GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS RATRRNA 8579 bp ds-DNA ROD 25-MAY-1991
DEFINITION Rat genes for 18S, 5.8S, and 28S ribosomal RNAs.
ACCESSION V01270 X00133 X00521 X01069 X01117
KEYWORDS 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA;
ribosomal RNA.
SOURCE Rattus norvegicus DNA.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1644 to 3929)
AUTHORS Subrahmanyam,C.S., Cassidy,B., Busch,H. and Rothblum,L.I.
TITLE Nucleotide sequence of the region between the 18S rRNA sequence and
the 18S rRNA sequence of rat ribosomal RNA
JOURNAL Nucleic Acids Res. 10, 3667-3680 (1982)
STANDARD full automatic
REFERENCE 2 (bases 3862 to 8579)
AUTHORS Chan,Y.-L., Olvera,J. and Wool,I.G.
TITLE The structure of rat 28S ribosomal ribonucleic acid inferred from
the sequence of nucleotides in a gene
JOURNAL Nucleic Acids Res. 11, 7819-7831 (1983)
STANDARD full automatic
REFERENCE 3 (bases 1 to 1874)
AUTHORS Chan,Y.L., Gutell,R., Noller,H.F. and Wool,I.G.
TITLE The nucleotide sequence of a rat 18S ribosomal ribonucleic acid
gene and a proposal for the secondary structure of 18S ribosomal
ribonucleic acid
JOURNAL J. Biol. Chem. 259, 224-230 (1984)
STANDARD full automatic
REFERENCE 4 (sites)
AUTHORS Hadjiolov,A.A., Georgiev,O.I., Nosikov,V.V. and Yavachev,L.P.
TITLE Primary and secondary structure of rat 28S ribosomal RNA
JOURNAL Nucleic Acids Res. 12, 3677-3693 (1984)
STANDARD full staff_review
REFERENCE 5 (bases 1 to 1874)
AUTHORS Chan,Y.L.
JOURNAL Unpublished (1985)
STANDARD full automatic
COMMENT Several differences between [4] and [5] exist; length of 28S
ribosomal RNA from [4] is 4718 while from [5] it is 4802. see also
x00722 for rat 32S precursor rRNA with sequence differences
From EMBL 26 entry RNRRNA; dated 10-APR-1991.
FEATURES Location/Qualifiers
rRNA 1..1874
/note="18S rRNA"
rRNA 2941..3096
/note="5.8S rRNA"
rRNA 3862..8579
/note="28S rRNA"
BASE COUNT 1335 a 2763 c 2945 g 1536 t
ORIGIN
1 tacctggttg atcctgccag tagcatatgc ttgtctcaaa gattaagcca tgcatgtcta
61 agtacgcacg gccggtacag tgaaactgcg aatggctcat taaatcagtt atggttcctt
121 tggtcgctcg ctcctctcct acttggataa ctgtggtaat tctagagcta atacatgccg
181 acgggcgctg accccccttc ccgtgggggg aacgcgtgca tttatcagat caaaaccaac
241 ccggtcagcc ccctcccggc tccggccggg ggtcgggcgc cggcggcttt ggtgactcta
301 gataacctcg ggccgatcgc acgtccccgt ggcggcgacg acccattcga acgtctgccc
361 tatcaacttt cgatggtagt cgccgtgcct accatggtga ccacgggtga cggggaatca
421 gggttcgatt ccggagaggg agcctgagaa acggctacca catccaagga aggcagcagg
481 cgcgcaaatt acccactccc gacccgggga ggtagtgacg aaaaataaca atacaggact
541 ctttcgaggc cctgtaattg gaatgagtcc actttaaatc ctttaacgag gatccattgg
601 agggcaagtc tggtgccagc agccgcggta attccagctc caatagcgta tattaaagtt
661 gctgcagtta aaaagctcgt agttggatct tgggagcggg cgggcggtcc gccgcgaggc
721 gagctcaccg ccctgtcccc agcccctgcc tctcggcgcc ccctcgatgc tcttagctga
781 gtgtcccgcg gggcccgaag cgtttacttt gaaaaaatta gagtgttcaa agcaggcccg
841 agccgcctgg ataccgcagc taggaataat ggaataggac cgcggttcta ttttgttggt
901 tttcggaact gaggccatga ttaagaggga cggccggggg cattcgtatt gcgccgctag
961 aggtgaaatt cttggaccgg cgcaagacga accagagcga aagcatttgc caagaatgtt
1021 ttcattaatc aagaacgaaa gtcggaggtt cgaagacgat cagataccgt cgtagttccg
1081 accataaacg atgccgactg gcgatgcggc ggcgttattc ccatgacccg ccgggcagct
1141 tccgggaaac caaagtcttt gggttccggg gggagtatgg ttgcaaagct gaaacttaaa
1201 ggaattgacg gaagggcacc accaggagtg gagcctgcgg cttaatttga ctcaacacgg
1261 gaaacctcac ccggcccgga cacggacagg attgacagat tgatagctct ttctcgattc
1321 cgtgggtggt ggtgcatggc cgttcttagt tggtggagcg atttgtctgg ttaattccga
1381 taacgaacga gactctcggc atgctaacta gttacgcgac ccccgagcgg tcggcgtccc
1441 ccaacttctt agagggacaa gtggcgttca gccaccgaga ttgagcaata acaggtctgt
1501 gatgccctta gatgtccggg gctgcacgcg cgctacactg aactggctca gcgtgtgcct
1561 accctacgcc ggcaggcgcg ggtaacccgt tgaaccccat tcgtgatggg gatcggggat
1621 tgcaattatt ccccatgaac gaggaattcc cagtaagtgc gggtcataag cttgcgttga
1681 ttaagtccct gccctttgta cacaccgccc gtcgctacta ccgattggat ggtttagtga
1741 ggccctcgga tcggccccgc cggggtcggc ccacggcctt ggcggaggcc tgagaagacg
1801 gtcgaacttg actatctaga ggaagtaaaa gtcgtaacaa ggtttccgta ggtgaacctg
1861 cggaaggatc attaacggag aaggccgagg ggggtcgtgc ccgtcccctc ttgggcctgt
1921 gtgagtgttc ctccttctcg ccgggaggcg cgtccccggg tgggtccccg tgtccggcgt
1981 cctggcgtcg tggcgcgtgc cgtggccggc cggcggaggg ggtttcggga caggtgtgcg
2041 gtggcagggt gtcgggtctg gtccgccgcg ggacctcctc cgttttctcg ctcttccctc
2101 gacgcctccg tgcgcccgcc tccgcctccg ccgctgccgt cggcagcgag ggcgttctgc
2161 ctctttcccg accggctccg tgatctcgtg tgcaccgggg gtggtacgtg atctctccgg
2221 gcggtggccg ggacgcgctc gctctcctcg aggcgcctgc cgctcctccc ccgccgcggc
2281 tctccggcac tgacggtgcc ggtggctccg ccgcgtgcgg tggggggggg tgtgtgtgcc
2341 ggtgccgcgg gtgggctcgc gcgccccgcc gcgtccttct gggcctccgt gtccgccccg
2401 ctcctgtccg ggtacctgct ctcgcgttcc ggcgcggagg tttcgcgacc ccgggggggt
2461 cgccctaccg tccccggggt cgggggggcg gtggggcccg tagggacgtc ggtcgtccgc
2521 gggagggctt cccggtccct ccccgcgtcc ggcgctccct cagactcagc ggcgcacccc
2581 tctgccgccg gcgcttcccg aggcggcggt tcgggggggc gtgtcgcgag ccccctctgg
2641 gcgcccgagg ggttcccggc ccgagcgcct ggcttgtccc gcccgttggc gggccgccgc
2701 cgggtgccgg gttcgtggcg tcccgtgtcc cgtgtgtccc gcctttccgt ctccgaccct
2761 gtcttttttt ttttattttc ttacgtgtgc cgtttcgttt cgcgctggcc ggcctgaggc
2821 ggagccccct cgccgtccgt cgggcccctc ccatcccgcg caggaggggc gggcgggggc
2881 gcttgttgcg gtcgtcagca ccccgtgtgc ggagttccgc tcacacctca gataaccgta
2941 cgactcttag cggtggatca ctcggctcgt gcgtcgatga agaacgcagc tagctgcgag
3001 aattaatgtg aattgcagga cacattgatc atcgacactt cgaacgcact tgcggccccg
3061 ggttcctccc ggggctacgc ctgtctgagc gtcgcttgac gatcaatcgc cgcccccctt
3121 gcggtttcgc cgccgcgggg gggatcgcgt cgcgcggctg ggagtctgct cgcagggccc
3181 gctccccggg gccctccgtc tcccgaagtt ccgacgtggg cggcgtccgg cgttcgcccg
3241 cgccccgtgg gtccgcgcgg gctcgtcctc cctgcccgcc gtcgtcgtgc ggccgggcgg
3301 ccctcctcgc ggctccttcc ccgcgcgctc cgccgctccc gctcccgtcc tcgcccgctc
3361 tcccccgccg tgggacgcgt cggcggggcc ggtcgggtgc tgggcgcgga gagggggggg
3421 aaagtcgcgt cgccggggtc gttcgccgcg cctccggtgg ggtggggggc cgggaccccg
3481 cccgcggggc cggcgcgtcc gccgccgccg cgcgcccgcc cggtgcgtgc ggagagagag
3541 agagagagag agacccgcga gggtcgttcg ggggggccgt accgcgcccg cggggccggt
3601 ctcgcgtccc tctcctcccc cgctccctct accggggccg accgctccgg cgccggcccg
3661 cggcgccgcg gcgtccgtgc gccgacgcga cttgcccccg ggatgtgggg ccggccggcg
3721 aaggagaggt cgcgggctcc ggcctggctc ccccggcgcc ctcgccccgt cgtcccgtcg
3781 ttctcgctct cgctctcctc tcctctcctc tccttccgtc gcccgcgcgc gcccacctct
3841 cctccttctc ctcctctgga ccgcgacctc agatcagacg tggcgacccg ctgaatttaa
3901 gcatattagt cagcggagga aaagaaacta accaggattc cctcagtaac ggcgagtgaa
3961 cagggaagag cccagcgccg aatccccgcc gcgcgccgcg gcgcgggaaa tgtggcgtac
4021 ggaagaccca ctccccggcg ccgctcgtgg ggggcccaag tccttctgat cgaggcccag
4081 cccgtggacg gtgtgaggcc ggtagcggcc ccggcgcgcc gggccgggtc ttcccggagt
4141 cgggttgctt gggaatgcag cccaaagcgg gtggtaaact ccatctaagg ctaaataccg
4201 gcacgagacc gatagccaac aagtaccgta agggaaagtt gaaaagaact ttgaagagag
4261 agttcaagag ggcgtgaaac cgttaagagg taaacgggtg gggtccgcgc agtccgcccg
4321 gaggattcaa cccggcggcg cgcgccggcc ggccggtggt cccggcggat ctttcccgct
4381 ccccgttcct cccgacccct ccacccgcgc gtctctctcc cccctccccg cgtcccgccg
4441 tcgccgtccc cgctcctccc tccggggggg tgtcggcggg cgctccggcg gcgggcgcgg
4501 ggtgtggtgg gggcgcgcgg gcggggccgg gggtggggtc ggcgggggac cgcccccggt
4561 cggcgaccgg ccgccgccgg gcgcacttcc accgtggcgg tgcgccgcga ccggctccgg
4621 gacggctggg aaggcccggc ggggaaggtg gctcgggggg ggcggcgtca cccgtgggcg
4681 ccggaccacc ccgccccgag tgttacagcc ccccggcagc agcgctcgcc gaatcccggg
4741 gccgagggag ccggataccc gtcgccgcgc tctccccccg gcctctcccc tcccgcccct
4801 ccccgtgggg tggcggaaag gggggcggtc gcgggggccg ggccgcccct cccacggcgc
4861 gaccgctctc ccaccccccg tcgcctccgt cgtccctctc gggggtccgg gggcccgggg
4921 ggcggggcgg actgtcccca gtgcgccccg ggcgtcgtcg cgccgtcggg cccggggggg
4981 ccgtcgtcac gcgctctccc tccccttctc ggggtggggg ggagcgaagc cgagcgcacg
5041 gggtcggcgg cgatgtcggc tacccacccg acccgtcttg aaacacggac caaggagtct
5101 aacgcgtgcg cgagtcaggg gctcgtccga aagccgccgt ggcgcaatga aggtgaaggg
5161 ccccgttccc gggggccccg aggtgggatc ccgaggcctc tccagtccgc cgagggcgca
5221 ccaccggccc gtctcgcccg ccgcgccggg gaggtggagc acgagcgtac gcgttaggac
5281 ccgaaagatg gtgaactatg cttgggcagg gcgaagcaga ggaaactctg gtggaggtcc
5341 gtagcggtcc tgacgtgcaa atcggtcgtc cgacttgggt ataggggcga aagactaatc
5401 gaaccatcta gtagctggtt ccctccgaag tttccctcag gatagctggc gctctcgcaa
5461 cgcgttcgct cgacaacccg cagttttatc cggtaaagcg aatgattaga ggtcttgggg
5521 ccgaaacgat ctcaacctat tctcaaactt taaatgggta agaagcccgg ctcgctggcg
5581 tggagccggg cgtggatgcg agtgcctagt gggccacttt tggtaagcag aactggcgct
5641 gcgggatgaa ccgaacgccg ggttaaggcg cccgatgccg acgctcatca gaccccagaa
5701 aaggtgttgg ttgatataga cagcaggacg gtggccatgg aagtcggaat ccgctaggag
5761 tgtgtaacaa ctcacctgcc gaatcaacta gccctgaaaa tggatggcgc tggagcgtcg
5821 ggcccatacc cggccgtcgc cggcagtcgg aacgggacgg gagcggccgc gggcgcgcga
5881 ccccgggggc cgggcggcgt cggcttcggc cggccgccgc ccgtccaccc ccggggctcc
5941 ccccgcggcg tcgggccccg cggagcctac gccgcgacga gtaggagggc cgctgcggtg
6001 agccttgaag cctagggcgc gggcccgggt ggagccgccg caggtgcaga tcttggtggt
6061 agtagcaaat attcaaacga gaactttgaa ggccgaagtg gagaagggtt ccatgtgaac
6121 agcagttgaa catgggtcag tcggtcctga gagatgggcg agtgccgttc cgaagggacg
6181 ggcgatggcc tccgttgccc tcagccgatc gaaagggagt cgggttcaga tccccgaatc
6241 cggagtggcg gagatgggcg ccgcgaggcg tccagtgccg gtaacgcgac cgatcccgga
6301 gaagccggcg ggagcccggg gagagttctc ttttctttgt gaagggcagg gcgccttgga
6361 atgggttcgc cccgagagag gggcccgtgc cttggaaagc gtcgcagttc cggcggcgtc
6421 cggtgagctc tcgctggccc ttgaaaatcc gggggagagg gtgtaaatct cgcgccgggc
6481 cgtacccata tccgcagcag gtctccaagg tgaacgcctc tggcatgttg gaacaatgta
6541 ggtaagggaa gcggcaagcc ggatccgtaa cttcgggata aggattggct ctaagggctg
6601 ggtcggtcgg gctggggcgc gaaggcgggg ctgggcgcgc gccgcggctg gacgaggcgc
6661 cgccgccccc ctcccacgtc cggggagacc ccctcctttc cgcccgggcc cgccctcccc
6721 tctccccgcg gggccccgcc gtcccccgcg tcgtcgccgt ggtcccctcc tccctccctt
6781 cttccccgtc cgcggggggg acggggcggg tgcggggggg cgcgcgcgcg cgcggcccag
6841 gggcggcggg tccaaccccg cgcgggccgg agcgggggga acccgcgggc ccccggtggg
6901 ggggggcccg gacacccggg ggggaccggc ggcggcggcg actctggacg cgagccgggc
6961 ccttcccgtg gatcgcccca gctgcggcgg gcgtcgcggc cgctcccggg gagcccggcg
7021 ggtcgcccgg cggggttttc ctccggcctc gtcctccccc ttccccctcc gcggggtcgg
7081 gggttcccgg ggttcggggt tctcctccgc gcggcggttc ccccgccggg tgcgcccccc
7141 gggcgcggtt tcccgcggcc gcccgcctcg gccggcgcct agcagccgac ttagaactgg
7201 tgcggactag gggaatccga ctgtttaatt aaaacaaagc atcgcgaagg cccgcggcgg
7261 gtgttgacgc gatgtgattt ctgcccagtg ctcagaatgt caaagtgaag aaattcaatg
7321 aagcgcgggt aaacggcggg agtaactatg actctcttaa ggtagccaaa tgcctcgtca
7381 tctaattagt gacgcgcatg aatggatgaa cgagattccc actgtcccta cctactatcc
7441 agcgaaacca cagccaaggg aacgggcttg gcggaatcag cggggaaaga agaccctgtt
7501 gagcttgact ctagtctggc acggtgaaga gacatgagag gtgtagaata agtgggaggc
7561 ccccggcgcc cccccgttcc ccgcgagggg tcggggcggg gtccgccggc ctcgcgggcc
7621 gccggtgaaa taccactact ctcatcgttt tttcactgac ccggtgaggc gggggggcga
7681 gccccgaggg gctctcgctt ctggcgccga acgcgtccgc gcgcgcggcg ggcgcgaccc
7741 gctccgggga cagtgccagg tggggagttt gactggggcg gtacacctgt caaacggtaa
7801 cgcaggtgtc ctaaggcgag ctcagggagg acagaaacct cccgtggagc agaagggcaa
7861 aagctcgctt gatcttgatt ttcagtacga atacagaccg tgaaagcggg gcctcacgat
7921 ccttctgacc ttttgggttt taagcaggag gtgtcagaaa agttaccaca gggataactg
7981 gcttgtggcg gccaagcgtt catagcgacg tcgctttttg atccttcgat gtcggctctt
8041 cctatcattg tgaagcagaa ttcaccaagc gttggattgt tcacccacta atagggaacg
8101 tgagctgggt ttagaccgtc gtgagacagg ttagttttac cctactgatg atgtgttgtt
8161 gccatggtaa tcctgctcag tacgagagga accgcaggtt cagacatttg gtgtatgtgc
8221 ttggctgagg agccaatggg gcgaagctac catctgtggg attatgactg aacgcctcta
8281 agtcagaatc cgcccaagcg gaacgatacg gcagcgccga aggagcctcg gttggccccg
8341 gatagccggc tccccgtccg tccccgtccg gcgggtcccc gcctcgtcgc ccccccggga
8401 aacggggtgc ggccggaaag ggggccgccc tctcgcccgt cacgcttaac gcacgttcgt
8461 gtggaacttg gcgctaaacc attcgtagac gacctgcttc tgggtcgggg tttcgtacgt
8521 agcagagcag ctccctcgct gcgatctatt gaaagtcagc cctcgacaca agggtttgt
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