GenBank-Updates@genbank.bio.net (01/16/91)
LOCUS HPCJCG 9413 bp ss-RNA VRL 16-JAN-1991
DEFINITION Hepatitis C virus (HCV-J) complete genome.
ACCESSION D90208
KEYWORDS complete genome; polyprotein.
SOURCE Hepatitis C virus (strain J) isolated from human plasma, cDNA to
viral RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 9413)
AUTHORS Kato,N., Hijikata,M., Ootsuyama,Y., Nakagawa,M., Ohkoshi,S.,
Sugimura,T. and Shimotohno,K.
TITLE Molecular cloning of the human hepatitis C virus genome from
Japanese patients with non-A, non-B hepatitis
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 9524-9528 (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Nobuyuki Kato
National Cancer Center Research Institute
5-1-1 Tsukiji, Chuo-ku
Tokyo 104
Japan
Phone: 03-542-2511 x4701
Fax: 03-545-3567
FEATURES Location/Qualifiers
CDS 330..9362
/note="viral polyprotein"
BASE COUNT 1886 a 2816 c 2694 g 2017 t
ORIGIN
1 ttgggggcga cactccacca tagatcactc ccctgtgagg aactactgtc ttcacgcaga
61 aagcgtctag ccatggcgtt agtatgagtg ttgtgcagcc tccaggaccc cccctcccgg
121 gagagccata gtggtctgcg gaaccggtga gtacaccgga attgccagga cgaccgggtc
181 ctttcttgga tcaacccgct caatgcctgg agatttgggc gtgcccccgc gagactgcta
241 gccgagtagt gttgggtcgc gaaaggcctt gtggtactgc ctgatagggt gcttgcgagt
301 gccccgggag gtctcgtaga ccgtgcatca tgagcacaaa tcctaaacct caaagaaaaa
361 ccaaacgtaa caccaaccgc cgcccacagg acgttaagtt cccgggcggt ggtcagatcg
421 ttggtggagt ttacctgttg ccgcgcaggg gccccaggtt gggtgtgcgc gcgactagga
481 agacttccga gcggtcgcaa cctcgtggaa ggcgacaacc tatccccaag gctcgccggc
541 ccgagggtag gacctgggct cagcccgggt acccttggcc cctctatggc aacgagggta
601 tggggtgggc aggatggctc ctgtcacccc gtggctctcg gcctagttgg ggccccacag
661 acccccggcg taggtcgcgt aatttgggta aggtcatcga tacccttaca tgcggcttcg
721 ccgacctcat ggggtacatt ccgcttgtcg gcgcccccct agggggcgct gccagggccc
781 tggcacatgg tgtccgggtt ctggaggacg gcgtgaacta tgcaacaggg aatctgcccg
841 gttgctcttt ctctatcttc ctcttagctt tgctgtcttg tttgaccatc ccagcttccg
901 cttacgaggt gcgcaacgtg tccgggatat accatgtcac gaacgactgc tccaactcaa
961 gtattgtgta tgaggcagcg gacatgatca tgcacacccc cgggtgcgtg ccctgcgtcc
1021 gggagagtaa tttctcccgt tgctgggtag cgctcactcc cacgctcgcg gccaggaaca
1081 gcagcatccc caccacgaca atacgacgcc acgtcgattt gctcgttggg gcggctgctc
1141 tctgttccgc tatgtacgtt ggggatctct gcggatccgt ttttctcgtc tcccagctgt
1201 tcaccttctc acctcgccgg tatgagacgg tacaagattg caattgctca atctatcccg
1261 gccacgtatc aggtcaccgc atggcttggg atatgatgat gaactggtca cctacaacgg
1321 ccctagtggt atcgcagcta ctccggatcc cacaagccgt cgtggacatg gtggcggggg
1381 cccactgggg tgtcctagcg ggccttgcct actattccat ggtggggaac tgggctaagg
1441 tcttgattgt gatgctactc tttgctggcg ttgacgggca cacccacgtg acagggggaa
1501 gggtagcctc cagcacccag agcctcgtgt cctggctctc acaaggccca tctcagaaaa
1561 tccaactcgt gaacaccaac ggcagctggc acatcaacag gaccgctctg aattgcaatg
1621 actccctcca aactgggttc attgctgcgc tgttctacgc acacaggttc aacgcgtccg
1681 ggtgcccaga gcgcatggct agctgccgcc ccatcgatga gttcgctcag gggtggggtc
1741 ccatcactca tgatatgcct gagagctcgg accagaggcc atattgctgg cactacgcgc
1801 ctcgaccgtg cgggatcgtg cctgcgtcgc aggtgtgtgg tccagtgtat tgcttcactc
1861 cgagccctgt tgtagtgggg acgaccgatc gtttcggcgc tcctacgtat agctgggggg
1921 agaatgagac agacgtgctg ctacttagca acacgcggcc gcctcaaggc aactggtttg
1981 ggtgcacgtg gatgaacagc actgggttca ccaagacgtg cgggggccct ccgtgcaaca
2041 tcgggggggt cggcaacaac accttggtct gccccacgga ttgcttccgg aagcaccccg
2101 aggccactta cacaaagtgt ggctcggggc cctggttgac acccaggtgc atggttgact
2161 acccatacag gctctggcac tacccctgca ctgttaactt taccgtcttt aaggtcagga
2221 tgtatgtggg gggcgtggag cacaggctca atgctgcatg caattggact cgaggagagc
2281 gctgtgactt ggaggacagg gataggtcag aactcagccc gctgctgctg tctacaacag
2341 agtggcagat actgccctgt tccttcacca ccctaccggc cctgtccact ggcttgatcc
2401 atcttcaccg gaacatcgtg gacgtgcaat acctgtacgg tatagggtcg gcagttgtct
2461 cctttgcaat caaatgggag tatatcctgt tgcttttcct tcttctggcg gacgcgcgcg
2521 tctgtgcctg cttgtggatg atgctgctga tagcccaggc tgaggccacc ttagagaacc
2581 tggtggtcct caatgcggcg tctgtggccg gagcgcatgg ccttctctcc ttcctcgtgt
2641 tcttctgcgc cgcctggtac atcaaaggca ggctggtccc tggggcggca tatgctctct
2701 atggcgtatg gccgttgctc ctgctcttgc tggccttacc accacgagct tatgccatgg
2761 accgagagat ggctgcatcg tgcggaggcg cggtttttgt aggtctggta ctcttgacct
2821 tgtcaccata ctataaggtg ttcctcgcta ggctcatatg gtggttacaa tattttatca
2881 ccagagccga ggcgcacttg caagtgtggg tcccccctct caatgttcgg ggaggccgcg
2941 atgccatcat cctccttaca tgcgcggtcc atccagagct aatctttgac atcaccaaac
3001 tcctgctcgc catactcggt ccgctcatgg tgctccaggc tggcataact agagtgccgt
3061 actttgtacg cgctcagggg ctcatccgtg catgcatgtt agtgcggaag gtcgctggag
3121 gccactatgt ccaaatggcc ttcatgaagc tggccgcgct gacaggtacg tacgtatatg
3181 accatcttac tccactgcgg gattgggccc acgcgggcct acgagacctt gcggtggcag
3241 tagagcccgt cgtcttctct gacatggaga ctaaactcat cacctggggg gcagacaccg
3301 cggcgtgtgg ggacatcatc tcgggtctac cagtctccgc ccgaaggggg aaggagatac
3361 ttctaggacc ggccgatagt tttggagagc aggggtggcg gctccttgcg cctatcacgg
3421 cctattccca acaaacgcgg ggcctgcttg gctgtatcat cactagcctc acaggtcggg
3481 acaagaacca ggtcgatggg gaggttcagg tgctctccac cgcaacgcaa tctttcctgg
3541 cgacctgcgt caatggcgtg tgttggaccg tctaccatgg tgccggctcg aagaccctgg
3601 ccggcccgaa gggtccaatc acccaaatgt acaccaatgt agaccaggac ctcgtcggct
3661 ggccggcgcc ccccggggcg cgctccatga caccgtgcac ctgcggcagc tcggaccttt
3721 acttggtcac gaggcatgct gatgtcgttc cggtgcgccg gcggggcgac agcaggggga
3781 gcctgctttc ccccaggccc atctcctacc tgaagggctc ctcgggtgga ccactgcttt
3841 gcccttcggg gcacgttgta ggcatcttcc gggctgctgt gtgcacccgg ggggttgcga
3901 aggcggtgga cttcataccc gttgagtcta tggaaactac catgcggtct ccggtcttca
3961 cagacaactc atcccctccg gccgtaccgc aaacattcca agtggcacat ttacacgctc
4021 ccactggcag cggcaagagc accaaagtgc cggctgcata tgcagcccaa gggtacaagg
4081 tgctcgtcct aaacccgtcc gttgccgcca cattgggctt tggagcgtat atgtccaagg
4141 cacatggcat cgagcctaac atcagaactg gggtaaggac catcaccacg ggcggcccca
4201 tcacgtactc cacctattgc aagttccttg ccgacggtgg atgctccggg ggcgcctatg
4261 acatcataat atgtgatgaa tgccactcaa ctgactcgac taccatcttg ggcatcggca
4321 cagtcctgga tcaggcagag acggctggag cgcggctcgt cgtgctcgcc accgccacgc
4381 ctccgggatc gatcaccgtg ccacacccca acatcgagga agtggccctg tccaacactg
4441 gagagattcc cttctatggc aaagccatcc ccattgaggc catcaagggg ggaaggcatc
4501 tcatcttctg ccattccaag aagaagtgtg acgagctcgc cgcaaagctg acaggcctcg
4561 gactcaatgc tgtagcgtat taccggggtc tcgatgtgtc cgtcataccg actagcggag
4621 acgtcgttgt cgtggcaaca gacgctctaa tgacgggttt taccggcgac tttgactcag
4681 tgatcgactg caacacatgt gtcacccaga cagtcgattt cagcttggat cccaccttca
4741 ccattgagac gacaacgctg ccccaagacg cggtgtcgcg tgcgcagcgg cgaggtagga
4801 ctggcagggg caggagtggc atctacaggt ttgtgactcc aggagaacgg ccctcaggca
4861 tgttcgactc ctcggtcctg tgtgagtgct atgacgcagg ctgcgcttgg tatgagctca
4921 cgcccgctga gacctcggtt aggttgcggg cttacctaaa tacaccaggg ttgcccgtct
4981 gccaggacca cctagagttc tgggagagcg tcttcacagg cctcacccac atagatgccc
5041 acttcttgtc ccagaccaaa caggcaggag acaacctccc ctacctggta gcataccaag
5101 ccacagtgtg cgccagggct caggctccac ctccatcgtg ggaccaaatg tggaagtgtc
5161 tcatacggct aaagcccaca ctgcatgggc caacgcccct gctgtacagg ctaggagccg
5221 ttcaaaatga ggtcactctc acacacccca taaccaaata catcatggca tgcatgtcgg
5281 ctgacctgga ggtcgtcact agcacctggg tgctagtagg cggagtcctt gcggctctgg
5341 ccgcgtactg cctgacgaca ggcagcgtgg tcattgtggg caggatcatc ttgtccggga
5401 ggccagctgt tattcccgac agggaagtcc tctaccagga gttcgatgag atggaagagt
5461 gtgcttcaca cctcccttac atcgagcaag gaatgcagct cgccgagcaa ttcaaacaga
5521 aggcgctcgg attgctgcaa acagccacca agcaagcgga ggctgctgct cccgtggtgg
5581 agtccaagtg gcgagccctt gaggtcttct gggcgaaaca catgtggaac ttcatcagcg
5641 ggatacagta cttggcaggc ctatccactc tgcctggaaa ccccgcgata gcatcattga
5701 tggcttttac agcctctatc accagcccgc tcaccaccca aaataccctc ctgtttaaca
5761 tcttgggggg atgggtggct gcccaactcg ctccccccag cgctgcttcg gctttcgtgg
5821 gcgccggcat tgccggtgcg gccgttggca gcataggtct cgggaaggta cttgtggaca
5881 ttctggcggg ctatggggcg ggggtggctg gcgcactcgt ggcctttaag gtcatgagcg
5941 gcgagatgcc ctccactgag gatctggtta atttactccc tgccatcctt tctcctggcg
6001 ccctggttgt cggggtcgtg tgcgcagcaa tactgcgtcg gcacgtgggc ccgggagagg
6061 gggctgtgca gtggatgaac cggctgatag cgttcgcttc gcggggtaac cacgtctccc
6121 ccacgcacta tgtgcccgag agcgacgccg cggcgcgtgt tactcagatc ctctccagcc
6181 ttaccatcac tcagttgctg aagaggcttc atcagtggat taatgaggac tgctccacgc
6241 cttgttccgg ctcgtggcta aaggatgttt gggactggat atgcacggtg ttgagtgact
6301 tcaagacttg gctccagtcc aagctcctgc cgcggttacc gggactccct ttcctgtcat
6361 gccaacgcgg gtacaaggga gtctggcggg gggatggcat catgcaaacc acctgcccat
6421 gtggagcaca gatcaccgga catgtcaaaa atggctccat gaggattgtt gggccaaaaa
6481 cctgcagcaa cacgtggcat ggaacattcc ccatcaacgc atacaccacg ggcccctgca
6541 cgccctcccc agcgccgaac tattccaggg cgctgtggcg ggtggctgct gaggagtacg
6601 tggaggttac gcgggtgggg gatttccact acgtgacggg catgaccact gacaacgtga
6661 aatgcccatg ccaggttcca gcccctgaat ttttcacgga ggtggatgga gtacggttgc
6721 acaggtatgc tccagtgtgc aaacctctcc tacgagagga ggtcgtattc caggtcgggc
6781 tcaaccagta cctggtcggg tcacagctcc catgtgagcc cgaaccggat gtggcagtgc
6841 tcacttccat gctcaccgac ccctctcata ttacagcaga gacggccaag cgtaggctgg
6901 ccagggggtc tcccccctcc ttggccagct cttcagctag ccagttgtct gcgccttctt
6961 tgaaggcgac atgtactacc catcatgact ccccggacgc tgacctcatc gaggccaacc
7021 tcctgtggcg gcaggagatg ggcgggaaca tcacccgtgt ggagtcagaa aataaggtgg
7081 taatcctgga ctctttcgat ccgattcggg cggtggagga tgagagggaa atatccgtcc
7141 cggcggagat cctgcgaaaa cccaggaagt tccccccagc gttgcccata tgggcacgcc
7201 cggattacaa ccctccactg ctagagtcct ggaaggaccc ggactacgtc cccccggtgg
7261 tacacgggtg ccctttgcca tctaccaagg cccccccaat accacctcca cggaggaaga
7321 ggacggttgt cctgacagag tccaccgtgt cttctgcctt ggcggagctc gctactaaga
7381 cctttggcag ctccgggtcg tcggccgttg acagcggcac ggcgactggc cctcccgatc
7441 aggcctccga cgacggcgac aaaggatccg acgttgagtc gtactcctcc atgccccccc
7501 tcgagggaga gccaggggac cccgacctca gcgacgggtc ttggtctacc gtgagcgggg
7561 aagctggtga ggacgtcgtc tgctgctcaa tgtcctatac atggacaggt gccttgatca
7621 cgccatgcgc tgcggaggag agcaagttgc ccatcaatcc gttgagcaac tctttgctgc
7681 gtcaccacag tatggtctac tccacaacat ctcgcagcgc aagtctgcgg cagaagaagg
7741 tcacctttga cagactgcaa gtcctggacg accactaccg ggacgtgctc aaggagatga
7801 aggcgaaggc gtccacagtt aaggctaggc ttctatctat agaggaggcc tgcaaactga
7861 cgcccccaca ttcggccaaa tccaaatttg gctacggggc gaaggacgtc cggagcctat
7921 ccagcagggc cgtcaaccac atccgctccg tgtgggagga cttgctggaa gacactgaaa
7981 caccaattga taccaccatc atggcaaaaa atgaggtttt ctgcgtccaa ccagagaaag
8041 gaggccgcaa gccagctcgc cttatcgtat tcccagacct gggggtacgt gtatgcgaga
8101 agatggccct ttacgacgtg gtctccaccc ttcctcaggc cgtgatgggc ccctcatacg
8161 gattccagta ctctcctggg cagcgggtcg agttcctggt gaatacctgg aaatcaaaga
8221 aatgccctat gggcttctca tatgacaccc gctgctttga ctcaacggtc actgagaatg
8281 acatccgtac tgaggaatca atttaccaat gttgtgactt ggcccccgaa gccaggcagg
8341 ccataaggtc gctcacagag cggctttatg tcgggggtcc cctgactaat tcgaaggggc
8401 agaactgcgg ttatcgccgg tgccgcgcaa gtggcgtgct gacgactagc tgcggcaaca
8461 ccctcacatg ttacttgaag gccactgcgg cctgtcgagc tgcaaagctc caggactgca
8521 cgatgctcgt gaacggagac gaccttgtcg ttatctgtga gagtgcggga acccaggagg
8581 atgcggcggc cctacgagcc ttcacggagg ctatgactag gtattccgcc ccccccgggg
8641 acccgcccca accagaatac gacttggagc tgataacgtc atgctcctcc aatgtgtcgg
8701 tcgcgcacga tgcatccggc aaaagggtgt actacctcac ccgtgacccc accacccccc
8761 tcgcacgggc tgcgtgggag acagttagac acactccagt caactcctgg ctaggcaata
8821 tcatcatgta tgcgcccacc ctatgggcga ggatgattct gatgactcat ttcttctcta
8881 tccttctagc tcaggagcaa cttgaaaaag ccctggattg tcagatctac ggggcctgtt
8941 actccattga gccacttgac ctacctcaga tcattgaacg actccatggt cttagcgcat
9001 tttcactcca cagttactct ccaggtgaga tcaatagggt ggcttcatgc ctcaggaaac
9061 ttggggtacc gcctttgcga gtctggagac atcgggccag aagtgtccgc gctaagctac
9121 tgtcccaggg ggggagggct gccacttgcg gcaagtacct cttcaactgg gcagtaaaga
9181 ccaagcttaa actcactcca atcccggctg cgtcccagct agacttgtcc ggctggttcg
9241 ttgctggtta caacggggga gacatatatc acagcctgtc tcgtgcccga ccccgttggt
9301 tcatgttgtg cctactccta ctttctgtag gggtaggcat ctacctgctc cccaaccggt
9361 gaacggggag ctaaccactc caggccaata ggccattccc tttttttttt ttc
//GenBank-Updates@genbank.bio.net (01/30/91)
LOCUS HPCJCG 9413 bp ss-RNA VRL 30-JAN-1991
DEFINITION Hepatitis C virus (HCV-J) complete genome.
ACCESSION D90208
KEYWORDS complete genome; polyprotein.
SOURCE Hepatitis C virus (strain J) isolated from human plasma, cDNA to
viral RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 9413)
AUTHORS Kato,N., Hijikata,M., Ootsuyama,Y., Nakagawa,M., Ohkoshi,S.,
Sugimura,T. and Shimotohno,K.
TITLE Molecular cloning of the human hepatitis C virus genome from
Japanese patients with non-A, non-B hepatitis
JOURNAL Proc. Natl. Acad. Sci. U.S.A 87, 9524-9528 (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Nobuyuki Kato
National Cancer Center Research Institute
5-1-1 Tsukiji, Chuo-ku
Tokyo 104
Japan
Phone: 03-542-2511 x4701
Fax: 03-545-3567
FEATURES Location/Qualifiers
CDS 330..9362
/note="viral polyprotein"
BASE COUNT 1886 a 2816 c 2694 g 2017 t
ORIGIN
1 ttgggggcga cactccacca tagatcactc ccctgtgagg aactactgtc ttcacgcaga
61 aagcgtctag ccatggcgtt agtatgagtg ttgtgcagcc tccaggaccc cccctcccgg
121 gagagccata gtggtctgcg gaaccggtga gtacaccgga attgccagga cgaccgggtc
181 ctttcttgga tcaacccgct caatgcctgg agatttgggc gtgcccccgc gagactgcta
241 gccgagtagt gttgggtcgc gaaaggcctt gtggtactgc ctgatagggt gcttgcgagt
301 gccccgggag gtctcgtaga ccgtgcatca tgagcacaaa tcctaaacct caaagaaaaa
361 ccaaacgtaa caccaaccgc cgcccacagg acgttaagtt cccgggcggt ggtcagatcg
421 ttggtggagt ttacctgttg ccgcgcaggg gccccaggtt gggtgtgcgc gcgactagga
481 agacttccga gcggtcgcaa cctcgtggaa ggcgacaacc tatccccaag gctcgccggc
541 ccgagggtag gacctgggct cagcccgggt acccttggcc cctctatggc aacgagggta
601 tggggtgggc aggatggctc ctgtcacccc gtggctctcg gcctagttgg ggccccacag
661 acccccggcg taggtcgcgt aatttgggta aggtcatcga tacccttaca tgcggcttcg
721 ccgacctcat ggggtacatt ccgcttgtcg gcgcccccct agggggcgct gccagggccc
781 tggcacatgg tgtccgggtt ctggaggacg gcgtgaacta tgcaacaggg aatctgcccg
841 gttgctcttt ctctatcttc ctcttagctt tgctgtcttg tttgaccatc ccagcttccg
901 cttacgaggt gcgcaacgtg tccgggatat accatgtcac gaacgactgc tccaactcaa
961 gtattgtgta tgaggcagcg gacatgatca tgcacacccc cgggtgcgtg ccctgcgtcc
1021 gggagagtaa tttctcccgt tgctgggtag cgctcactcc cacgctcgcg gccaggaaca
1081 gcagcatccc caccacgaca atacgacgcc acgtcgattt gctcgttggg gcggctgctc
1141 tctgttccgc tatgtacgtt ggggatctct gcggatccgt ttttctcgtc tcccagctgt
1201 tcaccttctc acctcgccgg tatgagacgg tacaagattg caattgctca atctatcccg
1261 gccacgtatc aggtcaccgc atggcttggg atatgatgat gaactggtca cctacaacgg
1321 ccctagtggt atcgcagcta ctccggatcc cacaagccgt cgtggacatg gtggcggggg
1381 cccactgggg tgtcctagcg ggccttgcct actattccat ggtggggaac tgggctaagg
1441 tcttgattgt gatgctactc tttgctggcg ttgacgggca cacccacgtg acagggggaa
1501 gggtagcctc cagcacccag agcctcgtgt cctggctctc acaaggccca tctcagaaaa
1561 tccaactcgt gaacaccaac ggcagctggc acatcaacag gaccgctctg aattgcaatg
1621 actccctcca aactgggttc attgctgcgc tgttctacgc acacaggttc aacgcgtccg
1681 ggtgcccaga gcgcatggct agctgccgcc ccatcgatga gttcgctcag gggtggggtc
1741 ccatcactca tgatatgcct gagagctcgg accagaggcc atattgctgg cactacgcgc
1801 ctcgaccgtg cgggatcgtg cctgcgtcgc aggtgtgtgg tccagtgtat tgcttcactc
1861 cgagccctgt tgtagtgggg acgaccgatc gtttcggcgc tcctacgtat agctgggggg
1921 agaatgagac agacgtgctg ctacttagca acacgcggcc gcctcaaggc aactggtttg
1981 ggtgcacgtg gatgaacagc actgggttca ccaagacgtg cgggggccct ccgtgcaaca
2041 tcgggggggt cggcaacaac accttggtct gccccacgga ttgcttccgg aagcaccccg
2101 aggccactta cacaaagtgt ggctcggggc cctggttgac acccaggtgc atggttgact
2161 acccatacag gctctggcac tacccctgca ctgttaactt taccgtcttt aaggtcagga
2221 tgtatgtggg gggcgtggag cacaggctca atgctgcatg caattggact cgaggagagc
2281 gctgtgactt ggaggacagg gataggtcag aactcagccc gctgctgctg tctacaacag
2341 agtggcagat actgccctgt tccttcacca ccctaccggc cctgtccact ggcttgatcc
2401 atcttcaccg gaacatcgtg gacgtgcaat acctgtacgg tatagggtcg gcagttgtct
2461 cctttgcaat caaatgggag tatatcctgt tgcttttcct tcttctggcg gacgcgcgcg
2521 tctgtgcctg cttgtggatg atgctgctga tagcccaggc tgaggccacc ttagagaacc
2581 tggtggtcct caatgcggcg tctgtggccg gagcgcatgg ccttctctcc ttcctcgtgt
2641 tcttctgcgc cgcctggtac atcaaaggca ggctggtccc tggggcggca tatgctctct
2701 atggcgtatg gccgttgctc ctgctcttgc tggccttacc accacgagct tatgccatgg
2761 accgagagat ggctgcatcg tgcggaggcg cggtttttgt aggtctggta ctcttgacct
2821 tgtcaccata ctataaggtg ttcctcgcta ggctcatatg gtggttacaa tattttatca
2881 ccagagccga ggcgcacttg caagtgtggg tcccccctct caatgttcgg ggaggccgcg
2941 atgccatcat cctccttaca tgcgcggtcc atccagagct aatctttgac atcaccaaac
3001 tcctgctcgc catactcggt ccgctcatgg tgctccaggc tggcataact agagtgccgt
3061 actttgtacg cgctcagggg ctcatccgtg catgcatgtt agtgcggaag gtcgctggag
3121 gccactatgt ccaaatggcc ttcatgaagc tggccgcgct gacaggtacg tacgtatatg
3181 accatcttac tccactgcgg gattgggccc acgcgggcct acgagacctt gcggtggcag
3241 tagagcccgt cgtcttctct gacatggaga ctaaactcat cacctggggg gcagacaccg
3301 cggcgtgtgg ggacatcatc tcgggtctac cagtctccgc ccgaaggggg aaggagatac
3361 ttctaggacc ggccgatagt tttggagagc aggggtggcg gctccttgcg cctatcacgg
3421 cctattccca acaaacgcgg ggcctgcttg gctgtatcat cactagcctc acaggtcggg
3481 acaagaacca ggtcgatggg gaggttcagg tgctctccac cgcaacgcaa tctttcctgg
3541 cgacctgcgt caatggcgtg tgttggaccg tctaccatgg tgccggctcg aagaccctgg
3601 ccggcccgaa gggtccaatc acccaaatgt acaccaatgt agaccaggac ctcgtcggct
3661 ggccggcgcc ccccggggcg cgctccatga caccgtgcac ctgcggcagc tcggaccttt
3721 acttggtcac gaggcatgct gatgtcgttc cggtgcgccg gcggggcgac agcaggggga
3781 gcctgctttc ccccaggccc atctcctacc tgaagggctc ctcgggtgga ccactgcttt
3841 gcccttcggg gcacgttgta ggcatcttcc gggctgctgt gtgcacccgg ggggttgcga
3901 aggcggtgga cttcataccc gttgagtcta tggaaactac catgcggtct ccggtcttca
3961 cagacaactc atcccctccg gccgtaccgc aaacattcca agtggcacat ttacacgctc
4021 ccactggcag cggcaagagc accaaagtgc cggctgcata tgcagcccaa gggtacaagg
4081 tgctcgtcct aaacccgtcc gttgccgcca cattgggctt tggagcgtat atgtccaagg
4141 cacatggcat cgagcctaac atcagaactg gggtaaggac catcaccacg ggcggcccca
4201 tcacgtactc cacctattgc aagttccttg ccgacggtgg atgctccggg ggcgcctatg
4261 acatcataat atgtgatgaa tgccactcaa ctgactcgac taccatcttg ggcatcggca
4321 cagtcctgga tcaggcagag acggctggag cgcggctcgt cgtgctcgcc accgccacgc
4381 ctccgggatc gatcaccgtg ccacacccca acatcgagga agtggccctg tccaacactg
4441 gagagattcc cttctatggc aaagccatcc ccattgaggc catcaagggg ggaaggcatc
4501 tcatcttctg ccattccaag aagaagtgtg acgagctcgc cgcaaagctg acaggcctcg
4561 gactcaatgc tgtagcgtat taccggggtc tcgatgtgtc cgtcataccg actagcggag
4621 acgtcgttgt cgtggcaaca gacgctctaa tgacgggttt taccggcgac tttgactcag
4681 tgatcgactg caacacatgt gtcacccaga cagtcgattt cagcttggat cccaccttca
4741 ccattgagac gacaacgctg ccccaagacg cggtgtcgcg tgcgcagcgg cgaggtagga
4801 ctggcagggg caggagtggc atctacaggt ttgtgactcc aggagaacgg ccctcaggca
4861 tgttcgactc ctcggtcctg tgtgagtgct atgacgcagg ctgcgcttgg tatgagctca
4921 cgcccgctga gacctcggtt aggttgcggg cttacctaaa tacaccaggg ttgcccgtct
4981 gccaggacca cctagagttc tgggagagcg tcttcacagg cctcacccac atagatgccc
5041 acttcttgtc ccagaccaaa caggcaggag acaacctccc ctacctggta gcataccaag
5101 ccacagtgtg cgccagggct caggctccac ctccatcgtg ggaccaaatg tggaagtgtc
5161 tcatacggct aaagcccaca ctgcatgggc caacgcccct gctgtacagg ctaggagccg
5221 ttcaaaatga ggtcactctc acacacccca taaccaaata catcatggca tgcatgtcgg
5281 ctgacctgga ggtcgtcact agcacctggg tgctagtagg cggagtcctt gcggctctgg
5341 ccgcgtactg cctgacgaca ggcagcgtgg tcattgtggg caggatcatc ttgtccggga
5401 ggccagctgt tattcccgac agggaagtcc tctaccagga gttcgatgag atggaagagt
5461 gtgcttcaca cctcccttac atcgagcaag gaatgcagct cgccgagcaa ttcaaacaga
5521 aggcgctcgg attgctgcaa acagccacca agcaagcgga ggctgctgct cccgtggtgg
5581 agtccaagtg gcgagccctt gaggtcttct gggcgaaaca catgtggaac ttcatcagcg
5641 ggatacagta cttggcaggc ctatccactc tgcctggaaa ccccgcgata gcatcattga
5701 tggcttttac agcctctatc accagcccgc tcaccaccca aaataccctc ctgtttaaca
5761 tcttgggggg atgggtggct gcccaactcg ctccccccag cgctgcttcg gctttcgtgg
5821 gcgccggcat tgccggtgcg gccgttggca gcataggtct cgggaaggta cttgtggaca
5881 ttctggcggg ctatggggcg ggggtggctg gcgcactcgt ggcctttaag gtcatgagcg
5941 gcgagatgcc ctccactgag gatctggtta atttactccc tgccatcctt tctcctggcg
6001 ccctggttgt cggggtcgtg tgcgcagcaa tactgcgtcg gcacgtgggc ccgggagagg
6061 gggctgtgca gtggatgaac cggctgatag cgttcgcttc gcggggtaac cacgtctccc
6121 ccacgcacta tgtgcccgag agcgacgccg cggcgcgtgt tactcagatc ctctccagcc
6181 ttaccatcac tcagttgctg aagaggcttc atcagtggat taatgaggac tgctccacgc
6241 cttgttccgg ctcgtggcta aaggatgttt gggactggat atgcacggtg ttgagtgact
6301 tcaagacttg gctccagtcc aagctcctgc cgcggttacc gggactccct ttcctgtcat
6361 gccaacgcgg gtacaaggga gtctggcggg gggatggcat catgcaaacc acctgcccat
6421 gtggagcaca gatcaccgga catgtcaaaa atggctccat gaggattgtt gggccaaaaa
6481 cctgcagcaa cacgtggcat ggaacattcc ccatcaacgc atacaccacg ggcccctgca
6541 cgccctcccc agcgccgaac tattccaggg cgctgtggcg ggtggctgct gaggagtacg
6601 tggaggttac gcgggtgggg gatttccact acgtgacggg catgaccact gacaacgtga
6661 aatgcccatg ccaggttcca gcccctgaat ttttcacgga ggtggatgga gtacggttgc
6721 acaggtatgc tccagtgtgc aaacctctcc tacgagagga ggtcgtattc caggtcgggc
6781 tcaaccagta cctggtcggg tcacagctcc catgtgagcc cgaaccggat gtggcagtgc
6841 tcacttccat gctcaccgac ccctctcata ttacagcaga gacggccaag cgtaggctgg
6901 ccagggggtc tcccccctcc ttggccagct cttcagctag ccagttgtct gcgccttctt
6961 tgaaggcgac atgtactacc catcatgact ccccggacgc tgacctcatc gaggccaacc
7021 tcctgtggcg gcaggagatg ggcgggaaca tcacccgtgt ggagtcagaa aataaggtgg
7081 taatcctgga ctctttcgat ccgattcggg cggtggagga tgagagggaa atatccgtcc
7141 cggcggagat cctgcgaaaa cccaggaagt tccccccagc gttgcccata tgggcacgcc
7201 cggattacaa ccctccactg ctagagtcct ggaaggaccc ggactacgtc cccccggtgg
7261 tacacgggtg ccctttgcca tctaccaagg cccccccaat accacctcca cggaggaaga
7321 ggacggttgt cctgacagag tccaccgtgt cttctgcctt ggcggagctc gctactaaga
7381 cctttggcag ctccgggtcg tcggccgttg acagcggcac ggcgactggc cctcccgatc
7441 aggcctccga cgacggcgac aaaggatccg acgttgagtc gtactcctcc atgccccccc
7501 tcgagggaga gccaggggac cccgacctca gcgacgggtc ttggtctacc gtgagcgggg
7561 aagctggtga ggacgtcgtc tgctgctcaa tgtcctatac atggacaggt gccttgatca
7621 cgccatgcgc tgcggaggag agcaagttgc ccatcaatcc gttgagcaac tctttgctgc
7681 gtcaccacag tatggtctac tccacaacat ctcgcagcgc aagtctgcgg cagaagaagg
7741 tcacctttga cagactgcaa gtcctggacg accactaccg ggacgtgctc aaggagatga
7801 aggcgaaggc gtccacagtt aaggctaggc ttctatctat agaggaggcc tgcaaactga
7861 cgcccccaca ttcggccaaa tccaaatttg gctacggggc gaaggacgtc cggagcctat
7921 ccagcagggc cgtcaaccac atccgctccg tgtgggagga cttgctggaa gacactgaaa
7981 caccaattga taccaccatc atggcaaaaa atgaggtttt ctgcgtccaa ccagagaaag
8041 gaggccgcaa gccagctcgc cttatcgtat tcccagacct gggggtacgt gtatgcgaga
8101 agatggccct ttacgacgtg gtctccaccc ttcctcaggc cgtgatgggc ccctcatacg
8161 gattccagta ctctcctggg cagcgggtcg agttcctggt gaatacctgg aaatcaaaga
8221 aatgccctat gggcttctca tatgacaccc gctgctttga ctcaacggtc actgagaatg
8281 acatccgtac tgaggaatca atttaccaat gttgtgactt ggcccccgaa gccaggcagg
8341 ccataaggtc gctcacagag cggctttatg tcgggggtcc cctgactaat tcgaaggggc
8401 agaactgcgg ttatcgccgg tgccgcgcaa gtggcgtgct gacgactagc tgcggcaaca
8461 ccctcacatg ttacttgaag gccactgcgg cctgtcgagc tgcaaagctc caggactgca
8521 cgatgctcgt gaacggagac gaccttgtcg ttatctgtga gagtgcggga acccaggagg
8581 atgcggcggc cctacgagcc ttcacggagg ctatgactag gtattccgcc ccccccgggg
8641 acccgcccca accagaatac gacttggagc tgataacgtc atgctcctcc aatgtgtcgg
8701 tcgcgcacga tgcatccggc aaaagggtgt actacctcac ccgtgacccc accacccccc
8761 tcgcacgggc tgcgtgggag acagttagac acactccagt caactcctgg ctaggcaata
8821 tcatcatgta tgcgcccacc ctatgggcga ggatgattct gatgactcat ttcttctcta
8881 tccttctagc tcaggagcaa cttgaaaaag ccctggattg tcagatctac ggggcctgtt
8941 actccattga gccacttgac ctacctcaga tcattgaacg actccatggt cttagcgcat
9001 tttcactcca cagttactct ccaggtgaga tcaatagggt ggcttcatgc ctcaggaaac
9061 ttggggtacc gcctttgcga gtctggagac atcgggccag aagtgtccgc gctaagctac
9121 tgtcccaggg ggggagggct gccacttgcg gcaagtacct cttcaactgg gcagtaaaga
9181 ccaagcttaa actcactcca atcccggctg cgtcccagct agacttgtcc ggctggttcg
9241 ttgctggtta caacggggga gacatatatc acagcctgtc tcgtgcccga ccccgttggt
9301 tcatgttgtg cctactccta ctttctgtag gggtaggcat ctacctgctc cccaaccggt
9361 gaacggggag ctaaccactc caggccaata ggccattccc tttttttttt ttc
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVHCT18 963 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction, (isolate HCT18), partial
cds.
ACCESSION X53131
KEYWORDS E1 protein; NS1 protein; envelope protein; hepatitis;
nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 963)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 963)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVHCT18; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>963
/note="putative envelope protein E1 and E1-NS1/E2 junction
(321 AA)"
/codon_start=1
BASE COUNT 175 a 297 c 275 g 216 t
ORIGIN
1 cgcaatttgg gtaaggtcat cgataccctt acgtgcggct tcgccgacct catggggtat
61 ataccgctcg tcggcgcccc tcttggaggc gctgccaggg ccctggcgca tggcgtccgg
121 gttctggaag acggcgtgaa ctatgcaaca gggaaccttc ctggttgctc tttctctatc
181 ttccttctgg ccctgctctc ttgcctgact gtgcccgctt cagcccacca agtgcgcaac
241 tccacggggc tttaccatgt caccaatgat tgccccaact cgagtattgt atacgaagcg
301 gccgacgcca tcctgcacac tccggggtgt gtcccttgcg ttcacgaggg caacgtctcg
361 aggtgttggg tggcggtgac ccccacggtg gccaccaggg atggcaaact ccccacaacg
421 cagcttcgac gtcacatcga tctgcttgtc gggagcgcca ccctctgctc ggccctctat
481 gtgggggact tgtgcgggtc tgtctttctt gtcggccaac tgtttacctt ctctcccagg
541 cgccactgga cgacgcaagg ttgcaattgc tctatctatc ccggccacat aacggggcac
601 cgcatggcat gggatatgat gatgaactgg tcccctacgg cggcgttggt gatggctcag
661 ctgctccgga tcccacaagc catcatggac atgatcgctg gtgctcactg gggagtcctg
721 gcgggcatag cgtatttctc catggtgggg aactgggcga aggtcctggt agtgctgctg
781 ctatttgccg gcgtcgacgc ggaaacctac accagcgggg gaaatgccgg ccacaccatg
841 actgggattg ttaggttctt cgcgccaggc cccaaacaga acgtccattt gatcaacacc
901 aacggcagtt ggcacatcaa tagcacggcc ctgaactgca atgatagcct caacaccggc
961 tgg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVTH 963 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction (isolate Th), partial cds.
ACCESSION X53134
KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 963)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 963)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVTH; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>963
/note="putative envelope protein E1 and E1-NS1/E2
junction"
/codon_start=1
BASE COUNT 169 a 301 c 279 g 214 t
ORIGIN
1 cgcaatttgg gtaaggtcat cgataccctt acgtgcggct tcgccgacct catggggtac
61 ataccgctcg tcggcgcccc tcttgggggc gctgccaggg ccctggcgca tggcgtccgg
121 gttctggaag acggcgtgaa ctatgcaaca gggaaccttc ctggttgctc tttctctctc
181 ttccttctgg ccctgctctc ttgtctgacc gtgcccgctt cagcctacca agtgcgcaac
241 tccacggggc tttaccatgt caccaacgat tgccccaact cgagtattgt gtacgaggcg
301 gccgatgcta tcctgcacgc tccggggtgt gtcccttgcg ttcgcgaggg taacgcctcg
361 aggtgttggg tggcgatgac ccccacggtg gccaccaggg acggcagact ccccacaacg
421 cagctgcgac gtcacatcga tctgcttgtc gggagcgcca ccctctgctc ggccctctac
481 gtgggggacc tgtgcgggtc catctttctt gtcggtcaac tgttcacctt ctctcccagg
541 cgccactgga cgacgcaagg ttgcaattgc tctatctatc ccggccatat aacgggtcac
601 cgcatggcat gggatatgat gatgaactgg tcccctacga cggcgttggt agtagctcag
661 ctgctccgga tcccacaagc catcttggac atgatcgctg gtgctcactg gggagtcctg
721 gcgggcatag cgtatttctc catggtgggg aactgggcaa aggtcctggt agtgctgctg
781 ctatttgccg gcgtcgacgc ggaaaccacc gtcaccgggg gaagtgccgc ccatggcgcg
841 cttggaattg ctagtctctt caaccagggc gccaggcaga acatccagct gatcaacacc
901 aacggcagtt ggcacatcaa tagcacggcc ttgaactgca atgatagcct caacaccggc
961 tgg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVHCT27 927 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction (isolate HCT27), partial
cds.
ACCESSION X53133
KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 927)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 927)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVHCT27; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>927
/note="putative envelope protein E1 and E1-NS1/E2
junction"
/codon_start=1
BASE COUNT 166 a 287 c 261 g 213 t
ORIGIN
1 ggcttcgccg acctcatggg gtacattccg ctcgtcggcg ctcctcttgg gggcgctgcc
61 agggccctgg cgcatggcgt ccgggttctg gaagacggcg tgaactatgc aacagggaac
121 cttcctggtt gctctttctc tatcttcctt ctggctctgc tctcttgcct gaccgtgccc
181 gcatcggcct accaagtacg caactcctcg ggcatttacc atgtcaccaa tgattgccct
241 aattcgagta ttgtgtacga gacggccgac accatcctac actctccggg gtgtgtccct
301 tgcgttcgcg agggtaacgc ctcgaaatgt tgggtgccgg tagcccccac agtggccacc
361 agggacggca acctccccgc aacgcagctt cgacgtcaca tcgatctgct tgtcgggagt
421 gccacccttt gctcggccct ctatgtgggg gacttgtgcg ggtctgtctt tcttgtcggt
481 caactgttca ctttctcccc caggcgccac tggacaacgc aagattgcaa ctgctctatc
541 taccccggcc atataacggg acaccgcatg gcatgggata tgatgatgaa ctggtcccct
601 acagcagcgc tggtaatggc tcagctgctc aggatcccgc aagccatctt ggacatgatc
661 gctggtgctc actggggagt cctagcgggc atagcgtatt tctccatggt ggggaactgg
721 gcgaaggtcc tggtggtgct gttgctgttt gccggcgtcg atgcgacaac ctataccacc
781 ggggggaatg ctgccaggac cacgcaggcg ctcaccagtt ttttcagccc aggcgccaag
841 caggatatcc agctgatcaa caccaacggc agttggcaca tcaatcgcac ggccttgaac
901 tgtaatgcga gcctcgacac tggctgg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVHCT23 926 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction, (isolate HCT23), partial
cds.
ACCESSION X53132
KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 926)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 926)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVHCT23; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>926
/note="putative envelope protein E1 and E1-NS1/E2 junction
(321 AA)"
/codon_start=1
BASE COUNT 164 a 290 c 264 g 208 t
ORIGIN
1 ggcttcgccg acctcatggg gtacataccg ctcgtcggcg cccctcttgg aggccgtgcc
61 agggccctgg cgcacggcgt ccgggttttg gaagacggcg tgaactatgc aacagggaac
121 cttcctggtt gctccttttc tatcttcctt ctggccctac tctcttgcct gaccgtgccc
181 gcttcagcct accaagtgcg caactctacg gggctttacc atgtcaccaa tgattgccct
241 aactcgagta ttgtgtacga ggcggccgat gccatcctgc acgctccggg gtgtgtccct
301 tgcgttcgcg aggataacgt ccgagatgtt gggtggcggt gacccccacg gtggccacca
361 aggacggcaa actccccaca acgcagcttc gacgtcacat cgatctgctt gtcgggagcg
421 ccaccctctg ctcggccctc tacgtggggg acctttgcgg gtccatcttt cttgtcggtc
481 aactgtttac cttctctccc aggcgccact ggacgacgca ggactgcaac tgttctatct
541 atcccggcca tataacgggt caccgcatgg catgggatat gatgatgaac tggtccccta
601 cggcggcatt ggtagtagct cagctgctcc ggatcccaca agccatcttg gacatgatcg
661 ctggtgctca ctggggagtc ctggcgggca tggcgtattt ctccatggtg gggaactggg
721 cgaaggtcct ggtagtgctg cttctatttg ccggcgtcga cgcggaaacc caccgtaccg
781 ggggaagtgc cgcccgcagc acggctggag ttgctagtct cttcacacca ggcgctaggc
841 agaacatcca gctgatcaac accaacggca gttggcacat caatagtacg gccttgaact
901 gcaatgacag ccttaccacc ggctgg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVEC1 576 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction (isolate EC1), partial cds.
ACCESSION X53135
KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 576)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 576)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVEC1; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>576
/note="putative envelope protein E1 and E1-NS1/E2
junction"
/codon_start=1
BASE COUNT 88 a 187 c 161 g 140 t
ORIGIN
1 cgcaatttgg gtaaggtcat cgataccctt acgtgcggct tcgccgacct catggggtac
61 ataccgctcg tcggcgcccc tcttggaggc gctgccaggg ccctggcgca tggcgtccgg
121 gttctggaag acggcgtgaa ctatgcaaca gggaaccttc ctggttgctc tttctctatc
181 ttccttctgg ccttgctctc ttgcttgact gtgcccgctt cggcctacca agtgcgcaac
241 tcctcggggc tttaccatgt caccaatgat tgccctaact cgagcattgt gtacgaggcg
301 gccgatgcca tcctgcacac tccggggtgt gtcccttgcg ttcacgaggg caacgtctcg
361 aggtgttggg tggcgatgac ccccacggtg gccaccaggg acggcaaact ccccacaacg
421 cagcttcgac gtcacatcga tctgcttgtc gggagcgcca ccctctgctc ggccctctac
481 gtgggggacc tgtgcgggtc tgtcttcctt gtcggtcaac tgtttacctt ctctcccagg
541 cgccactgga cgacgcaagg ttgcaattgc tctatc
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HPCVEC10 414 bp ss-mRNA VRL 22-MAY-1991
DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1)
protein and E1-NS1/E2 protein junction (isolate EC10), partial cds.
ACCESSION X53136
KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein.
SOURCE Hepatitis C virus RNA.
ORGANISM Hepatitis C virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae incertae sedis.
REFERENCE 1 (bases 1 to 414)
AUTHORS Weiner,A.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 414)
AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J.,
Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and
Han,J.H.
TITLE Variable and hypervariable domains found in the regions of HCV
corresponding to the flavivirius envelope and NS1 proteins and the
pestivirus envelope glycoproteins
JOURNAL Virology 180, 842-848 (1991)
STANDARD full automatic
COMMENT See X53131 to X53136 for the putative envelope sequence of other
HCV isolates.
From EMBL 26 entry HCVEC10; dated 27-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>414
/note="putative envelope protein E1 and E1-NS1/E2
junction"
/codon_start=1
BASE COUNT 93 a 115 c 117 g 89 t
ORIGIN
1 acgacgcaag gttgcaattg ctctatctat cccggccata taacaggtca ccgcatggca
61 tgggatatga tgatgaactg gtcccctacg acggcgttag tggtagctca gctgctccgg
121 atcccacaag ccatcttgga catgatcgct ggtgctcact ggggagtcct ggcgggcata
181 gcgtatttct ccatggtggg gaactgggcg aaggtcttgg cagtgctgct gctatttgcc
241 ggcgtcgacg cggaaaccca cgtcactggg gggatcgccg ccaaaactac ggctagcctt
301 actggtctct tcaatttagg tgccaagcag aacatccagc tgatcaacac caacggcagt
361 tggcacatca acaggacggc cttgaactgc aatgatagcc tcaacaccgg ctgg
//