GenBank-Updates@genbank.bio.net (03/21/91)
LOCUS RABHBZ1 3617 bp ds-DNA MAM 21-MAR-1991
DEFINITION Rabbit zeta-1 globin processed pseudogene, complete cds.
ACCESSION J03883 M36140
KEYWORDS globin; hemoglobin; pseudogene.
SEGMENT 1 of 3
SOURCE Rabbit DNA, clones lambda-R-zeta-G-pi-[14,28].
ORGANISM Oryctolagus cuniculus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Lagomorpha; Leporidae.
REFERENCE 1 (bases 1 to 3617)
AUTHORS Cheng,J.-F., Krane,D.E. and Hardison,R.C.
TITLE Nucleotide sequence and expression of rabbit globin genes zeta-1,
zeta-2, and zeta-3: Pseudogenes generated by block duplications are
transcriptionally competent
JOURNAL J. Biol. Chem. 263, 9981-9993 (1988)
STANDARD full staff_entry
REFERENCE 2 (sites)
AUTHORS Krane,D.E., Clark,A.G., Cheng,J.-F. and Hardison,R.C.
TITLE Subfamily relationships and clustering of rabbit C repeats
JOURNAL Mol. Biol. Evol. 8, 1-30 (1991)
STANDARD full staff_review
FEATURES Location/Qualifiers
CDS join(5602..2430,2711..2913,3058..3186)
/note="pseudo-zeta-1 globin"
/codon_start=5602
repeat_unit 332..975
/rpt_type=C repeat number 17
repeat_unit 349..700
/rpt_type=C repeat number 16
repeat_unit 995..1997
/rpt_type=C repeat number 18
repeat_unit 1305..1962
/rpt_type=C repeat number 20
repeat_unit 1311..1660
/rpt_type=C repeat number 19
prim_transcript 2274..3266
/note="HBZ1 mRNA and introns (alt.)"
prim_transcript 2277..3266
/note="HBZ1 mRNA and introns (alt.)"
intron 2431..2710
/note="HBZ1 intron A"
exon 2711..2913
/pseudo
/note="pseudo-zeta-1 globin, exon 2"
intron 2914..3057
/note="HBZ1 intron B"
exon 3058..3186
/pseudo
/note="pseudo-zeta-1 globin, exon 3"
exon 5602..2430
/pseudo
/note="pseudo-zeta-1 globin, exon 1"
BASE COUNT 778 a 1095 c 1035 g 709 t
ORIGIN 475 bp upstream of NcoI site.
1 cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc
61 aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt
121 cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc
181 ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg
241 cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact
301 ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca
361 ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat
421 gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa
481 tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt
541 ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat
601 ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag
661 aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt
721 gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga
781 gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg
841 acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag
901 ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc
961 tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg
1021 cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct
1081 gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc
1141 ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa
1201 gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt
1261 cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag
1321 gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag
1381 agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt
1441 tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac
1501 ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc
1561 agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc
1621 acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt
1681 catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc
1741 tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag
1801 tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct
1861 ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct
1921 ctcttggagt ctttcactaa tgataaataa tttcagcaaa cacttgtaca ctattcatta
1981 gaaacaatag aacagagcaa atgagcacac acaaggaggc gtccatgctt gcagaggcac
2041 agggtgagcc acagggacac acgacggcac gcccgtcagg acagcccgga ggacacggtg
2101 gcacattgca ggccgtggcc gtcccttcat gccgacaggc gggaacaggg cagcatccta
2161 ggatgtcaga gacacatggc agccctgctg tgcactcctc ttcccctctt cccagaggag
2221 ccagggcctg gctggactct gctccccgta tataagggag cctgcggctg agcaccacca
2281 cacccagtgc tcagcacctc cagcccctgt gcagcagccc agccccggcc tcaccatgtc
2341 tctgaccaag agcaagagga ccatcatcat gtccctctgg gacaaggtct tctcccagtc
2401 tgaggccatc ggcactgagg ccctggagag gtaggtgccc catgggtcgc agcctgagtg
2461 tccagaccag ggacggggag aggtcaggag gagggacggt gacgcagtgg ccagtcttcc
2521 tgctcacagc ctccaccagc agctggggac tgagtgacag gaacagggga gcaggggctg
2581 ggctgggccg cagtccctgt ctgaaatgcc cgtgtgcgct ccctgtggac tgcacgctgg
2641 gttttgcctt gcaaacactg cgtgaaagtg ggcttctcct gactgctggg tgtggggcgc
2701 ccgcccccag gctcttcctc agcttcccgc agaccaagac ctacttccag cacttcaact
2761 tcgccaccgc tcggcacagg tgcgcactcc gggtgccaac gtggtgactg cactggacga
2821 cgcagtcaag aacatggaca acttggatgg cgggctgtcc atgtgagcag actgcacgcc
2881 aatgtgctgc aggtggaccc ggtcaacttc agggtgagtg cagagcgtgg tctgctgggt
2941 tggacatggc cttgagggta gggctgggcg caaggattgg gctcggtgtg ggtggggtat
3001 tcagagcggc cctgggtggt tgccgccagc agatcatgac caccccctgc cacgcagctc
3061 ctgtcccact gcctgcaggt caccctggcc aggtacctgc ctcaggactt caccgccgag
3121 accaaaactg gctgggagaa gttcctggag gaagtgacct acgtcctgac caataggtac
3181 tgcttggagc gctccacacc cctggacagc aggcaacccc tctgtggtcc tgaactgccc
3241 gggccctccc tccactcccc aataaagtca tgccaatgga tgagctgtgt cctgtattcc
3301 ttgtgctggg gggaagtagc agaacctgtt ctcagagggc tgggtcggtg tctgcagtga
3361 gggccttcaa tgccagcccg gcatcccgac tcctgcgacc ctaggggctg cactggggat
3421 ccagccgctc cctctgtccc ggggagcatc cccaggttcc ctcggagagt tcaagcggca
3481 caggcactct gagtcccgaa ggctgaaggc acaggctggt ccctggtctg ataaggttgt
3541 gcagggctgc agcgccatgc atgtgtgata agcaccccac acacacccgc actcaagtcc
3601 cgctccaaat ctcccgc
//GenBank-Updates@genbank.bio.net (05/23/91)
LOCUS RABHBZ1 3617 bp ds-DNA MAM 23-MAY-1991
DEFINITION Rabbit zeta-1 globin processed pseudogene, complete cds.
ACCESSION J03883 M36140
KEYWORDS globin; hemoglobin; pseudogene.
SEGMENT 1 of 3
SOURCE Rabbit DNA, clones lambda-R-zeta-G-pi-[14,28].
ORGANISM Oryctolagus cuniculus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Lagomorpha; Leporidae.
REFERENCE 1 (bases 1 to 3617)
AUTHORS Cheng,J.-F., Krane,D.E. and Hardison,R.C.
TITLE Nucleotide sequence and expression of rabbit globin genes zeta-1,
zeta-2, and zeta-3: Pseudogenes generated by block duplications are
transcriptionally competent
JOURNAL J. Biol. Chem. 263, 9981-9993 (1988)
STANDARD full staff_entry
REFERENCE 2 (sites)
AUTHORS Krane,D.E., Clark,A.G., Cheng,J.-F. and Hardison,R.C.
TITLE Subfamily relationships and clustering of rabbit C repeats
JOURNAL Mol. Biol. Evol. 8, 1-30 (1991)
STANDARD full staff_review
FEATURES Location/Qualifiers
CDS join(2336..2430,2711..2913,3058..3186)
/note="pseudo-zeta-1 globin"
/codon_start=2336
repeat_unit 332..975
/rpt_type=C repeat number 17
repeat_unit 349..700
/rpt_type=C repeat number 16
repeat_unit 995..1997
/rpt_type=C repeat number 18
repeat_unit 1305..1962
/rpt_type=C repeat number 20
repeat_unit 1311..1660
/rpt_type=C repeat number 19
prim_transcript 2274..3266
/note="HBZ1 mRNA and introns (alt.)"
prim_transcript 2277..3266
/note="HBZ1 mRNA and introns (alt.)"
exon 2336..2430
/pseudo
/note="pseudo-zeta-1 globin, exon 1"
intron 2431..2710
/note="HBZ1 intron A"
exon 2711..2913
/pseudo
/note="pseudo-zeta-1 globin, exon 2"
intron 2914..3057
/note="HBZ1 intron B"
exon 3058..3186
/pseudo
/note="pseudo-zeta-1 globin, exon 3"
BASE COUNT 778 a 1095 c 1035 g 709 t
ORIGIN 475 bp upstream of NcoI site.
1 cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc
61 aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt
121 cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc
181 ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg
241 cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact
301 ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca
361 ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat
421 gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa
481 tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt
541 ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat
601 ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag
661 aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt
721 gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga
781 gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg
841 acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag
901 ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc
961 tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg
1021 cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct
1081 gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc
1141 ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa
1201 gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt
1261 cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag
1321 gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag
1381 agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt
1441 tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac
1501 ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc
1561 agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc
1621 acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt
1681 catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc
1741 tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag
1801 tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct
1861 ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct
1921 ctcttggagt ctttcactaa tgataaataa tttcagcaaa cacttgtaca ctattcatta
1981 gaaacaatag aacagagcaa atgagcacac acaaggaggc gtccatgctt gcagaggcac
2041 agggtgagcc acagggacac acgacggcac gcccgtcagg acagcccgga ggacacggtg
2101 gcacattgca ggccgtggcc gtcccttcat gccgacaggc gggaacaggg cagcatccta
2161 ggatgtcaga gacacatggc agccctgctg tgcactcctc ttcccctctt cccagaggag
2221 ccagggcctg gctggactct gctccccgta tataagggag cctgcggctg agcaccacca
2281 cacccagtgc tcagcacctc cagcccctgt gcagcagccc agccccggcc tcaccatgtc
2341 tctgaccaag agcaagagga ccatcatcat gtccctctgg gacaaggtct tctcccagtc
2401 tgaggccatc ggcactgagg ccctggagag gtaggtgccc catgggtcgc agcctgagtg
2461 tccagaccag ggacggggag aggtcaggag gagggacggt gacgcagtgg ccagtcttcc
2521 tgctcacagc ctccaccagc agctggggac tgagtgacag gaacagggga gcaggggctg
2581 ggctgggccg cagtccctgt ctgaaatgcc cgtgtgcgct ccctgtggac tgcacgctgg
2641 gttttgcctt gcaaacactg cgtgaaagtg ggcttctcct gactgctggg tgtggggcgc
2701 ccgcccccag gctcttcctc agcttcccgc agaccaagac ctacttccag cacttcaact
2761 tcgccaccgc tcggcacagg tgcgcactcc gggtgccaac gtggtgactg cactggacga
2821 cgcagtcaag aacatggaca acttggatgg cgggctgtcc atgtgagcag actgcacgcc
2881 aatgtgctgc aggtggaccc ggtcaacttc agggtgagtg cagagcgtgg tctgctgggt
2941 tggacatggc cttgagggta gggctgggcg caaggattgg gctcggtgtg ggtggggtat
3001 tcagagcggc cctgggtggt tgccgccagc agatcatgac caccccctgc cacgcagctc
3061 ctgtcccact gcctgcaggt caccctggcc aggtacctgc ctcaggactt caccgccgag
3121 accaaaactg gctgggagaa gttcctggag gaagtgacct acgtcctgac caataggtac
3181 tgcttggagc gctccacacc cctggacagc aggcaacccc tctgtggtcc tgaactgccc
3241 gggccctccc tccactcccc aataaagtca tgccaatgga tgagctgtgt cctgtattcc
3301 ttgtgctggg gggaagtagc agaacctgtt ctcagagggc tgggtcggtg tctgcagtga
3361 gggccttcaa tgccagcccg gcatcccgac tcctgcgacc ctaggggctg cactggggat
3421 ccagccgctc cctctgtccc ggggagcatc cccaggttcc ctcggagagt tcaagcggca
3481 caggcactct gagtcccgaa ggctgaaggc acaggctggt ccctggtctg ataaggttgt
3541 gcagggctgc agcgccatgc atgtgtgata agcaccccac acacacccgc actcaagtcc
3601 cgctccaaat ctcccgc
//