GenBank-Updates@genbank.bio.net (05/23/91)
LOCUS BLYCPHVPSB 5221 bp ds-DNA ORG 23-MAY-1991
DEFINITION Barley chloroplast psbB, psbH, petB and petD.
ACCESSION X14107
KEYWORDS chlorophyll a-binding protein; petB gene; petD gene;
phosphoprotein; photosystem II; psbB gene; psbH gene.
SOURCE barley (Chloroplast Hordeum vulgare).
ORGANISM Chloroplast Hordeum vulgare
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (bases 1 to 5221)
AUTHORS Reverdatto,S.V.
JOURNAL Unpublished (1989) see COMMENT for author address
STANDARD simple automatic
REFERENCE 2 (bases 1 to 5221)
AUTHORS Andreeva,A.V., Buryakova,A.A., Reverdatto,S.V., Chakhmakhcheva,O.G.
and Efimov,V.A.
TITLE Nucleotide sequence ofthe 5.2 kbp barley chloroplast DNA fragment
containing psbB-psbH-petB-petD gene cluster
JOURNAL Nucleic Acids Res. 17, 2859-2860 (1989)
STANDARD simple automatic
COMMENT
[1] enum. 1 to 5221.
See also acc# x07522 (HVD2PSBD) *source: strain=cv. Sabarlis;
EMBL features not translated to GenBank features:
key from to description
PRM 2417 2422 pot. -35 region (petB gene)
PRM 2441 2446 pot. -10 region (petB gene)
RBS 2607 2609 pot. ribosome binding site (petB)
MSG ? 2617 pot. Exon 1 (petB gene)
IVS 2618 3370 Intron I (petB gene)
PRM 2975 2980 pot. alt. -35 region (petB gene)
PRM 2998 3003 pot. alt. -10 region (petB gene)
RBS 3311 3313 pot. alt. ribosome binding site
MSG 3371 ? Exon 2 (petB gene)
RBS 4189 4192 pot. ribosome binding site (petD)
MSG ? 4207 pot. Exon 1 (petD gene)
IVS 4208 4955 Intron I (petD gene)
RBS 4897 4899 pot. alt. ribosome binding site
MSG 4956 >5221 pot. Exon 2 (petD gene)
[1] Author address Reverdatto S.V., Shemyakin Institute of
Biorganic Chemistry, USSR Academy of Sciences, U1 Miklukho Maklaya,
16/10 , 117871 GSP Moscow, V-437 USSR.
Submitted (18-JAN-1989) on tape to the EMBL data library
FEATURES Location/Qualifiers
CDS join(2612..2617,3371..4012)
/note="pot. petB gene product (AA 1 - 2)"
/codon_start=2612
CDS join(4199..4207,4956..>5221)
/note="pot. petD gene product (AA 1 - 3)"
/codon_start=4199
misc_feature complement(38..179)
CDS 180..1706
/note="chlorophyll a-binding protein (psbB gene)"
/codon_start=180
CDS 2261..2482
/note="10 kD phosphoprotein (psbH gene; AA 1 - 73)"
/codon_start=2261
exon 2612..2617
/note="pot. petB gene product (AA 1 - 2)"
CDS 3314..4012
/note="pot. alt. petB gene product (AA 1 -232)"
/codon_start=3314
exon 3371..4012
/note="pot. petB gene product (AA 3 - 215)"
exon 4199..4207
/note="pot. petD gene product (AA 1 - 3)"
CDS 4905..>5221
/note="pot. alt. petD gene product"
/codon_start=4905
exon 4956..>5221
/note="pot. petD gene product (AA 4 - 92)"
BASE COUNT 1475 a 916 c 1128 g 1702 t
ORIGIN
1 ctgcagttgc catgttttac ggcagtgaga gcagagatag cgctgatgtc cggcggtgct
61 tttgccgtta cgcaccaccc cgtcagtagc tgaacaggag ggacagctga tagaaacaga
121 agccactgga gcacctcaaa aacaccatca tacactaaat cagtaagttg gcagcatcaa
181 tgggtttgcc ttggtatcgt gttcatactg tcgtattgaa tgatccgggt cgattgcttt
241 cggtgcatat aatgcacaca gctctagttt ctggttgggc tggctcaatg gctttatacg
301 aattagcagt ttttgatccc tctgatcctg ttctggatcc aatgtggaga caaggtatgt
361 tcgtaattcc cttcatgact cgtttaggaa taacggattc gtggggtggt tggagtattt
421 caggaggaac tgtaacaaat ccgggtattt ggagttatga aggtgtggca gctacgcata
481 ttgtgttttc tggcttgtgt ttcttggcag cgatctggca ttgggtatat tgggacctag
541 aaatattctc tgatgagcgg acgggaaaac cctctttgga tttgcccaag atctttggaa
601 ttcatttatt tcttgcaggg gtggcttgct ttggctttgg ggcatttcat gtaacgggtt
661 tgtatggtcc tgggatatgg gtatccgatc cttatggact aactggaaaa gtacaagctg
721 taaatccagc gtggggtgca gaaggttttg atccttttgt tccgggggga atagcttctc
781 atcatattgc tgcgggtaca ttgggtatat tagcgggctt attccatctt agtgtccgtc
841 cgcctcaacg tctatataaa ggattacgta tgggcaatat tgaaactgta ctttccagta
901 gtatcgctgc tgtttttttt gcagctttcg tagttgctgg aactatgtgg tatgggtcag
961 caacgacccc aatcgaatta tttgggccta ctcgttatca gtgggatcag ggatactttc
1021 agcaagaaat atatcgaaga gttagcaatg gtttagccga aaatcttagt ttatcagaag
1081 cttggtctaa aattcccgaa aaattagcct tttatgatta tattggtaat aatccggcaa
1141 aagggggatt attcagagcg ggctcaatgg acaatgggga tggaatagct gttggatggt
1201 taggacatcc cgtctttaga gataaagaag gacgtgagct ttttgtacgc cgtatgccta
1261 ctttttttga aacatttccg gttgttttgg tagatgagga gggaattgtt agagcggacg
1321 ttccttttag aagagcagaa tccaaatata gtgttgaaca agtaggcgta acggtggagt
1381 tctatggtgg cgaacttaat ggagtaaatt attctgatcc tgctactgta aaaaaatatg
1441 cgaggcgttc tcaattaggg gaaatttttg aattagaccg ggctactttg aaatccgatg
1501 gtgtttttcg cagcagtcca aggggttggt tcacttttgg tcatgctacc tttgctttgc
1561 tcttcttttt cggacacatt tggcatggcg ctagaacatt gttccgagat gtttttgctg
1621 gtattgatcc agatttggat gctcaagtgg aatttggaac attccaaaaa gtgggagatc
1681 caactacaaa gaaacaggca gtctgataca cattgttatg gtatctttca cctctctttt
1741 ttgatttgac atctcccatc ctttctttga ctctttttct ttctttatat gggaaattct
1801 cccaaatgac aaatgaatag gtgtggaagt tataattgta aataaaccac gatcgaatct
1861 atggaagcat tggtttatac gttcctttta gtttcgactt tagggataat ttttttcgct
1921 atcttcttcc gagaaccacc taaggttcca ccaactccaa ctaaaagaat aaaataattt
1981 catttaagta agaagtctcc cagatagggg gacttcttac ttaaattagt ctccgtgttc
2041 ttcgaatgga tctcttaatt gttgagaggg ttgcccaaac gcggtatata aggcataccc
2101 agtaaagctt acaagtaaac cagatatgga gatggcgact aaagttgctg tttccatttt
2161 tatagaattt caagattaca atggatctac gaaaagatcg tgtatttaca actacaacgg
2221 aatagtatac aaagtcaaca ccaatgatta aatataattt atggctacac aaaccgttga
2281 agatagttct aaacctaggc caaaacgaac tggtgcaggt agtttactga aacccttgaa
2341 ttcggaatat gggaaagtcg ccccgggttg ggggactact ccttttatgg gggtcgcaat
2401 ggctttattc gctatattcc tatctatcat tttagaaatt tataattctt ccattttact
2461 ggatggaatt ttaaccaatt aggtttctac taactaaaac taggaagtca gagtttttcc
2521 atccaaaaaa gcctttctag tttaagctct acatttctag atattatggt agttcgaccg
2581 cggaattttt ttgtttcggt atctctggaa tatgagtgtg tgacttgtta gaattgatcc
2641 tattgataat acatagaaag ggcctgttat ctctatcaag atgattctaa ttcgtcagat
2701 attatttatt ctagtatctg gaacacgaaa tagatagagt ggatcaaaaa aaatggaact
2761 atgattcata ctcactatta agacctcgca accagactga aaaattcaag tagttcttaa
2821 ataaaaataa aaaagaaatt ttcttcctta caattttgtt tgcccaaaag acaacttttt
2881 ttctatcgat tttgtcgagt cattacactg attcaatttc aataaatgat tatcaagcgg
2941 ttcttattcg aagaaccctt gccttttgtt tagcttgaga ctaaatcatc gtggctctag
3001 tatgaatcta aggttttaat tgaactgatt cataggatca caacaagata atttctatat
3061 tacgcataaa aaaaaatcca aaatagggaa gagaaaagtc aagaagcctc taatgaccaa
3121 cataagggaa aggaagaaag aaagacgcgc caacttgaga ttttttggca ttatcatcac
3181 aaagaagata ttccggattt tttttatttg ctatcttcaa ggcaaatcga cccgattcag
3241 tggctgatga agttttgaac cttttttcta atattcgttg aaaatttgtg tgtttctgct
3301 tgagccgtac gagatgaaat tttcatatac ggctcttaga ggggggcgtg ggttagttac
3361 ctatctcaat aaagtatatg attggtttga ggaacgtctt gagattcagg caattgcgga
3421 tgatataact agtaaatatg ttcctcccca tgtcaacata ttttattgtt tagggggaat
3481 tacacttact tgttttctag tacaagtcgc taccggtttt gctatgactt tttactaccg
3541 accaaccgtt acagaggctt tttcctcggt tcaatacata atgaccgagg ccaactttgg
3601 ttggttaatc cgatcagttc atcgatggtc agcaagtatg atggttttaa tgatgatcct
3661 gcatgtattt cgtgtgtatc tcacaggggg atttaaaaaa ccccgtgaat taacttgggt
3721 gacaggtgtg gttttggctg ttttgactgc atcatttggt gtaactggtt attctttgcc
3781 ttgggatcaa attggctatt gggcagtcaa aattgtgaca ggtgtacctg acgccattcc
3841 ggtaatagga tcgcctttag tggagttatt acgcggaagt gctagtgtgg gccaatccac
3901 tttgactcgt ttttatagtt tacatacctt tgtactgcct ctgcttactg ccgtatttat
3961 gttaatgcac tttccaatga tacgtaagca aggtatttcg ggtcctttat agggaaggca
4021 tatcatagag aattctaatt ctcatatatc atatcgggta ggttgtggta tttcattgct
4081 acaagcatgg gttattgtaa aataacacat gtcatttgga tacttctctt caactccgaa
4141 gtatttttat acgatacaaa tagttgaagt taattttacg aaagaaaaaa ggcggattat
4201 gggagtgtgt gacttgaatt attgatttgg ccatgcagat aaagaattgg atctgccaca
4261 ttagaattca caaccaaagg tgtctccgca tccaatcaac atgtaagtcc cctacctagg
4321 aaggataggc tggttcactt gaggagaata ttttctatga tcataccgca accatgtcat
4381 ccatgaacag gctccgtaag atcccataga gtggaaatgg aatcagtcat gtgacatgat
4441 ccaattctct atttattaca cttacttttt attatagtat ggaaatgcat tcattttctt
4501 tgcatcgatt gtgatccgca atactatcgg agtaaaagaa gggatctaag gaagaatgta
4561 ggctaaactt tttgattttt tattagtaac aagtaaatat tttgtttgga ggtaagaaac
4621 ttgcgatatt gaggggataa ataccaacta atcaagagac atgagacaat ccacaaagca
4681 attgatcatg atcaaatttg taagcccact tggatattga gcatttaccc ataagaatag
4741 gattattttc aatgagtagt ggtaggtgca actttggaaa agagaatctg ataaagcttt
4801 ttttgtctag agtcattgag tcattatata ccttaattct attaaggatc ttccgcggtc
4861 ttatttcttt cactcttgct cgagccggat gatgataaat tctcatgtcc ggttcctttg
4921 ggggatggat cctaaagagt tcacctatcc caataacaaa gaaaccagac ttaaatgatc
4981 ctgtattaag agctaaatta gctaaaggga tgggacataa ttattacggg gaacccgcat
5041 ggcccaacga tcttttatat atttttccag tagtaattct aggtactatt gcatgtaatg
5101 taggtttagc ggttctcgag ccatcaatga ttggtgaacc ggcagacccg tttgcaactc
5161 ctttggaaat attacccgag tggtacttct ttcccgtgtt tcaaatactc cgtacggtac
5221 c
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