GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS CXBCOXB4 7395 bp ss-mRNA VRL 25-MAY-1991 DEFINITION Coxsackie virus B4 complete genome ACCESSION X05690 KEYWORDS complete genome; polymerase; protease. SOURCE Coxsackievirus B4 RNA. ORGANISM Coxsackievirus B4 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7395) AUTHORS Jenkins,O., Booth,J.D., Minor,P.D. and Almond,J.W. TITLE The Complete Nucleotide Sequence of Coxsackievirus B4 and Its Comparison to Other Members of the Picornaviridae JOURNAL J. Gen. Virol. 68, 1835-1848 (1987) STANDARD full automatic REFERENCE 2 (bases 1 to 7395) AUTHORS Jenkins,O. JOURNAL Unpublished (1989) STANDARD full automatic COMMENT SWISS-PROT; P08292; POLG$COXB4. *source: strain=J.V.B. Benschoten; Data kindly reviewed (11-FEB-88) by Jenkins O. From EMBL 26 entry PICOXB4; dated 26-APR-1991. FEATURES Location/Qualifiers misc_feature 744..949 /note="VP 4 (AA 1-69) (949 is 2nd base in codon)" CDS 744..7292 /product="polyprotein CB4" /codon_start=744 misc_feature 950..1732 /note="VP 2 (AA 70-330) (950 is 3rd base in codon) (1732 is 2nd base in codon)" old_sequence 1043..1045 /note="cgt was cct in [1]" /citation=[1] old_sequence 1171..1173 /note="agt was act in [1]" /citation=[1] old_sequence 1217..1219 /note="ggg was gcg in [1]" /citation=[1] misc_feature 1733..2446 /note="VP 3 (AA 331-568) (1733 is 3rd base in codon) (2446 is 2nd base in codon)" misc_feature 2447..3298 /note="VP 1 (AA 569-852) (2447 is 3rd base in codon) (3298 is 2nd base in codon)" misc_feature 3299..3739 /note="P2-A (AA 853-999) (3299 is 3rd base in codon) (3739 is 2nd base in codon)" misc_feature 3740..4036 /note="P2-B (AA 1000-1098) (3740 is 3rd base in codon) (4036 is 2nd base in codon)" misc_feature 4037..5023 /note="P2-C (AA 1099-1427) (4037 is 3rd base in codon) (5023 is 2nd base in codon)" old_sequence 4233..4235 /note="ggc was gcc in [1]" /citation=[1] misc_feature 5024..5290 /note="P 3-A (AA 1428-1516) (5024 is 3rd base in codon) (5290 is 2nd base in codon)" old_sequence 5117..5119 /note="agt was act in [1]" /citation=[1] misc_feature 5291..5356 /note="V Pg (AA 1517-1538) (5291 is 3rd base in codon) (5356 is 2nd base in codon)" misc_feature 5357..5905 /note="protease (P3-C) (AA 1538-1721) (5357 is 3rd base in codon) (5905 is 2nd base in codon)" old_sequence 5875..5877 /note="ggc was gcc in [1]" /citation=[1] misc_feature 5906..7292 /note="polymerase (P3-D) (AA 1722-2183) (5906 is 3rd base in codon)" old_sequence 6032..6034 /note="cct was cgt in [1]" /citation=[1] old_sequence 6351..6353 /note="gga was gca in [1]" /citation=[1] old_sequence 6448..6450 /note="tga was tca in [1]" /citation=[1] polyA_site 7395..7395 BASE COUNT 2093 a 1693 c 1838 g 1771 t ORIGIN 1 ttaaaacagc ctgtgggttg tacccaccca cagggcccaa tgggcgctag cacactggta 61 ttccggtacc tttgtgcgcc tgttttataa ccccccccca gttcgcaact tagaagcaaa 121 gaaacaatgg tcaattactg acgcagcaac ccagctgtgt tttggccaag tacttctgtg 181 tccccggact gagtatcaat aagctgcttg cgcggctgaa ggagaaaccg ttcgttaccc 241 ggccaactac ttcgagaagc ctagtaacgc catgaacgtt gaggagtgtt tcgctcagca 301 cttcccccgt gtagttcagg tcgatgagtc accgcgttcc ccacgggtga ccgtggcggt 361 ggctgcgttg gcggcctgcc tgtggggcaa cccgcaggac gctctgatac agacatggtg 421 tgaagagcct attgagctag ttggtagtcc tccggcccct gaatgcggct aatcctaact 481 gcggagcaca cgttcgcaag ccagcgagtg gtgtgtcgta acgggcaact ctgcagcgga 541 accgagtact ttgggtgtcc gtgtttcctt ttattcttac cttggctgct tatggtgaca 601 attgaaagat tgttaccata tagctattgg attggccatc cagtgtcaaa tagagcaatc 661 atatatctgt ttgttggttt cgttcccttg gactacagaa atcttaaaac tctttatttc 721 atattgagac tcaatacgat aaaatgggag cacaggtgtc aacacaaaag acaggggcac 781 acgagactag tttgagcgcc agtggaaact cgattattca ttacaccaac ataaactatt 841 acaaggatgc tgcttcaaat tcggccaata ggcaagattt tacacaagac cctagtaaat 901 tcacagaacc ggtaaaggat gtgatgataa agtcgctgcc agcgctcaat tccccgactg 961 tagaggagtg cggatatagc gacagagtta gatcaataac actcgggaac tcgactataa 1021 cgacacaaga gtgtgcaaac gtcgtggtgg ggtatggcgt ctggcccgat tatcttagcg 1081 acgaagaggc aacagcggaa gaccagccca cccaacctga tgtggcaacg tgtaggtttt 1141 acacgttgaa ttcagtgaaa tgggagatgc agtcagcggg gtggtggtgg aagttcccag 1201 atgcattgtc agaaatgggg ctctttgggc agaatatgca atatcactac ctaggcagat 1261 cagggtacac aattcatgtg caatgcaacg catccaaatt ccaccaaggt tgtctgcttg 1321 tggtgtgtgt gcctgaggct gagatgggat gtaccaatgc agaaaacgca cccgcgtatg 1381 gtgatttgtg tggaggagag acagcaaaga gtttcgaaca gaatgcagcc acaggtaaga 1441 cagctgtgca gacggctgtg tgcaatgcgg gtatgggtgt gggggttggt aacttgacta 1501 tataccctca ccaatggatt aatttaagaa caaacaatag tgccaccata gtgatgccat 1561 acattaatag cgtcccaatg gacaacatgt tcaggcataa taactttaca ttaatgataa 1621 taccctttgc accgttggac tacgttacgg gagcgtcctc ttacatccct atcacagtga 1681 cagttgcccc tatgagcgct gagtacaatg gtttgcgtct agctggtcat caaggcttac 1741 caactatgct tacaccaggc agcacgcagt ttttgacgtc agatgatttt caatcaccat 1801 cagctatgcc acagtttgat gtgaccccag agatgaacat tccagggcaa gtgaggaacc 1861 tgatggaaat tgcggaagtt gattctgtgg taccaatcaa taacttgaaa gctaatctga 1921 tgacgatgga ggcttaccgg gtgcaggtta ggtccactga cgagatggga ggacagatat 1981 ttggcttccc cttacagcca ggggcatcaa gcgtgttaca aagaacacta ctgggagaga 2041 tattaaatta ctacactcat tggtcaggga gcctcaagtt aacatttgtg ttctgtgggt 2101 cggcaatggc aactggcaaa ttcttactag catactcacc acctggagca ggggcaccag 2161 acagcaggaa gaacgctatg ttagggaccc acgtcatatg ggacgttgga ctgcaatcca 2221 gctgtgtgct ctgtgtaccg tggatcagcc agacgcacta caggtatgtt gttgatgaca 2281 agtacacggc tagtggtttc atttcgtgct ggtaccaaac taatgtcata gtcccagctg 2341 aagctcagaa atcgtgctac ataatgtgct ttgtgtcagc atgcaacgat ttctctgtac 2401 gcatgttgag ggacacgcaa ttcattaagc aaacaaactt ttatcaggga ccaacagaag 2461 agtccgtgga gagagcaatg gggagagttg cagacacgat tgcccgcggc ccatcgaact 2521 ctgagcaaat cccagctctg acagctgtgg agactggaca tacttcccag gtggatccaa 2581 gtgacacgat gcaaacaaga catgtgcata actaccactc cagatcagaa tcatctatag 2641 aaaacttcct gtgcagatct gcttgcgtaa tttatataaa atactccagt gctgaatcaa 2701 acaacctgaa gcggtatgcg gagtgggtta tcaacacaag gcaggtggct caactaaggc 2761 gaaagatgga aatgttcact tatattcggt gcgacatgga gcttaccttt gtgattacca 2821 gccatcagga gatgtccacc gccactaact cagatgttcc agtgcagaca caccaaataa 2881 tgtacgtgcc acctggcggc cctgtaccaa cgtcagtcaa cgactacgtg tggcaaacat 2941 ccaccaaccc cagcatcttt tggacagagg gcaatgcacc accaaggatg tccataccgt 3001 tcatgagtat tggcaatgct tacaccatgt tttatgacgg gtggtcaaac ttctccagag 3061 acggcatata tggatataat tcattaaaca acatggggac catatatgcg cgccatgtta 3121 atgattctag cccaggggga ctgaccagca ccatccgcat ctacttcaaa cccaaacacg 3181 tcaaagcata tgtgccacgc cccccccgtt tgtgtcaata caagaaagcc aagagtgtga 3241 actttgatgt tgaggccgtt acagcggagc gtgcaagctt gataaccaca ggcccctatg 3301 gacatcaatc aggggccgtg tatgtgggca attacaaggt agtcaatagg cacttggcca 3361 cgcacgtgga ttggcaaaat tgcgtgtggg aggattataa tagagacctt ctagtgagta 3421 ctaccacggc ccacgggtgc gacaccattg ccagatgcca atgcacaaca ggtgtgtact 3481 tttgcgcctc caagagcaaa cactacccag ttagctttga aggaccaggt ttggtggaag 3541 tccaagaaag tgaatattac ccaaaaagat accagtctca tgtgttgctt gctacagggt 3601 tctccgaacc aggagattgc ggtggaattc tcaggtgcga acacggcgtc atcggtcttg 3661 tcaccatggg tggtgaaggc gtggttggtt tcgccgatgt ccgtgacctg ttgtggttgg 3721 aagatgatgc aatggaacag ggagtgaaag attacgttga gcaacttggt aatgcttttg 3781 gctcaggatt caccaaccag atatgcgagc aggttaacct cctaaaagaa tcactagtag 3841 gtcaggactc aatcttggag aagtcactca aagccctagt taagatcatc tctgccctgg 3901 tgattgtagt aaggaatcat gatgacctga tcacagttac agctacactc gcccttattg 3961 gctgcacctc gtctccgtgg cgatggctta agcacaaggt gtcccaatat tacggaatac 4021 ccatggctga acggcagaac aacgggtggc taaagaaatt tacagagatg actaacgcat 4081 gcaaagggat ggagtggata gccgtcaaga ttcagaaatt tatagaatgg ctcaaggtta 4141 agattttgcc agaagtcaag gaaaagcatg aattcctaag tagactcaaa cagctcccac 4201 tcttggagag tcagattgcc accattgaac aaagtgcacc ctctcaaagt gaccaggaac 4261 agctgttctc aaatgtccag tacttcgctc actattgcag aaagtacgca ccgctctacg 4321 ctgcagaagc caagagggtg ttttcccttg aaaaaaaaat gagcaattac atacagttca 4381 agtccaaatg ccgtattgaa cctgtatgct tgcttttgca tggtagccca ggagcgggga 4441 agtcagttgc taccaactta attgggcggt cattagctga aaagttaaac agttcagtgt 4501 actccttacc accagaccca gaccatttcg atggctacaa acaacaagcc gtcgtaatta 4561 tggacgatct atgccaaaac ccggatggca aggacgtgtc tttgttctgc caaatggtgt 4621 ctagtgtaga ctttgtacca ccaatggctg cactggagga aaaaggtatc ttgttcacct 4681 ccccttttgt cctggcctca accaatgctg ggtccatcaa cgcgccgaca gtctcagaca 4741 gccgggctct ggcaagaagg ttccattttg acatgaatat tgaagttatc tccatgtaca 4801 gccagaatgg caagatcaac atgcccatgt cagtcaagac gtgtgatgaa gagtgttgcc 4861 cagtcaattt caagagatgc tgccctctag tgtgtggaaa ggctatccag tttatcgata 4921 gaaagactca agtgaggtac tccctagata tgctagtcac ggagatgttt agggaataca 4981 accacaggca cagtgtcggg gcgacccttg aggcgctatt ccaaggcccg ccagtgtaca 5041 gagaaattaa aattagtgtc acacctgaaa ccccaccacc accagtaatc gcagacttgt 5101 tgaagtcagt ggacaggcag gctattagag agtactgtaa ggagaaggga tggctagttc 5161 ctgagatcga ttctattctc caaattgaga agcatgtcag tagagcattt atctgcctcc 5221 aagcactgac aactttcgtg tctgtggccg gaattattta tatcatttac aaactgtttg 5281 cagggttcca gggtgcatat acggggatgc ctaaccaaaa acctaaagtg cctacactaa 5341 ggcaggctaa agtgcagggt cccgcttttg agttcgctgt ggccatgatg aagaggaact 5401 ccagtacggt gaaaacagag tatggcgagt tcaccatgtt aggcatctat gacaggtggg 5461 ctgtcctacc acgccacgct aaacccgggc cgactattct tatgaatgac caggaggtcg 5521 gtgtgctgga tgccaaggaa ttaatagaca gagatggtac aaatctggag ctgacactac 5581 tgaaactcaa ccggaatgag aaattcaggg acatcagagg ttttctagcc aaggaggaag 5641 tggaggttaa tgaagctgtc ctagcaatca acactagcaa atttccaaac atgtacatcc 5701 ccgtaggcag ggtcacagac tatggcttcc taaacctagg tggtactccc acaaagagaa 5761 tgctcatgta caacttccct acaagggctg gacagtgtgg cggtgttctc atgtccactg 5821 gcaaggtgct agggatccac gttggtggga atggtcacca gggtttctca gcaggcctcc 5881 ttaagcacta ctttaatgat gagcaggggg agatcgagtt catcgaaagc tcgaaagatg 5941 caggtttccc agtcatcaat acaccaagta gaactaagct agaaccaagc gtcttccatc 6001 acgtctttga aggaaacaag gaaccagcag tcctcaggaa cggcgacccg cgccttaaag 6061 tcaactttga ggaggctata tttttcaaat acataggaaa cgtcaacaca catgtggacg 6121 agtacatgct agaagctgtg gatcactatg cagggcaatt ggccactctt gacattaaca 6181 ctgagccaat gaaactggaa gatgcagtgt acggcacgga agggctagag gctcttgatt 6241 taacaacaag tgcggggtac ccatatgttg cattaggcat taagaagagg gacatcctat 6301 ccaaaaagac caaagacctg accaaattga aggaatgtat ggacaagtac ggattaaact 6361 tgccgatggt gacatacgtg aaggatgagc ttagatcagc agagaaggtg gccaaaggga 6421 aatctagact cattgaagca tccagcttga acgactctgt tgcgatgagg caaacatttg 6481 gtaatttgta caaggcattc cacttaaacc cggggattgt aacgggcagt gcagtcgggt 6541 gcgatccaga cgttttctgg agtaaaatac ctgtgatgct agacggacac cttatagcct 6601 tcgactactc cggttatgac gccagtctga gccccgtgtg gtttgcttgt ctaaagttgc 6661 tgcttgaaaa actcgggtac acacataaag agacaaacta cattgactac ttatgcaact 6721 cccaccacct atacagagac aaacactact ttgtacgtgg cggtatgccc tcagggtgct 6781 ctggtaccag catcttcaac tcaatgatca ataacatcat tatcaggacc ttaatgttga 6841 aggtgtacaa aggtattgac ttggatcaat tcaggatgat tgcatatggt gatgatgtga 6901 ttgcatcata tccttggccc atagacgcct ctctgctcgc tgaagctggt aaagactacg 6961 ggctaatcat gacaccagcg gataaaggag agtgttttaa cgaagtcacc tggactaatg 7021 tcacctttct aaagaggtat tttagagcag atgaacaata ccctttcttg gttcacccag 7081 tgatgcccat gaaagacatc cacgagtcta tcaggtggac caaagatcca aagaacactc 7141 aagatcatgt gcgctccctg tgcttattgg cttggcacaa tggagagcac gaatatgagg 7201 agttcatcca aaagatcaga agcgtcccag ttgggcgctg cttgactctg cccgcgtttt 7261 cgaccctacg taggaaatgg ttggattcct tttaaattag agacaatttg aaacaattta 7321 aattggctta accctactgc actaaccgaa ctagataacg gtgcagtagg ggtaaattct 7381 ccgcgttcgg tgcgg //