GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS LSVLVGPCN 3417 bp ss-mRNA VRL 25-MAY-1991
DEFINITION Nigeria Lassa virus S (small) RNA for glycoprotein precursor (GPC)
and nucleocapsid protein
ACCESSION X52400
KEYWORDS N protein; envelope protein; glycoprotein; nucleocapsid protein.
SOURCE Lassa virus RNA.
ORGANISM Lassa virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Arenaviridae.
REFERENCE 1 (bases 1 to 3417)
AUTHORS Clegg,J.C.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 3417)
AUTHORS Clegg,J.C., Wilson,S.M. and Oram,J.D.
JOURNAL Virus Res. 18, 151-164 (1990)
STANDARD full automatic
COMMENT SWISS-PROT; P04935; NCAP$LASSG. SWISS-PROT; P17332; VGLY$LASSG.
*source: strain=GA391; See also <K03362> for overlapping sequence.
Data kindly reviewed (02-JUL-1990) by Clegg J.S.S.
From EMBL 26 entry ARLVGPCN; dated 15-APR-1991.
FEATURES Location/Qualifiers
CDS 71..1540
/note="glycoprotein precursor (AA 1-490)"
/codon_start=71
misc_feature 1555..1596
/note="intergenic hairpin region"
CDS complement(1606..3315)
/note="nucleocapsid protein (AA 1-570)"
/codon_start=3315
BASE COUNT 946 a 799 c 707 g 965 t
ORIGIN
1 gcaccgggga tcctaggcat ttaggattgc gcattttaaa acctcctttt tggaaagtgt
61 cgcaatcagg atgggacaga ttgtgacatt cttccaagaa gttcctcatg ttattgagga
121 agtgatgaat attgtcctta ttgcactatc catcctagca attctgaagg gactatacaa
181 tgttgccacg tgtggcttga tagggcttgt cacattcctt ctactttcag gaaggtcatg
241 ctcactgatc tacaaaggga cttacgagct gcaaaccctt gagttgaata tggagactct
301 taatatgacc atgccgctat cctgcacaaa gaacaacagt catcattata taagggtggg
361 gaatgagaca ggacttgagc tcaccttgac caacaccagc attcttaatc acaaattctg
421 taacctctct gatgcccaca aaaggaatct ttatgatcac agcctcatga gtatcatctc
481 tacctttcat ctgtccattc ccaacttcaa tcaatatgag gcaatgagct gcgatttcaa
541 tggggggaaa atcactgtgc aatacaacct gagtcatagc ttcgcagtgg atgcagcagg
601 tcactgcggc acacttgcaa atggtgtctt acaaacattt atgagaatgg cttggggagg
661 gagttatatt gctcttgatt ctggacgcgg taactgggac tgtataatga ccagttacca
721 atatctaatc attcagaata caacctggga tgaccactgc caattttcca gaccatcacc
781 tattggctac cttgggcttc tctcacaaag aactagagac atatacatta gcagaaggtt
841 gttggggaca ttcacctgga cactatcaga ctcagaggga aatgaaacac cagggggata
901 ctgccttact agatggatgt tgattgaggc cgaattaaag tgctttggaa acactgcagt
961 agccaagtgc aatgagaaac atgatgaaga attttgtgac atgctaaggt tgttcgattt
1021 caacaaacag gccataagga ggctcaaaac agaggcccaa atgagcatac agctgatcaa
1081 caaggctgtc aatgctttaa taaatgatca gctcatcatg aagaaccact tgagagacat
1141 catgggcata ccatattgta actacagcag atattggtac cttaaccaca catcaacagg
1201 aaagacctca ctaccaaggt gttggcttat ctcaaatgga tcatatctca atgagaccaa
1261 gttttcagat gacatcgaac aacaagctga caacatgata acagagatgc tacaaaagga
1321 atacatagat agacagggca aaactccact ggggttagtt gacctatttg tttttagcac
1381 aagtttctat ctgataagca tctttctcca cctggtcaaa ataccaaccc atagacacat
1441 tgtaggtaaa ccttgcccaa aaccccacag gctgaaccac atgggcatct gctcctgtgg
1501 tctatacaaa cagccaggtg tgcctgtcag atggaagagg tgaaatccca cagggccccc
1561 gtgacccacc gccaattggc ggtgggtcac gggggcgtcc atctacagga cgactttagg
1621 tgttgaagtt ctgaacacca tgtctctagg gagcacaact ctcaggactt ttgcatcaag
1681 tcctcctgaa actgctgcat caaacataat gcaatccatc agtgcacaat gaggagttat
1741 ttcctcttta ccacctctct tctttttctc cacaactacc ccagtgtgca tgtgacatag
1801 atccttgaat tgatcccaaa cagcattctc aaactttctt gaatctgctt tactaagagt
1861 gatgtcaatc agttttatgt ctctcctccc ttgtgactca aggagttttc tgatatcctc
1921 tgatccttgg caagtgatga ccatgttccg aggaagggct tctatcactg cactggttaa
1981 cccaggttgg gcagcaaaca aatcagtcac atcaatacca tgtgaatact ttgcatcttg
2041 tttgaattgc ttcaaatctg ttggctccct aaagaaatgt acatagcaac ccgagctcgg
2101 ttgataaagg gctatctcaa ctgggtcttc tggtcttcct tcaatatcca tccaggtttt
2161 tgcgttggga atcaagttga agcacttgaa atctttgaga gtcatcaact gagagtaagt
2221 taatcctgca gcaaagcctg cagactgtaa tgacttgttg gaccccccat ttccaatttt
2281 ctggggcttg ttgtcttgct caaggtccac cacagtattt tcccatgctc ttcccacaat
2341 cgaggtcctt gatgcaatat agggccatcc gtctcctgag agacagatct tgtataggat
2401 gttctcataa gggttccttt cacccggtgt gtctgataca aacattccca gactcttctt
2461 aactttcaag attgacttca agataccatc catggtctga ggtgaaacct taatagtctc
2521 taacatgtta ccaccatcaa gcatgcaggc ccctgctttg acagcagcac ccaaactgaa
2581 attgtaacca gagatgttga gtgaactttt cttagtgtca atcatattca gaattggatg
2641 actctgagac aatctgtcga gatcagatga gttggggtat ttggctgtgt aaatcagccc
2701 taaatctgtc aaagcttgaa cggcatcatt caggtccact tgcccctgtt tggtcaggca
2761 tgctaaagtt aggcttggca ttgttccgaa ctgattgttg agtaactctg catttttgac
2821 atcccaaact ctcacaatgc catcactggc accctttccc cctccactta ctccagtcat
2881 gccaatcatg ttcaaaaggg ctctcctttg atcaagctgt tgtgaactca aattccccat
2941 ataaactcct gaactcaaag gcctttctgt tctggtgact tttgatttca gtttttctaa
3001 atcagcggcc aggattagta gatcgtctga acttaaggtt ccaactctta agacactttt
3061 ctgctgtgtg gatttgagct caacaagatt gttgactgct tgattgagat ctctcagtcg
3121 ttttaggtcg ccatcatctc ttttctgctt gcgcatcaat ctctgaacat tactgacctc
3181 ggagaagtca agaccatgaa ggagagcttg agcgtcttta actacctgca actttatgtt
3241 ggaacagtag ccagatagtt cccttcttag ggattgagtc cacaagaatg acctcacttc
3301 cttggaagca ctcattgtcg tgatggttgt ctgacccttg agtgggtctt gaatgtggtc
3361 actccaaagg tttgattagt gcaaagcgca atccaatagc ctaggatcca ctgtgcg
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