GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS LSVLVGPCN 3417 bp ss-mRNA VRL 25-MAY-1991 DEFINITION Nigeria Lassa virus S (small) RNA for glycoprotein precursor (GPC) and nucleocapsid protein ACCESSION X52400 KEYWORDS N protein; envelope protein; glycoprotein; nucleocapsid protein. SOURCE Lassa virus RNA. ORGANISM Lassa virus Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses; Arenaviridae. REFERENCE 1 (bases 1 to 3417) AUTHORS Clegg,J.C. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 3417) AUTHORS Clegg,J.C., Wilson,S.M. and Oram,J.D. JOURNAL Virus Res. 18, 151-164 (1990) STANDARD full automatic COMMENT SWISS-PROT; P04935; NCAP$LASSG. SWISS-PROT; P17332; VGLY$LASSG. *source: strain=GA391; See also <K03362> for overlapping sequence. Data kindly reviewed (02-JUL-1990) by Clegg J.S.S. From EMBL 26 entry ARLVGPCN; dated 15-APR-1991. FEATURES Location/Qualifiers CDS 71..1540 /note="glycoprotein precursor (AA 1-490)" /codon_start=71 misc_feature 1555..1596 /note="intergenic hairpin region" CDS complement(1606..3315) /note="nucleocapsid protein (AA 1-570)" /codon_start=3315 BASE COUNT 946 a 799 c 707 g 965 t ORIGIN 1 gcaccgggga tcctaggcat ttaggattgc gcattttaaa acctcctttt tggaaagtgt 61 cgcaatcagg atgggacaga ttgtgacatt cttccaagaa gttcctcatg ttattgagga 121 agtgatgaat attgtcctta ttgcactatc catcctagca attctgaagg gactatacaa 181 tgttgccacg tgtggcttga tagggcttgt cacattcctt ctactttcag gaaggtcatg 241 ctcactgatc tacaaaggga cttacgagct gcaaaccctt gagttgaata tggagactct 301 taatatgacc atgccgctat cctgcacaaa gaacaacagt catcattata taagggtggg 361 gaatgagaca ggacttgagc tcaccttgac caacaccagc attcttaatc acaaattctg 421 taacctctct gatgcccaca aaaggaatct ttatgatcac agcctcatga gtatcatctc 481 tacctttcat ctgtccattc ccaacttcaa tcaatatgag gcaatgagct gcgatttcaa 541 tggggggaaa atcactgtgc aatacaacct gagtcatagc ttcgcagtgg atgcagcagg 601 tcactgcggc acacttgcaa atggtgtctt acaaacattt atgagaatgg cttggggagg 661 gagttatatt gctcttgatt ctggacgcgg taactgggac tgtataatga ccagttacca 721 atatctaatc attcagaata caacctggga tgaccactgc caattttcca gaccatcacc 781 tattggctac cttgggcttc tctcacaaag aactagagac atatacatta gcagaaggtt 841 gttggggaca ttcacctgga cactatcaga ctcagaggga aatgaaacac cagggggata 901 ctgccttact agatggatgt tgattgaggc cgaattaaag tgctttggaa acactgcagt 961 agccaagtgc aatgagaaac atgatgaaga attttgtgac atgctaaggt tgttcgattt 1021 caacaaacag gccataagga ggctcaaaac agaggcccaa atgagcatac agctgatcaa 1081 caaggctgtc aatgctttaa taaatgatca gctcatcatg aagaaccact tgagagacat 1141 catgggcata ccatattgta actacagcag atattggtac cttaaccaca catcaacagg 1201 aaagacctca ctaccaaggt gttggcttat ctcaaatgga tcatatctca atgagaccaa 1261 gttttcagat gacatcgaac aacaagctga caacatgata acagagatgc tacaaaagga 1321 atacatagat agacagggca aaactccact ggggttagtt gacctatttg tttttagcac 1381 aagtttctat ctgataagca tctttctcca cctggtcaaa ataccaaccc atagacacat 1441 tgtaggtaaa ccttgcccaa aaccccacag gctgaaccac atgggcatct gctcctgtgg 1501 tctatacaaa cagccaggtg tgcctgtcag atggaagagg tgaaatccca cagggccccc 1561 gtgacccacc gccaattggc ggtgggtcac gggggcgtcc atctacagga cgactttagg 1621 tgttgaagtt ctgaacacca tgtctctagg gagcacaact ctcaggactt ttgcatcaag 1681 tcctcctgaa actgctgcat caaacataat gcaatccatc agtgcacaat gaggagttat 1741 ttcctcttta ccacctctct tctttttctc cacaactacc ccagtgtgca tgtgacatag 1801 atccttgaat tgatcccaaa cagcattctc aaactttctt gaatctgctt tactaagagt 1861 gatgtcaatc agttttatgt ctctcctccc ttgtgactca aggagttttc tgatatcctc 1921 tgatccttgg caagtgatga ccatgttccg aggaagggct tctatcactg cactggttaa 1981 cccaggttgg gcagcaaaca aatcagtcac atcaatacca tgtgaatact ttgcatcttg 2041 tttgaattgc ttcaaatctg ttggctccct aaagaaatgt acatagcaac ccgagctcgg 2101 ttgataaagg gctatctcaa ctgggtcttc tggtcttcct tcaatatcca tccaggtttt 2161 tgcgttggga atcaagttga agcacttgaa atctttgaga gtcatcaact gagagtaagt 2221 taatcctgca gcaaagcctg cagactgtaa tgacttgttg gaccccccat ttccaatttt 2281 ctggggcttg ttgtcttgct caaggtccac cacagtattt tcccatgctc ttcccacaat 2341 cgaggtcctt gatgcaatat agggccatcc gtctcctgag agacagatct tgtataggat 2401 gttctcataa gggttccttt cacccggtgt gtctgataca aacattccca gactcttctt 2461 aactttcaag attgacttca agataccatc catggtctga ggtgaaacct taatagtctc 2521 taacatgtta ccaccatcaa gcatgcaggc ccctgctttg acagcagcac ccaaactgaa 2581 attgtaacca gagatgttga gtgaactttt cttagtgtca atcatattca gaattggatg 2641 actctgagac aatctgtcga gatcagatga gttggggtat ttggctgtgt aaatcagccc 2701 taaatctgtc aaagcttgaa cggcatcatt caggtccact tgcccctgtt tggtcaggca 2761 tgctaaagtt aggcttggca ttgttccgaa ctgattgttg agtaactctg catttttgac 2821 atcccaaact ctcacaatgc catcactggc accctttccc cctccactta ctccagtcat 2881 gccaatcatg ttcaaaaggg ctctcctttg atcaagctgt tgtgaactca aattccccat 2941 ataaactcct gaactcaaag gcctttctgt tctggtgact tttgatttca gtttttctaa 3001 atcagcggcc aggattagta gatcgtctga acttaaggtt ccaactctta agacactttt 3061 ctgctgtgtg gatttgagct caacaagatt gttgactgct tgattgagat ctctcagtcg 3121 ttttaggtcg ccatcatctc ttttctgctt gcgcatcaat ctctgaacat tactgacctc 3181 ggagaagtca agaccatgaa ggagagcttg agcgtcttta actacctgca actttatgtt 3241 ggaacagtag ccagatagtt cccttcttag ggattgagtc cacaagaatg acctcacttc 3301 cttggaagca ctcattgtcg tgatggttgt ctgacccttg agtgggtctt gaatgtggtc 3361 actccaaagg tttgattagt gcaaagcgca atccaatagc ctaggatcca ctgtgcg //