatgt
4261 agtctgctgt taatctacct acagctgaat ttagggtcct ttctctattt ctcagaataa
4321 gatagtcaga ccaagaaacc ttgctgctgc tatgggacat tcatttatta ctaaacatgt
4381 taatgaaaaa acaagataaa ataggcgcac gctaatcttt aggccatcca aatccagttt
4441 ccttaaaata tgcttatgat cacaggaaag tattatggtg tactataaag aaataatcct
4501 atctataagg aaaatggagc ctactttcat tatactataa ataagtggca aaagaa
//