GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS RATRN05 6849 bp ds-DNA ORG 25-MAY-1991
DEFINITION Rat mitochondrial genome fragment from Sprague-Dawley strain
female.
ACCESSION V01574
KEYWORDS ATPase; cytochrome oxidase; mitochondrial DNA; tRNA;
unidentified reading frame.
SOURCE Mitochondrion Rattus norvegicus DNA.
ORGANISM Mitochondrion Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 424 to 6649)
AUTHORS Grosskopf,R. and Feldmann,H.
TITLE Analysis of a DNA segment from rat liver mitochondria containing
the genes for the cytochrome oxidase subunits I, II and III, ATPase
subunit 6, and several tRNA genes
JOURNAL Curr. Genet. 4, 151-158 (1981)
STANDARD full automatic
REFERENCE 2 (bases 1 to 440; 6649 to 6849)
AUTHORS Grosskopf,R. and Feldmann,H.
TITLE tRNA genes in rat liver mitochondrial DNA
JOURNAL Curr. Genet. 4, 191-196 (1981)
STANDARD full automatic
COMMENT SWISS-PROT; P00406; COX2$RAT. SWISS-PROT; P05503; COX1$RAT.
SWISS-PROT; P05504; ATP6$RAT. SWISS-PROT; P05505; COX3$RAT.
SWISS-PROT; P05506; NUO3$RAT. SWISS-PROT; P05507; NUOL$RAT.
SWISS-PROT; P05508; NUO4$RAT.
The sequenced segment comprises map positions 31.7 to 74.3 (using
the beginning of the D-loop as a reference point for 0/100). Data
submitted (17-JAN-1984) on tape to the EMBL data library by H.G.
Zachau and P.S. Neumaier.
From EMBL entry MIRN05; dated 06-DEC-1983.
FEATURES Location/Qualifiers
tRNA 55..120
/note="tRNA Trp"
tRNA complement(122..190)
/note="tRNA Ala"
tRNA complement(193..264)
/note="tRNA Asn"
tRNA complement(296..364)
/note="tRNA Cys"
tRNA complement(367..432)
/note="tRNA Tyr"
CDS 434..1978
/note="cytochrome oxidase subunit I"
/codon_start=434
tRNA complement(1975..2045)
/note="tRNA Ser (UCN)"
tRNA 2047..2115
/note="tRNA Asp"
CDS 2117..2800
/note="cytochrome oxidase subunit II"
/codon_start=2117
tRNA 2804..2867
/note="tRNA Lys"
CDS 2869..3075
/note="unidentified reading frame A6L"
/codon_start=2869
CDS 3030..3710
/note="ATPase subunit 6"
/codon_start=3030
CDS 3710..4492
/note="cytochrome oxidase subunit III"
/codon_start=3710
tRNA 4493..4561
/note="tRNA Gly"
CDS 4562..4909
/note="unidentified reading frame 3"
/codon_start=4562
tRNA 4911..4978
/note="tRNA Arg"
CDS 4981..5277
/note="unidentified reading frame 4L"
/codon_start=4981
CDS 5271..6648
/note="unidentified reading frame 4"
/codon_start=5271
tRNA 6649..6716
/note="tRNA His"
tRNA 6717..6776
/note="tRNA Ser (AGY)"
tRNA 6776..6846
/note="tRNA Leu (CUN)"
BASE COUNT 2223 a 1781 c 861 g 1984 t
ORIGIN
1 ccctcacagt attaagtacc cttaccctac cgctttcctc ccaactaatc acatagaagt
61 ttaggatata cagttcaaga gccttcaaag cccttagaaa acaaacaagt ttaacttctg
121 ataaggactg taagactata tcttacatct gttaaatgca aatcaactgc tttaattaag
181 ctaaatcctc aactagattg gaaggattca aacctacgaa aatttagtta acaactaaat
241 accctactta ctggcttcaa tctacttctc ccgcctatca gaaaagaggc gggagaagcc
301 ttagtagagg agattctcta caccttccaa tttgcaattc gacatgataa tcaccttaag
361 gctttttggt aaaaaggggg ctcaacccct gtctttagat ttacagtcta atgcttactc
421 agccatttta cctatgttcg taaacggttg actcttttca actaacccta aagatatcgg
481 aaccctctac ctattatttg gagcctgagc aggaatagta gggacagctt taagtattct
541 aattcgagct gaactaggac agctaggcgc actcctagga gatgaccaaa tctataatgt
601 cctcgtcaca gcccatgcat tcgtaataat tttctttata gtaataccta taataattgg
661 aggcttcgga aactgacttg taccactaat aattggagcc cctgatatag cattcccacg
721 aataaataac ataagctttt gactgcttcc tccatcattt ctactccttt tagcatcctc
781 catagtagaa gctggagctg gaacaggatg aacagtatat ccccccttag ccggaaacct
841 agcccatgct ggggtatccg tagatttaac tattttttcc ctccacctag ccggggtgtc
901 ttctatctta ggagctatca actttatcac cactatcatt aatataaaac cccctgctat
961 aacccaatat cagacacctc tctttgtatg atccgtacta attacagccg tcctactact
1021 tctctcactg ccagtattag cagcaggtat cactatactc cttacagacc gaaatctaaa
1081 tactactttc ttcgaccccg ctggaggcgg aggcccaatt ctttatcaac acctattctg
1141 attcttcggc cacccagaag tgtacatctt aattcttcta gggtttgaaa ttatttcaca
1201 tgtagttacc tattactctg gaaaaaaaga acccttcgga tatataggta tggtatgaac
1261 cataatatct attggcttcc taggatttat tgtatgagca catcacatat tcactgtagg
1321 cctggatgta gacacccgag cctactttac atctgccact ataattatcg caattcctac
1381 aggcgtaaaa gtattcagct gactcgctac actacatgga ggaaatatca aatgatcccc
1441 cgccatatta tgagccttag ggtttatctt cttattcaca gtagggggcc taacagggat
1501 cgtactatct aactcatccc ttgacattgt acttcatgat acatactacg tagtagctca
1561 cttccactat gtcttatcta taggagcagt attcgccatc atagcttgct tcgtccactg
1621 attcccacta ttctcaggct ataccctaaa tgacacatga gcaaaagccc tctttgccat
1681 tatatttgta ggtgtaaaca taacattttt tcctcaacac ttcctaggat tagcagggat
1741 acctcgtcgt tactctgatt atccagatgc ttataccaca tgaaatacag tctcctctat
1801 aggctcattc atctcactta cggccgtcct tgtaatgatc ttcatgattt gagaagcctt
1861 cgcatcaaaa cgagaagtgc tctcaatttc ctactcttca actaacctag aatgactgca
1921 tggatgcccc ccaccttacc acacattcga agaaccttcc tatgtaaaag ttaaataaga
1981 aaggaaggat tcgaaccccc tacaactggt ttcaagccaa tttcataacc attatgtctt
2041 tctcaatgag atattagtaa aataattaca taaccttgtc aaggttaagt tatagactta
2101 aatctatata tcttacatgg cttacccatt tcaacttggc ttacaagacg ccacatcacc
2161 aatcatagaa gaacttacaa actttcatga ccacacccta ataattgtat tcctcatcag
2221 ctccctagta ctttatatta tttcactaat actaacaaca aaactaacac acacaagcac
2281 aatagacgcc caagaagtag aaacaatttg aacaattctc ccagctgtca ttcttattct
2341 aatcgccctt ccctccctac gaattctata cataatagac gagattaata acccagttct
2401 aacagtaaaa actataggac accaatgata ctgaagctat gaatatactg actatgaaga
2461 cctatgcttt gactcctaca taatcccaac caatgaccta aaactaggtg aacttcgctt
2521 attagaagtt gataatcggg tagtcttacc aatagaactt ccaattcgta tactaatctc
2581 atccgaagac gtcctgcact catgacccat cccttcacta gggttaaaaa ccgacgcaat
2641 ccccggccgc ctaaaccaag ctacagtcac atcaaaccga ctaggtctat tctatggcca
2701 atgctctgaa atttgcggct caaatcacag cttcatactc attgtactag aaatagtgcc
2761 tctaaaatat ttcgaaaact gatcagcttc tataatttaa actcattgcg aagcttagag
2821 cgttaacctt ttaagttaaa gttagagaca acaaatctcc acattgacat gccacaacta
2881 gacacatcca catgatttat tacaatcatc tcctcaatag ccacactatt taatttattt
2941 caattaaaaa tttcttccca aacctttcct gcacctccct cacccaaaac tatagccaca
3001 gaaaaaacga ataacccttg agaatcaaaa tgaacgaaaa tctatttccc tctttcatta
3061 cccccacaat aataggtcta ccaattgttg tgaccattat tatgttccca tcaattctat
3121 tcccatcatc agaacgccta atcagcaacc gactacactc atttcaacac tgactaatca
3181 aacttatcat caaacaaata atgttaattc acacaccaaa aggacgaacc tgagccctaa
3241 taattgtatc cctaattata tttatcggct caaccaacct tctagggctt cttccccata
3301 catttacccc taccactcag ctatctataa acctaagcat agccatcccc ctatgagcag
3361 gagccgtaat tctaggcttc cgacacaaac taaaaaattc tttagcccac ttcttaccgc
3421 aaggaacccc catctcacta attcccatac taatcatcat cgaaactatc agcctattta
3481 ttcaaccgat agcactagca gtacgactaa cagcaaacat tacagcaggc catctattaa
3541 tgcatctaat cggaggagct accctagtac ttatagacat cagcccacca accgctacaa
3601 ttacatttat tattctactt ctacttacag tacttgaatt tgtcgtagcc ttaattcaag
3661 cctatgtatt cacccttcta gtaagcctgt acctacatga taacacataa tgacccacca
3721 aacccatgca taccatatag taaacccaag cccatgacca ctaacaggag ccctatcagc
3781 tcttctactc acatccggct tagtaatatg attccattac aactccacaa ttctcctatc
3841 attaggcctc ctgacaaaca tcctaactat atatcaatga tgacgagata tcatccgtga
3901 aggaacatac caaggccacc acacccctat tgtacaaaaa ggcctccgat acggaataat
3961 cctgtttatt gtctccgaag tattcttctt tgccggattt ttctgagcat tttatcattc
4021 cagcctagtt cctacccacg acctaggcgg ttgctgaccc ccaacaggaa tcaccccttt
4081 aaatccccta gaagtacccc ttctaaatac atcagtcctc ttagcatcag gagtctcaat
4141 tacatgagcc catcacagcc taatagaagg caaccgaaac catataaacc aagccctact
4201 aatcaccatt ctcttaggat tatatttcac tatcttacaa gcctcagagt atttcgaaac
4261 atcattttct atctcagacg gaatttacgg ctcaacattc ttcatagcaa cgggatttca
4321 tggccttcac gtaattattg gctcaacttt cctaattgtc tgtctactac gacaactaaa
4381 attccacttc acatcaaaac atcatttcgg atttgaagcc gcagcatgat actgacactt
4441 cgtagatgta gtttgactat tcctatacgt ttctatctat tgatgaggat cctactccct
4501 tagtataaac aatacaactg acttccaatc agttaattct gaaaaaactc agaagagagt
4561 aattaaccta cccattatca tcacaattaa catcacctta tcttttatcc tcatttcaat
4621 tgcattctga ttgcctcaaa taaacttata ctccgaaaaa gcaaacccat atgaatgtgg
4681 cttcgaccca acaagttctg cacgccttcc tttttcaata aaatttttct tagtagccat
4741 tacatttcta ctattcgacc tagaaatcgc cttactactt cccctcccat gagcgattca
4801 aacaaccaat accgctacaa taatagcaac tgcctttatt ttagtcacta ttttagctct
4861 tggcctaagc tacgaatgaa cacaaaaagg actagaatga acagaataat tggtaattag
4921 tttaaataaa attaatgatt tcgactcatt agattatgat aataatcata attaccaaca
4981 atgacatctg ctttcctaaa tttaactata gcctttacat tatctctact aggtactttt
5041 atatttcgct cccacttaat atctactctc ctctgcctag aaggaataat actatcacta
5101 tttgtcataa cttcaacatc cacattaaac tccaactcca taatctccat aaccatccca
5161 attaccattc tagtttttgc agcctgcgaa gtagcagtag gtttagcctt actagtaaaa
5221 atttcaaata cccacggaac agactacgta caaaacctca accttctaca atgttaaaaa
5281 tcattttccc atctatcata ctcctcccac taacatgact ctcagccaac aaaaaaatct
5341 gaaccaatgt cacctcctac agctttctag tgagcctatt aagcttatca ctcctatgac
5401 aaaatgacga aaattaccta aatttctcag ttatattctc ctccgatcca ttatccaccc
5461 cactaatcat tctaacaact tgactcctcc cactaataat gctcgctagc caaaatcaca
5521 taaaaaaaga aaatataatg catcaaaaac tttacatctc aatacttatt agcctccaaa
5581 ttttactcat cataacattc tccgcaacag aactaatttt attttatatc ctgttcgaag
5641 ccactctaat cccaacacta attatcatta cacgatgagg caaccaaaca gaacgcttaa
5701 atgcaggaat ttatttcctg ttttatacac taattggctc catcccactc ttaattgccc
5761 tcatttcaat ccaaaactca ataggaacac tcaacttcct aatcctctcc ctcacaacac
5821 accccctacc ctcaacatga tccaacacca ttctatgact agcatgtata atagcattta
5881 taatcaaaat accattatac ggagtccatc tatgattacc aaaagcccac gtagaagctc
5941 caattgcagg ctctataatt ttagcagcaa ttctcctaaa gctagggggt tatgggataa
6001 tacgagtttc catcattcta gaccccctaa caaaatcttt agcctaccca ttcatcatcc
6061 tctcattatg aggcataatt ataactagct cggtctgcct acgccaaaca gatctaaaat
6121 cattaattgc ttactcatca gtaagccata tagccctagt catcacagcc attataatcc
6181 agacaccatg aagcttcatg ggagctacaa tactaataat cgcccacggc ttaacctcat
6241 cactcttatt ctgcctagca aacaccaact acgaacgaat tcacagccga actataatta
6301 tagctcgagg attacaaata atcttttcat tgatagcaac atgatgatta ttagcaagct
6361 tatccaacct agcactacca cccctaatta acctcatagg cgagttattc attgttatag
6421 caacattttc ctgatcgaac ccctctatca tccttatagc aactaacatt gtcactacag
6481 gaatatactc aatatatatg attatcacaa cccaacgagg aaaactaacc agccacataa
6541 acaacctcca accttcccac acacgagaat taacactcat agctctacac attattcccc
6601 tcatactatt aacaatcaac cctaaactca tcacaggcct aacaatatgt agatatagtt
6661 tacaaaaaac attagactgt gaatctaaca acaggaaatc aaattcctta tttaccaaga
6721 aagtatgcaa gaactgctaa ttcatgcacc catacctaaa acatatggct ttcttacttt
6781 tataggatag aagtaatcca ttggtcttag gaaccaaaaa ccttggtgca actccaaata
6841 aaagtaata
//GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS RATRN06 1760 bp ds-DNA ORG 25-MAY-1991
DEFINITION Rat mitochondrial genome fragment from Sprague-Dawley strain
female.
ACCESSION V01556
KEYWORDS cytochrome b; mitochondrial DNA; transfer RNA.
SOURCE Mitochondrion Rattus norvegicus DNA.
ORGANISM Mitochondrion Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 1760)
AUTHORS Goertz,G. and Feldmann,H.
TITLE Nucleotide sequence of the cytochrome b gene and adjacent regions
from rat liver mitochondrial DNA
JOURNAL Curr. Genet. 5, 221-225 (1982)
STANDARD full automatic
COMMENT SWISS-PROT; P00159; CYB$RAT.
The sequence comprises the map positions 85.8 to 96.6 (using the
beginning of the D-loop as a reference point for 0/100). Data
submitted (17-JAN-1984) on tape to the EMBL data library by H.G.
Zachau and P.S. Neumaier.
From EMBL entry MIRN06; dated 06-DEC-1983.
FEATURES Location/Qualifiers
CDS complement(<1..237)
/note="unidentified reading frame 6"
/codon_start=237
tRNA complement(238..306)
/note="tRNA Glu"
CDS 312..1454
/note="cytochrome b apoprotein"
/codon_start=312
tRNA 1456..1523
/note="tRNA Thr"
tRNA complement(1525..1592)
/note="tRNA Pro"
BASE COUNT 597 a 493 c 207 g 463 t
ORIGIN
1 cgggtactcc tcagtagcca tagcagttgt atacccaaat acaaccaaca tcccacccaa
61 ataaattaaa aatactatta aacctaaaaa cgaaccccca aaccctaaaa ctattaagca
121 cccaatacat ccactaacaa tcaatccaaa cccaccataa ataggtgaag gcttcaacgc
181 caaccctaag caaccagtca aaaacagtaa acttaaaata aacatataat ttagcattat
241 ttctacacgg catttaactg tgactaatga catgaaaaat catcgttgta attcaactat
301 agaaacatct aatgacaaac atccgaaaat ctcaccccct attcaaaatc atcaaccact
361 cctttatcga cctccccgcc ccatctaaca tctcatcatg atgaaacttc ggttctctac
421 taggagtatg cctcatagta caaatcctca caggcttatt cctagcaata cactacacgt
481 ctgataccat aacagcattc tcatcagtca cccacatctg ccgagacgta aactacggct
541 gactaatccg atacctacac gccaacggcg cctcaatatt tttcatctgc ctattcctcc
601 atgtgggacg aggactatac tatggatcct acactttcct agaaacctga aacattggga
661 tcatcctact atttgcagtc atagcaactg cattcatggg ctatgtactc ccatgaggac
721 aaatatcatt ctgaggagct acagtaatta caaacctatt atcagctatc ccttacattg
781 ggactaccct agtcgaatga ctctgaggag gcttctcagt agacaaagca accctaacac
841 gcttcttcgc attccacttc atcctcccat tcattatcgc cgcccttgca attgtacatc
901 ttcttttcct ccacgaaaca ggatcaaata accccacagg attaaactcc gacgcagaca
961 aaatcccatt ccatccatat tatacaatta aagacctcct aggtgtattt atattactat
1021 tattcctaat aaccctagta ctattcttcc cagacctact aggagaccca gacaattata
1081 cacccgctaa ccccctcaac accccacccc acatcaaacc agaatgatat tttctctttg
1141 cctacgctat tttacgttcc attcccaaca aactaggagg ggtcgtagcc ctaatcttat
1201 caatcctaat cttagccttc ctaccattcc tgcatacctc aaaacaacgc agcttaacat
1261 tccgcccaat cacccaaatc ctttactgaa tcctagtagc caacctccta gtcttaacat
1321 gaatcggagg ccaaccagta gaacacccat ttatcattat tggtcaacta gcctccatca
1381 gctatttttc aattatcctc attctcatac caatctctgg aattgttgaa gacaaaatgt
1441 taaaatgaaa ttaatgtccc gatagtataa aaattactct ggtcttgtaa accaaaaatg
1501 aagagtcagc tcttctcggg acaatcaaga agaaggaact acctccccac caccaacacc
1561 caaagctgat attctactta aactacttct tgtcagtaca taaaatgata taggacatta
1621 aaacatctat gcatatcgca cattaaatta ttttccccaa gcacataagc atgtaatata
1681 tatccaacga tttaggacat acatttaaac ccaaccataa attcacaaca acatgtcatt
1741 ccaaatacat taaagtaatg
//