GenBank-Updates@genbank.bio.net (03/21/91)
LOCUS RABHBZ1 3617 bp ds-DNA MAM 21-MAR-1991 DEFINITION Rabbit zeta-1 globin processed pseudogene, complete cds. ACCESSION J03883 M36140 KEYWORDS globin; hemoglobin; pseudogene. SEGMENT 1 of 3 SOURCE Rabbit DNA, clones lambda-R-zeta-G-pi-[14,28]. ORGANISM Oryctolagus cuniculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Lagomorpha; Leporidae. REFERENCE 1 (bases 1 to 3617) AUTHORS Cheng,J.-F., Krane,D.E. and Hardison,R.C. TITLE Nucleotide sequence and expression of rabbit globin genes zeta-1, zeta-2, and zeta-3: Pseudogenes generated by block duplications are transcriptionally competent JOURNAL J. Biol. Chem. 263, 9981-9993 (1988) STANDARD full staff_entry REFERENCE 2 (sites) AUTHORS Krane,D.E., Clark,A.G., Cheng,J.-F. and Hardison,R.C. TITLE Subfamily relationships and clustering of rabbit C repeats JOURNAL Mol. Biol. Evol. 8, 1-30 (1991) STANDARD full staff_review FEATURES Location/Qualifiers CDS join(5602..2430,2711..2913,3058..3186) /note="pseudo-zeta-1 globin" /codon_start=5602 repeat_unit 332..975 /rpt_type=C repeat number 17 repeat_unit 349..700 /rpt_type=C repeat number 16 repeat_unit 995..1997 /rpt_type=C repeat number 18 repeat_unit 1305..1962 /rpt_type=C repeat number 20 repeat_unit 1311..1660 /rpt_type=C repeat number 19 prim_transcript 2274..3266 /note="HBZ1 mRNA and introns (alt.)" prim_transcript 2277..3266 /note="HBZ1 mRNA and introns (alt.)" intron 2431..2710 /note="HBZ1 intron A" exon 2711..2913 /pseudo /note="pseudo-zeta-1 globin, exon 2" intron 2914..3057 /note="HBZ1 intron B" exon 3058..3186 /pseudo /note="pseudo-zeta-1 globin, exon 3" exon 5602..2430 /pseudo /note="pseudo-zeta-1 globin, exon 1" BASE COUNT 778 a 1095 c 1035 g 709 t ORIGIN 475 bp upstream of NcoI site. 1 cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc 61 aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt 121 cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc 181 ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg 241 cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact 301 ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca 361 ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat 421 gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa 481 tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt 541 ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat 601 ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag 661 aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt 721 gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga 781 gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg 841 acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag 901 ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc 961 tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg 1021 cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct 1081 gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc 1141 ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa 1201 gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt 1261 cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag 1321 gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag 1381 agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt 1441 tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac 1501 ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc 1561 agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc 1621 acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt 1681 catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc 1741 tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag 1801 tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct 1861 ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct 1921 ctcttggagt ctttcactaa tgataaataa tttcagcaaa cacttgtaca ctattcatta 1981 gaaacaatag aacagagcaa atgagcacac acaaggaggc gtccatgctt gcagaggcac 2041 agggtgagcc acagggacac acgacggcac gcccgtcagg acagcccgga ggacacggtg 2101 gcacattgca ggccgtggcc gtcccttcat gccgacaggc gggaacaggg cagcatccta 2161 ggatgtcaga gacacatggc agccctgctg tgcactcctc ttcccctctt cccagaggag 2221 ccagggcctg gctggactct gctccccgta tataagggag cctgcggctg agcaccacca 2281 cacccagtgc tcagcacctc cagcccctgt gcagcagccc agccccggcc tcaccatgtc 2341 tctgaccaag agcaagagga ccatcatcat gtccctctgg gacaaggtct tctcccagtc 2401 tgaggccatc ggcactgagg ccctggagag gtaggtgccc catgggtcgc agcctgagtg 2461 tccagaccag ggacggggag aggtcaggag gagggacggt gacgcagtgg ccagtcttcc 2521 tgctcacagc ctccaccagc agctggggac tgagtgacag gaacagggga gcaggggctg 2581 ggctgggccg cagtccctgt ctgaaatgcc cgtgtgcgct ccctgtggac tgcacgctgg 2641 gttttgcctt gcaaacactg cgtgaaagtg ggcttctcct gactgctggg tgtggggcgc 2701 ccgcccccag gctcttcctc agcttcccgc agaccaagac ctacttccag cacttcaact 2761 tcgccaccgc tcggcacagg tgcgcactcc gggtgccaac gtggtgactg cactggacga 2821 cgcagtcaag aacatggaca acttggatgg cgggctgtcc atgtgagcag actgcacgcc 2881 aatgtgctgc aggtggaccc ggtcaacttc agggtgagtg cagagcgtgg tctgctgggt 2941 tggacatggc cttgagggta gggctgggcg caaggattgg gctcggtgtg ggtggggtat 3001 tcagagcggc cctgggtggt tgccgccagc agatcatgac caccccctgc cacgcagctc 3061 ctgtcccact gcctgcaggt caccctggcc aggtacctgc ctcaggactt caccgccgag 3121 accaaaactg gctgggagaa gttcctggag gaagtgacct acgtcctgac caataggtac 3181 tgcttggagc gctccacacc cctggacagc aggcaacccc tctgtggtcc tgaactgccc 3241 gggccctccc tccactcccc aataaagtca tgccaatgga tgagctgtgt cctgtattcc 3301 ttgtgctggg gggaagtagc agaacctgtt ctcagagggc tgggtcggtg tctgcagtga 3361 gggccttcaa tgccagcccg gcatcccgac tcctgcgacc ctaggggctg cactggggat 3421 ccagccgctc cctctgtccc ggggagcatc cccaggttcc ctcggagagt tcaagcggca 3481 caggcactct gagtcccgaa ggctgaaggc acaggctggt ccctggtctg ataaggttgt 3541 gcagggctgc agcgccatgc atgtgtgata agcaccccac acacacccgc actcaagtcc 3601 cgctccaaat ctcccgc //
GenBank-Updates@genbank.bio.net (05/23/91)
LOCUS RABHBZ1 3617 bp ds-DNA MAM 23-MAY-1991 DEFINITION Rabbit zeta-1 globin processed pseudogene, complete cds. ACCESSION J03883 M36140 KEYWORDS globin; hemoglobin; pseudogene. SEGMENT 1 of 3 SOURCE Rabbit DNA, clones lambda-R-zeta-G-pi-[14,28]. ORGANISM Oryctolagus cuniculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Lagomorpha; Leporidae. REFERENCE 1 (bases 1 to 3617) AUTHORS Cheng,J.-F., Krane,D.E. and Hardison,R.C. TITLE Nucleotide sequence and expression of rabbit globin genes zeta-1, zeta-2, and zeta-3: Pseudogenes generated by block duplications are transcriptionally competent JOURNAL J. Biol. Chem. 263, 9981-9993 (1988) STANDARD full staff_entry REFERENCE 2 (sites) AUTHORS Krane,D.E., Clark,A.G., Cheng,J.-F. and Hardison,R.C. TITLE Subfamily relationships and clustering of rabbit C repeats JOURNAL Mol. Biol. Evol. 8, 1-30 (1991) STANDARD full staff_review FEATURES Location/Qualifiers CDS join(2336..2430,2711..2913,3058..3186) /note="pseudo-zeta-1 globin" /codon_start=2336 repeat_unit 332..975 /rpt_type=C repeat number 17 repeat_unit 349..700 /rpt_type=C repeat number 16 repeat_unit 995..1997 /rpt_type=C repeat number 18 repeat_unit 1305..1962 /rpt_type=C repeat number 20 repeat_unit 1311..1660 /rpt_type=C repeat number 19 prim_transcript 2274..3266 /note="HBZ1 mRNA and introns (alt.)" prim_transcript 2277..3266 /note="HBZ1 mRNA and introns (alt.)" exon 2336..2430 /pseudo /note="pseudo-zeta-1 globin, exon 1" intron 2431..2710 /note="HBZ1 intron A" exon 2711..2913 /pseudo /note="pseudo-zeta-1 globin, exon 2" intron 2914..3057 /note="HBZ1 intron B" exon 3058..3186 /pseudo /note="pseudo-zeta-1 globin, exon 3" BASE COUNT 778 a 1095 c 1035 g 709 t ORIGIN 475 bp upstream of NcoI site. 1 cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc 61 aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt 121 cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc 181 ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg 241 cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact 301 ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca 361 ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat 421 gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa 481 tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt 541 ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat 601 ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag 661 aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt 721 gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga 781 gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg 841 acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag 901 ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc 961 tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg 1021 cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct 1081 gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc 1141 ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa 1201 gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt 1261 cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag 1321 gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag 1381 agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt 1441 tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac 1501 ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc 1561 agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc 1621 acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt 1681 catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc 1741 tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag 1801 tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct 1861 ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct 1921 ctcttggagt ctttcactaa tgataaataa tttcagcaaa cacttgtaca ctattcatta 1981 gaaacaatag aacagagcaa atgagcacac acaaggaggc gtccatgctt gcagaggcac 2041 agggtgagcc acagggacac acgacggcac gcccgtcagg acagcccgga ggacacggtg 2101 gcacattgca ggccgtggcc gtcccttcat gccgacaggc gggaacaggg cagcatccta 2161 ggatgtcaga gacacatggc agccctgctg tgcactcctc ttcccctctt cccagaggag 2221 ccagggcctg gctggactct gctccccgta tataagggag cctgcggctg agcaccacca 2281 cacccagtgc tcagcacctc cagcccctgt gcagcagccc agccccggcc tcaccatgtc 2341 tctgaccaag agcaagagga ccatcatcat gtccctctgg gacaaggtct tctcccagtc 2401 tgaggccatc ggcactgagg ccctggagag gtaggtgccc catgggtcgc agcctgagtg 2461 tccagaccag ggacggggag aggtcaggag gagggacggt gacgcagtgg ccagtcttcc 2521 tgctcacagc ctccaccagc agctggggac tgagtgacag gaacagggga gcaggggctg 2581 ggctgggccg cagtccctgt ctgaaatgcc cgtgtgcgct ccctgtggac tgcacgctgg 2641 gttttgcctt gcaaacactg cgtgaaagtg ggcttctcct gactgctggg tgtggggcgc 2701 ccgcccccag gctcttcctc agcttcccgc agaccaagac ctacttccag cacttcaact 2761 tcgccaccgc tcggcacagg tgcgcactcc gggtgccaac gtggtgactg cactggacga 2821 cgcagtcaag aacatggaca acttggatgg cgggctgtcc atgtgagcag actgcacgcc 2881 aatgtgctgc aggtggaccc ggtcaacttc agggtgagtg cagagcgtgg tctgctgggt 2941 tggacatggc cttgagggta gggctgggcg caaggattgg gctcggtgtg ggtggggtat 3001 tcagagcggc cctgggtggt tgccgccagc agatcatgac caccccctgc cacgcagctc 3061 ctgtcccact gcctgcaggt caccctggcc aggtacctgc ctcaggactt caccgccgag 3121 accaaaactg gctgggagaa gttcctggag gaagtgacct acgtcctgac caataggtac 3181 tgcttggagc gctccacacc cctggacagc aggcaacccc tctgtggtcc tgaactgccc 3241 gggccctccc tccactcccc aataaagtca tgccaatgga tgagctgtgt cctgtattcc 3301 ttgtgctggg gggaagtagc agaacctgtt ctcagagggc tgggtcggtg tctgcagtga 3361 gggccttcaa tgccagcccg gcatcccgac tcctgcgacc ctaggggctg cactggggat 3421 ccagccgctc cctctgtccc ggggagcatc cccaggttcc ctcggagagt tcaagcggca 3481 caggcactct gagtcccgaa ggctgaaggc acaggctggt ccctggtctg ataaggttgt 3541 gcagggctgc agcgccatgc atgtgtgata agcaccccac acacacccgc actcaagtcc 3601 cgctccaaat ctcccgc //