GenBank-Updates@genbank.bio.net (05/23/91)
LOCUS MUSIGKWF 1020 bp ds-DNA ROD 23-MAY-1991 DEFINITION Mouse Ig rearranged kappa chain gene 25-39, V-region (V-J), from a hybridoma. ACCESSION M18772 KEYWORDS immunoglobulin; immunoglobulin light-chain; joining region; kappa-immunoglobulin; processed gene; variable region. SOURCE Mouse anti-streptococcal group A carbohydrate hybridoma DNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 976 to 1020) AUTHORS Lutz,C.T. JOURNAL Unpublished (1988) STANDARD full staff_review REFERENCE 2 (bases 1 to 976) AUTHORS Lutz,C.T. and Davie,J.M. TITLE Genetics and primary structure of V-kappa gene segments encoding antibody to streptococcal group A carbohydrate: Comparison of V-kappa gene structure with idiotope expression JOURNAL J. Immunol. 140, 641-645 (1988) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence [2] kindly provided by C.T.Lutz, 06-APR-1988. The rearranged Vk differs for the germline Vk at 3 site: 787; a to t, 791; g to a, and 803; g to c. FEATURES Location/Qualifiers CDS join(247..295,667..976) /partial /note="Ig kappa chain V-region (V-J) precursor" sig_peptide join(247..295,666..677) /note="signal peptide" exon <247..295 /note="Ig kappa chain V-region (V-J) precursor, exon 1" sig_peptide 247..295 /note="signal peptide exon 1" intron 296..666 /note="Ig kappa chain intron A" sig_peptide 666..677 /note="signal peptide, exon 2" exon 667..>976 /note="Ig kappa chain V-region (V-J) precursor, exon 2" mat_peptide 678..>976 /partial /note="Ig kappa chain V-region (V-J)" misc_recomb 976^977 /note="V-region end; J-region start" misc_recomb 1014^1015 /note="J-region end; intervening DNA start" iDNA 1015..1020 /note="intervening DNA" BASE COUNT 285 a 196 c 231 g 308 t ORIGIN Chromosome 6. 1 gaattcatct gccactaata ttggcagtga ggtctgagtt aattttctac aaacatgaaa 61 tgaagtttgt caagtgacct ttgagtgtgg gatttttaac tctctaggta ctttttaaaa 121 taactctatc aaccaggaga tttgcatatt gctccctagg gacaacctct tcttgcaagt 181 gcagggtaaa agctcactcc tctttctgtc ttgattactt ttgactctcc atatcaagtt 241 cgcagaatga ggttctctgc tcagcttctg gggctgcttg tgctctggat ccctggtaag 301 gggacaaaga tgaagaagga gaattttgag ggagggggat ttctgagaca tgatgataaa 361 tatgtatatt ttgtctatgt atgagatata cagttctgtt ctccagtaaa ggacttgtga 421 ggttcaaagt gtgaagagat taaaatctgt ttttctgtga caactctgac aggttccaaa 481 gccaaaagtc aaggtgaatg ctagaatgaa gactctctgt gcttcctcta catgcatatt 541 tcatgtggag cacttttaga gtatgagtga aagacatgaa cacaataagt agaaaaaaat 601 aaaggaggga aattcacttc attgtatcat ttttttgtac ataaccaatt aattctctta 661 ttgcaggatc cactgcagat attgtgatga cgcaggctgc cttctccaat ccagtcactc 721 ttggaacatc agcttccatc tcctgcaggt ctagtaagaa tctcctacat agtaatggca 781 tcactttttt atattggtat ctccagaggc caggccagtc tcctcagctc ctgatatatc 841 gggtgtccaa tctggcctca ggagtcccaa acaggttcag tggcagtgag tcaggaactg 901 atttcacact gagaatcagc agagtggagg ctgaggatgt gggtgtttat tactgtgctc 961 aactgctaga actcccgtac acgttcggag gggggaccaa gctggaaata aaacgtaagt //