GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS ATHRPII 9235 bp ds-DNA PLN 25-MAY-1991
DEFINITION Arabidopsis thaliana rpII gene for RNA polymerase large subunit (EC
2.7.7.6)
ACCESSION X52954
KEYWORDS RNA polymerase; RNA polymerase II; polymerase; rpII gene.
SOURCE Arabidopsis thaliana DNA.
ORGANISM Arabidopsis thaliana
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
Dilleniidae; Capparales; Brassicaceae.
REFERENCE 1 (bases 1 to 9235)
AUTHORS Nawrath,C.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 9235)
AUTHORS Nawrath,C., Schell,J. and Koncz,C.
TITLE Homologous domains of the largest subunit of eukaryotic RNA
polymerase II are conserved in plants
JOURNAL Mol. Gen. Genet. 223, 65-75 (1990)
STANDARD full automatic
COMMENT *source: strain=Columbus; library=EMBL4, lambda gt11;
Data kindly reviewed (25-OCT-1990) by Nawrath C.
From EMBL entry ATRPII; dated 19-NOV-1990.
FEATURES Location/Qualifiers
mRNA <1101..1100
/note="exon 1"
CDS 1017..1100
/note="RNA polymerase II large subunit (AA 1-28)"
/codon_start=1017
intron 1101..1290
/note="intron I"
mRNA 1291..1575
/note="exon 2"
CDS 1291..1575
/note="RNA polymerase II large subunit (AA 29-123)"
/codon_start=1291
intron 1576..1663
/note="intron II"
mRNA 1664..1948
/note="exon 3"
CDS 1664..1948
/note="RNA polymerase II large subunit (AA 124-218)"
/codon_start=1664
intron 1949..2025
/note="intron III"
mRNA 2026..2184
/note="exon 4"
CDS 2026..2184
/note="RNA polymerase II large subunit (AA 219-271)"
/codon_start=2026
intron 2185..2269
/note="intron IV"
mRNA 2270..2431
/note="exon 5"
CDS 2270..2431
/note="RNA polymerase II large subunit (AA 272-325)"
/codon_start=2270
intron 2432..2513
/note="intron V"
mRNA 2514..2769
/note="exon 6"
CDS 2514..2769
/note="RNA polymerase II large subunit (AA 326-410) (2769
is 1st base in codon)"
/codon_start=2514
intron 2770..2861
/note="intron VI"
mRNA 2862..2950
/note="exon 7"
CDS 2862..2950
/note="RNA polymerase II large subunit (AA 411-440) (2862
is 2nd base in codon)"
/codon_start=2862
intron 2951..3035
/note="intron VII"
mRNA 3036..3371
/note="exon 8"
CDS 3036..3371
/note="RNA polymerase II large subunit (AA 441-552)"
/codon_start=3036
intron 3372..3465
/note="intron VIII"
mRNA 3466..3752
/note="exon 9"
CDS 3466..3752
/note="RNA polymerase II large subunit (AA 553-648) (3752
is 2nd base in codon)"
/codon_start=3466
intron 3753..3928
/note="intron IX"
mRNA 3929..4187
/note="exon 10"
CDS 3929..4187
/note="RNA polymerase II large subunit (AA 649-734) (3929
is 3rd base in codon)"
/codon_start=3929
intron 4188..4272
/note="intron X"
mRNA 4273..7355
/note="exon 11"
CDS 4273..7355
/note="RNA polymerase II large subunit (AA 735-1762) (7355
is 2nd base in codon)"
/codon_start=4273
intron 7356..7466
/note="intron XI"
mRNA 7467..7538
/note="exon 12"
CDS 7467..7538
/note="RNA polymerase II large subunit (AA 1763-1786)
(7467 is 3rd base in codon) (7538 is 2nd base in codon)"
/codon_start=7467
intron 7539..7645
/note="intron XII"
mRNA 7646..7846
/note="exon 13"
CDS 7646..7811
/note="RNA polymerase II large subunit (AA 1787-1841)
(7646 is 3rd base in codon)"
/codon_start=7646
intron 7847..7934
/note="intron XIII"
mRNA 7935..8251
/note="exon 14"
BASE COUNT 2597 a 1839 c 1951 g 2848 t
ORIGIN
1 tctagatagt ttgaagaatc ctattgagcg atcttaatca aaagaacaaa agaagttata
61 acgaaaacat gcatttgaag ataaaagcta taaagtataa ataattttct ttcttttttc
121 gttgttttgt ttttgtatca gcgtgtgtgt tatatacata acaaagtggg cttcacataa
181 cttgagacta tgcctccgta cgtgtaatat ttatttgtta gttttccgta ttataataat
241 gggttcaccc tactttgcta gagtagaaga ataatttcat tttattaact cccaactcat
301 tcattactca cttttgggat attgaagaag ttaggtattt actattccga agatgaaatg
361 aagataatta atcgtttcaa tctaaattac acattagatt tcttttagcg tagggactcc
421 tcttccttta gagcttcggc cactagcagt taaaacttta atggttcaga tttttcagtc
481 cactttacca aacatggtga aataagggga actattatcg ttttgctctt ttaagaagaa
541 atctatttga cggaaaataa gaagaaatct tatttttgat atatcggttt gaccaactga
601 accgatataa accaatctta ctagcattct tcgttacaac acgtttcttt ggtcagtgcc
661 gacgcaggcc cgttaatccg tttaactggg cctgagacag ttacagccca attaaccaga
721 acagaccttt gagccgccta tttttctata aatagaggct tagggcatgg atcgtgtttc
781 ttttgctcat tcatctctcc tcgtgaagag acgagagaat tccagatctg gtcgtgtcaa
841 aacccagaga gggaaaaaaa aaacggaaaa aagtttagct caagtaactg taaactactg
901 actcacagat tcaaacaaat tggcaaaaga gggtttaatt aatttttgat tcccctttta
961 attcacgttc tagggttttc gatttttgat tcgtctttga tcggagctta gccgccatgg
1021 atacgaggtt tccgttctct ccggccgagg tctctaaagt ccgggtggtc cagtttggca
1081 tactcagccc cgatgagatc gtaatgctcc tttctctttc tctttctctt tcaggtccat
1141 tcgtccgccg tctgtttagc tggcggggat attggcatga atagtagatt ggtttagtta
1201 gggagcatgt tcttttctat ctattgatct taattggaag cttcaagtaa gaaattgagt
1261 ttcactggtt gctaatggct tttttttcag aggcaaatgt ctgttataca tgttgagcat
1321 agtgagacga ccgagaaggg taaacctaag gtgggaggat tgagtgatac ccgtcttggt
1381 acgattgatc ggaaggtgaa gtgtgagaca tgtatggcta atatggctga gtgtccggga
1441 cattttggct atcttgagct cgctaagcca atgtatcatg tcggttttat gaagacagtg
1501 ttaagtatca tgagatgtgt ctgtttcaat tgctccaaga ttttagctga tgaggtatgt
1561 aggagcttat ttcgtgtcag cattgcttgt tttgcttatg tctttgtttg acgtagctgt
1621 tcttcaattg attattttta tgaaggagga gcataagttt aagcaggcta tgaagatcaa
1681 gaatcctaag aataggctta agaagattct ggatgcctgc aaaaacaaga ccaaatgtga
1741 tggtggtgat gacattgacg atgtccaaag ccacagcacg gatgaaccag taaaaaagag
1801 ccgaggtgga tgtggtgcac aacaaccaaa actgactatt gagggtatga agatgattgc
1861 agaatacaaa attcaaagga agaaaaatga tgagccagat cagcttcccg agcctgcaga
1921 aaggaaacag acacttggtg ctgatagggt tcgtcttttc tttcgaatga attttacctc
1981 ttgttcttgt ttggcgtaat ctgatggcat gtgatattct tgcaggtttt gagtgttttg
2041 aaaaggatta gtgacgcgga ttgtcaactc ctaggtttca accctaagtt tgctcgtcct
2101 gactggatga ttcttgaagt ccttcctatt cctccacccc ctgtcagacc atctgtaatg
2161 atggacgcca cttccaggag tgaggtaagt cgactacggt tttctgaata aaacttttct
2221 tagaccaaca tagtgtgtgc ccctgagttt atgcttattg ttgatgcagg atgacttgac
2281 ccatcagcta gctatgatta ttcgacacaa tgaaaacttg aaaaggcagg aaaaaaatgg
2341 agcgccagct catattatat cagagtttac acaactcttg cagtttcata tagctacgta
2401 ttttgataac gagttgcctg gacagccaag ggtaatgctt ttgtatcctt ccagatatct
2461 ggtatgatac atacggatat tgctttatct ggattggctt ttattttctt caggctactc
2521 agaaatcagg gaggcctatt aaatcaatat gtagtaggct gaaggcaaag gaaggcagaa
2581 tcaggggtaa cttgatggga aaacgtgttg atttctcggc acgtactgtt attactccag
2641 atccaacaat aaatattgat gaacttggtg ttccgtggag tattgctctg aatctcacat
2701 acccagaaac agttactccc tataacattg aaaggttagt acgtctggtg tttatttcat
2761 tttctgagag taatttttcc gtgttttact aacaatttag tttggcagat taaaggagct
2821 tgttgattat ggaccacatc ctccacctgg gaagactgga gcgaaatata tcataagaga
2881 tgatggccaa agatcagatc ttcggtatct taagaagagc agtgatcaac atttggaact
2941 tggatacaag gtatgtacta ctttcttatt ctatccactc aacgcacaaa aggttatttc
3001 tggaagtcgt catttttatg ctttcttggt cacaggtgga gcggcattta caggatggtg
3061 attttgttct gtttaatcgt caaccaagtc tgcacaaaat gtctatcatg ggtcacagga
3121 ttaggattat gccatattcc actttccgtc tgaatttgtc tgtcacgtct ccgtacaatg
3181 ctgattttga tggggatgag atgaacatgc atgtaccaca atcattcgag accagagccg
3241 aggtgttaga gctgatgatg gttcctaaat gtattgtctc cccccaggcg aatcgtcctg
3301 tgatgggaat tgtgcaggat accctcttgg ggtgccgtaa aattacaaag agagatactt
3361 tcatagagaa ggtagcaatt tcatcagcgg ttgcttttta aagttatcta tgatattgat
3421 gagaggataa accaactctt atgctgatat cttatccatt ttcaggatgt attcatgaac
3481 acactgatgt ggtgggaaga cttcgatggg aaagttccgg ctcctgcaat cttgaagcct
3541 cgtcctcttt ggactggcaa acaagttttt aatcttatca taccaaaaca gataaatctg
3601 ttgaggtact ctgcttggca cgcagataca gagactggat ttataactcc gggggatact
3661 caagtgcgaa ttgaaagagg ggaacttctt gccggaactc tttgcaaaaa gacccttggt
3721 acatctaatg gaagtctcgt gcatgtcatt tggtaagttg cacatcaaga ttttagagtg
3781 tttattccgg tttgtcacat ttgcttactg gctaaatttt ggtaccttag ttaacttcac
3841 atcacatgca gcattgttgg gaatatctaa atgtagtaat tagtttcatg agctcttttg
3901 ttttaattca tttttacttg gcttccaggg aagaggttgg tcctgatgca gctagaaaat
3961 tcctcggtca tactcaatgg cttgtcaatt actggcttct gcagaatggt tttaccatcg
4021 gaattggtga cacaattgcc gattcatcaa caatggagaa aattaatgaa actatttcca
4081 atgcaaaaac tgctgtgaaa gatcttatcc ggcagttcca gggaaaggaa ttggaccctg
4141 agcctggccg aactatgaga gatacatttg agaacagggt tgaccaggta tattcaagac
4201 aataattagt tgattttcgt ttggttgtca gtgcagtttt tatatgtgct gactcataaa
4261 ctttccttgt aggttttgaa taaagctcgt gatgatgctg gaagtagtgc tcaaaagagt
4321 ttagcagaaa ccaataacct taaggccatg gtgacagcag gatccaaagg aagtttcatc
4381 aatatttctc aaatgacagc gtgtgtcggt cagcaaaatg ttgaagggaa gcgaattcca
4441 tttggatttg atgggcggac attgccacat ttcaccaaag atgattatgg tcctgaaagt
4501 cgtggttttg ttgagaattc gtacctgcgt ggcttgactc ctcaagagtt ctttttccat
4561 gctatgggag gacgagaagg tcttattgat actgctgtga agacatcaga aactggatac
4621 attcagaggc gattggtaaa ggctatggag gatattatgg ttaagtatga tgggacagtc
4681 agaaactctt tgggtgatgt tattcaattt ctctatggag aagatggtat ggatgctgta
4741 tggatagaat cacagaagct ggattccttg aaaatgaaga aatcagagtt tgataggact
4801 tttaagtatg agattgacga cgaaaactgg aatcctactt acctaagtga tgaacatctt
4861 gaagacttga aggggattcg ggagttgcgt gatgtattcg atgcggaata ttcgaaactt
4921 gagactgaca gattccaact cgggacagaa attgcaacaa atggtgatag cacttggcca
4981 ttgcctgtta acatcaagag gcatatctgg aatgcgcaga agactttcaa aattgacttg
5041 cgcaaaattt cagatatgca ccctgttgaa attgttgatg ctgttgataa actacaggag
5101 aggctgttgg ttgttcctgg tgatgatgcg ttgagtgtgg aagcacagaa aaacgcaaca
5161 ttgttcttta acattttgct tcgcagcact cttgctagta aaagagtgtt ggaagaatac
5221 aagctcagcc gcgagcgttt tgagtgggtc attggtgaga ttgaatcaag gtttttacaa
5281 tcgctagtgg ccccagggga aatgatcggt tgtgttgctg ctcaatcaat tggagaacct
5341 gctacgcaga tgactctgaa taccttccat tatgctggtg tcagtgcaaa gaacgttacg
5401 ctcggagttc ccaggttgcg tgaaattatt aatgtagcta agaggatcaa aacaccatcc
5461 ctatcagtct atctcactcc ggaagctagc aaatcaaaag agggggctaa gactgttcag
5521 tgtgctttgg agtatactac tctcaggagt gttactcaag ctacggaagt ctggtatgac
5581 ccagatccaa tgagtacaat aattgaagag gactttgaat ttgtgaggtc ctactatgaa
5641 atgccagatg aagatgtttc cccagataag atatctccgt ggctacttcg tatagagttg
5701 aatcgcgaga tgatggttga taagaaattg agtatggcgg atattgcgga gaagatcaac
5761 cttgagttcg atgatgacct aacttgcata ttcaatgatg ataatgctca aaaactgatc
5821 cttcgaattc gcattatgaa cgatgagggc ccaaagggag agttgcaaga tgaatcggct
5881 gaagatgatg ttttcctcaa aaagattgag agcaacatgc tgacagaaat ggcactcaga
5941 ggtattccag acatcaacaa ggtttttata aaacaggtta gaaagagcag gtttgatgag
6001 gagggaggct tcaagacatc tgaggagtgg atgttggata cagaaggtgt gaacctctta
6061 gctgtcatgt gtcacgaaga tgtggatcca aagaggacaa caagcaatca cttgattgaa
6121 attattgaag ttctcggaat tgaggcagtt cgtcgtgctt tgcttgatga actccgtgtt
6181 gtgatatcct ttgatggttc ttatgtgaat taccgtcatc ttgccatctt gtgtgatact
6241 atgacctatc gcggtcatct gatggctatc actcgacacg gtatcaatag aaatgacact
6301 gggcctctga tgagatgctc ttttgaagaa acagttgata ttctgctaga tgctgcggct
6361 tatgctgaga cagactgctt acggggtgtt actgagaata taatgttggg tcaacttgca
6421 ccaattggga caggagattg tgagttgtat ctgaatgatg agatgctgaa gaatgcaatt
6481 gaacttcagc tccctagcta tatggatggt cttgaatttg gaatgactcc tgctcgttca
6541 ccagtgtcag gcactcctta ccatgaaggc atgatgtctc caaactacct gttaagtcca
6601 aatatgcgtt tatccccaat gtcagatgca cagttttctc catatgttgg tggaatggcc
6661 ttttcgcctt cttcttctcc aggatatagt ccatcatcgc ctggatacag tcctacttct
6721 cccggttaca gtccaacttc gcctggatat agcccgactt ctcccggtta cagtccaact
6781 tcgcctacct acagtcccag ttctcctggc tatagcccaa caagccctgc ttattctcct
6841 acaagtcctt cctattctcc tacctctccg agctacagcc caacgtctcc aagctatagc
6901 ccaacgtcgc caagctacag cccgacatct ccgagctaca gtcctacttc cccaagttac
6961 agcccgactt cgcctgctta cagcccgact tcacctgctt acagcccaac ttcaccagca
7021 tacagcccaa cctctccttc ttacagccca acttcacctt cttacagccc aacatcgcct
7081 tcttacagcc ctacttcacc atcttacagc ccaacatctc cgtcttacag ccctacttca
7141 cccgcatata gccccacatc tcctggctac agccctactt caccaagtta cagtccaaca
7201 tcaccaagtt acagtccaac atcaccaagc tacggtccta cgtctccaag ctacaaccct
7261 cagtctgcta aatatagccc atctatagct tactctccta gcaatgcaag actatcacca
7321 gctagcccct acagtcctac atctcccaac tacaggtaag tagtaatatc ttaattttta
7381 cactttctat gaagcttctc ttatcttgtg gtgatattgt gtcatcttct ctaatcgtta
7441 actcttatta aaaatttact ctgcagcccg acatctccat catactcacc cacatctcca
7501 tcttattcac cttcaagtcc aacatacagt cccagcaggt ttgactttta cccgcttgaa
7561 aatcttggat ctgtttgtaa tgcatccatc tcaattgaat tccgcaaaaa gtttaactgg
7621 gttgttgtta ttaaatctgt ctcagcccat acagctcagg agcaagccca gactacagcc
7681 caagcgcagg ctactcgcca acacttcccg gttattcacc gtcatcaacg ggtcagtata
7741 ccccacatga gggcgataaa aaggacaaga ctggaaaaaa agatgccagt aaggatgata
7801 aaggcaaccc ttgaaagaga gtgagaattg gcaatccatg ttttaggtaa cgtctaaatc
7861 tcttggaacc attggggttt acaagtctta ctagctcacg aacttagcca cttgggatat
7921 cgtgtaaccc gcaggtcatg atttaagaga cagtgaaagc tgagaaaagg aagggaccgt
7981 ttcaaagtga tcttctgtgg ataactttgt gaacaaggtt ttcttaatag atcctttttt
8041 cgtgagttgt atattattcc aaactgatcc ataaatccat ccaatcctca tcccccaaaa
8101 agaaaatagt ataaacatag aaaaacgaaa acatatcaga ctttgggctt ttcgtatggt
8161 ttagtttttg gctttttgct gtgttgttct atttcagaaa gtaaacatgt gaaacggttc
8221 atttgtaatc catgaaagga ttctttatgt tactgctgtt gcttcattga gtagatacga
8281 atcgagaatg ccttttttcc ttgtttccga caattatcga ttgacgtgtg accactttaa
8341 aagtttaaac agctcgactt tccaatatgg gtttatttct tgttttatcc acaccattaa
8401 agaatggttt ttgggatttt tatttatgtg ataattaatc atttttccaa attttatttt
8461 gtatataata aatgaagcaa atgttggaaa actatccaat ggatgtggtg ggttaatatc
8521 accagattcg catagctggt tttttgactt gtcttcttaa ttatttgtcc agaaaaagag
8581 aagaactctt cacatcatca ttgtcaactt tagcattatt gtattagctt tttatttctt
8641 tacgtctaca aagctattgg tacaacgttc taaaatcaaa ttcgtcatca gtagattttg
8701 taaactaatt aagtaaagtt cagtgattaa agaagctaga tgaagaacgt gtgcaacgac
8761 tcctctgaga tctacacgga ataatgtcgt cagtgagcaa acaactccca tcacgtcgtc
8821 cctccacctg tcctctcttc tccttccttg cttgtctttc tctctcaaat catttcacct
8881 aaaaataata aatatctttc gttttctaaa gaaaaaaaaa cttttcaaat tcatctttgg
8941 tttctgcagg caggcaaaca aacaagccct gttcgttagg gttttcggtt tttgttagct
9001 tttcttcttc ttcttcttcg tttccttcca cctgaattgt tgtaaccatg gcggagaagt
9061 atcgaggcac gttatgcttc tacacggtga cctcgatttg aaaattgtta aggctaggag
9121 gttacctaac atggatatgt tctcagaaca tttgcgccgt ctcttcaccg cctgtaacgc
9181 ctgtgctaga cccaccgata ccgatgatgt cgatcccaga gataaaggcg aattc
//