GenBank-Updates@genbank.bio.net (05/26/91)
LOCUS PEAPHY 6264 bp ds-DNA PLN 26-MAY-1991
DEFINITION Pea phy gene for phytochrome apoprotein
ACCESSION X14077
KEYWORDS phy gene; phytochrome; regulatory protein.
SOURCE Pisum sativum DNA.
ORGANISM Pisum sativum
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
Rosidae; Rosales; Fabaceaea.
REFERENCE 1 (bases 574 to 6264)
AUTHORS Sato,N.
TITLE Nucleotide sequence and expression of the phytochrome gene in Pisum
sativum: Differential regulation by light of multiple transcripts
JOURNAL Plant Mol. Biol. 11, 697-710 (1988)
STANDARD full automatic
REFERENCE 2 (bases 1 to 6264)
AUTHORS Sato,N.
JOURNAL Unpublished (1990)
STANDARD full automatic
COMMENT SWISS-PROT; P15001; PHY$PEA.
*source: strain=cv. Alaska; library=lambda EMBL3 and pUC13;
*source: clone=K2, pK2E1 and pK2E2;
From EMBL entry PSPHY; dated 17-OCT-1990.
FEATURES Location/Qualifiers
promoter 1038..1058
/note="TATA-box (mRNA 3)"
mRNA 1066..1522
/note="exon 1"
misc_feature 1072..1072
/note="transcription start site mRNA 3"
CDS 1093..1218
/note="ORF (AA 1 - 42)"
/codon_start=1093
mRNA 1179..3245
/note="Exon 2"
promoter 1217..1223
/note="TATA-box(mRNA 2)"
misc_feature 1249..1249
/note="transcription start site mRNA 2"
mRNA 1279..1522
/note="Exon 1 (mRNA 2)"
CDS 1408..1452
/note="ORF (AA 1 - 15)"
/codon_start=1408
mRNA 1417..1522
/note="Exon 1 (mRNA 1)"
promoter 1435..1441
/note="TATA-box (mRNA 1)"
misc_feature 1471..1471
/note="transcription start site mRNA 1"
intron 1532..1752
/note="Intron I"
CDS 1764..3819
/note="phytochrome apoprotein (AA 1 - 685) (3819 is 1st
base in codon)"
/codon_start=1764
misc_feature 2730..2732
/note="chromophore-binding site"
intron 3820..3901
/note="Intron II"
mRNA 3902..4718
/note="Exon 3"
CDS 3902..4718
/note="phytochrome apoprotein (AA 686 - 958) (3902 is 2nd
base in codon) (4718 is 2nd base in codon)"
/codon_start=3902
intron 4719..4796
/note="Intron III"
mRNA 4797..5087
/note="Exon 4"
CDS 4797..5087
/note="phytochrome apoprotein (AA 959 - 1055) (4797 is 3rd
base in codon) (5087 is 2nd base in codon)"
/codon_start=4797
intron 5088..5223
/note="Intron IV"
mRNA 5224..>5223
/note="Exon 5"
CDS 5224..5431
/note="phytochrome apoprotein (AA 1056 - 1124) (5224 is
3rd base in codon)"
/codon_start=5224
misc_feature 5558..5571
/note="region of pot. polyA site 1"
misc_feature 5620..5626
/note="pot. polyA signal"
polyA_site 5648..5648
/note="polyA site 2"
misc_feature 5665..5669
/note="pot. polyA signal"
polyA_site 5692..5692
/note="polyA site 3"
BASE COUNT 1833 a 1122 c 1289 g 2020 t
ORIGIN
1 gatatcatat acaaaagtga agattcaaat tcatgacatc cgacttattt atctttaaaa
61 aataaaatct cggccactaa actacttgat aaaaaaattt attatatcta tataattata
121 tttaaaaatg agcgaatagt gataaaattt gtctaaacta ttataaaaat agtaaatatt
181 aattaaaata ttataatttt taattctcaa cttataaata ttaataactt atttattata
241 aatcattttt tactttttat atatattaaa aaatataata attatggtat aaaaatgagt
301 aaaatgtaat ggattatgag aaaatatatt atttaaaaag taaagtgata attgaatatg
361 tgattcttac aaaatatgac taaccaataa aataagaaga aaccttagag gataggtaac
421 caagtaaata taatatagta taaatctggt aacactaaca agtgtttccc tgtgagtcag
481 taaggttaca tgacagtggt acgtacgagg catgggctca tttgttaaat acaatttcat
541 tgtcagacat gagctgtgat ctaaaagatg tgaaatcgat agagaaaaac tctccaccaa
601 ttaaaatcaa acaatacgat gacatggcat cactatcatt cagccgcatc acgtaaaaac
661 tttccgcatc cctcgcacgt gacacccata actcactact ttcccattat ccaacgcatg
721 cctcttggac actcgtccaa tcaagttcct ccacctcacc cctttttttc cccaccccta
781 ttctatactt agcatgttta attattgaat taggattcaa taattatcca tttattaaat
841 taaattaaaa ttaatagccg acatggaaag tgaagttgaa aaagaaagtc atgttttctc
901 agtaacagtc atgttttctg tttaattatg tgtctgtttt atcattcatc atttaactgt
961 cctttttttc ttatctattt taggaacaaa accaaaccca cttgcccaaa ttagttttat
1021 tttattttat tttaaattat aatatataat aataaataaa cagcaccaac accaagtaga
1081 tgctgttgct gaatgaatct atctaagagt tggattggat tggatgatga tttgattttt
1141 tatttttata atattctttt atttatcttt attcatttca ttcctttctt tctcccacac
1201 cttcacatgg gaacactata aaattcatat atctttatag catatgatgg cggtcccttc
1261 tgttctcagt cacaattctg tgttgaataa taataatact gagcttccag ttgtggacta
1321 agggctccat ctaggtagga gacaaacaag gccggtgatc cagattcacc atcttattta
1381 ctgttgttgc tgctgcaggt gcacggtatg gtatgctggt ctcccactaa tggttatttt
1441 aacccttacc tttaatacct ttctttcttc aacttgtact tgaacttgaa ctttcacaac
1501 agccaagttt ttccctttca aggttagtta gtactatttt gcttcttgtg tttatatttc
1561 atcatgtgtc agggttgttg atttgattgt tttctatgat tgggttttac ttcatagatt
1621 gtgactagtt attttggtaa agcctttgat aattttgtcg tattgatgat agagttcaat
1681 agttttgtaa catcatcgta tatggttttg attgacttgg ttatcttgtt ttttttactg
1741 ttgtaaatgt agtttgtgtt aaaatgtcaa ccacgaggcc tagccaatcg tccaacaatt
1801 cggggaggtc aagaaatagt gctaggatta ttgctcagac gactgtggat gcaaagcttc
1861 atgcaacttt tgaggagtcc ggtagttcgt ttgactactc gagttcggtg cgtgtttctg
1921 gctcggtgga tggagatcaa caaccgaggt ccaacaaagt gacgacggct tacctcaatc
1981 atatacagag aggtaagcag atccagcctt tcgggtgctt gctagcttta gatgagaaaa
2041 cgtgcaaggt tgttgcgtat agtgagaatg cgcctgagat gctgactatg gtgagtcatg
2101 ctgttcctag cgttggtgac catcctgctc ttggcattgg aactgacata aggactgttt
2161 tcactgcgcc gagtgcttct gccttgcaga aggcgctagg gtttgcggag gtttcgcttc
2221 ttaacccgat tcttgttcat tgcaagactt ctgggaagcc gttttacgcg atcattcatc
2281 gtgttactgg tagtttgatc attgactttg agccggtgaa gccttatgaa gttcccatga
2341 ctgctgcggg tgccttgcaa tcttacaaac ttgctgctaa agcaattaca agattgcaat
2401 ctttggctag tggcagcatg gaaaggcttt gtgataccat ggttcaagaa gtttttgaac
2461 taacgggtta tgacagggtg atggcttata aatttcacga ggatgatcac ggggaggtga
2521 ttgctgagat agcaaagcca ggcctagagc catatctagg tctgcactat ccggcgacag
2581 atattcccca ggctgcgcgg tttctattta tgaagaacaa ggtccgtatg atagttgatt
2641 gtaatgcaaa acatgtgaag gttcttcaag acgaaaaact cccatttgat ttgactctgt
2701 gcggttcgac cttgagagct ccacatagtt gccatttgca gtacatggct aacatggatt
2761 caattgcttc gttggttatg gcagttgtcg tcaatgacag cgatgaagat ggagatagcg
2821 ctgacgcagt tctcccacaa aagaaaaaga gactttgggg tttggtagtt tgtcataaca
2881 ctactccaag gtttgttcct tttcctctaa ggtatgcttg tgagtttctg gctcaagtgt
2941 ttgccatcca tgtgaacaaa gaaatagagt tagaatatca gattcttgag aagaatatcc
3001 tgcgcacgca gacgctgttg tgtgatatgt tgatgcgaga tgcaccctta ggtattgtat
3061 cacaaagccc taatataatg gatctagtga aatgtgatgg ggctgcactc ttttatagaa
3121 acaagttatg gttattagga gcgacaccga ctgaatctca attaagagag atagctttat
3181 ggatgtctga gtatcataca gattcaacag gtttgagtac agacagcttg tcggatgcag
3241 ggtttccagg ggctctttct cttagtgata ctgtatgtgg aatggcagct gttagaataa
3301 cttcaaaaga catagttttc tggtttaggt cgcacactgc tgcagaaatc cgatggggtg
3361 gtgcaaagca tgaaccgggc gaccaagacg atggtaggaa gatgcatcca agatcatcat
3421 tcaaggcttt ccttgaagtt gtgaaagcca gaagcgtgcc gtggaaagac tttgaaatgg
3481 atgctattca ttcgttgcag ttaatactga gaaatgcgtc caaagataca gatattatag
3541 atttgaatac gaaggcaatc aatacaagac taaatgattt gaagattgaa ggaatgcagg
3601 aattggaagc agtgacaagt gagatggtta gattaattga aacagcaaca gtgcctattt
3661 tggcagtgga tgttgatggg acggtcaacg gatggaatat aaaaatcgcc gagttgacag
3721 gtcttccggt tggcgaagct attggaaaac atctactcac cctggttgag gattcttcaa
3781 ctgatatagt caagaagatg ctcaacttgg cactgcaggg tatgcctttt ttccttttcc
3841 atcttattat cctttactta agactctaac tgttgatttt gttctcttat aatgtaatca
3901 ggtgaagaag agaagaatgt tcaattcgag ataaaaacac atggggatca ggtggaatcc
3961 ggtcctatta gtttgatagt taacgcatgt gcaagcaagg atcttcgtga aaatgtagtg
4021 ggggtttgtt ttgtggccca agatataact gctcagaaga ctgtcatgga caaattcacc
4081 cgaatcgaag gcgattacaa agcaattgtg cagaacccaa atcagttgat ccctcctata
4141 ttcggtacag atgaatttgg ctggtgttgt gagtggaatg cagctatgat taagttaacc
4201 ggatggaagc gcgaggaggt gatggataaa atgcttctcg gagaggtttt cggaactcaa
4261 atgtcttgtt gtcgtctaaa gaatcaagaa gcttttgtta atttcggcat tgtacttaat
4321 aaagccatga ccggtttgga aacagaaaag gtcccttttg gcttcttctc tcgaaaaggc
4381 aagtatgtag agtgcctact ctcggtgagt aagaaaatcg acgcagaggg cctagttacc
4441 ggagtcttct gtttcttgca gttagctagc cctgagctgc aacaagcatt acatattcag
4501 cgcctgtccg aacaaaccgc tctcaagaga ctgaaagtac taacttacat gaaaaggcag
4561 atcaggaatc cgttggctgg gatcgtgttt tccagtaaaa tgctggaggg tactgacttg
4621 gaaaccgaac aaaagcgaat cgtgaacact agttctcagt gccaacgcca gcttagcaaa
4681 attcttgacg actctgatct cgacggcatc attgatgggt atgatatcag taaatatatt
4741 gttcttttaa catttttttt tacccttact cacattcatg tgtgaaattt tgacaggtac
4801 ttggatcttg agatggctga attcacttta catgaggtac tggttacctc tcttagtcaa
4861 gtcatgaata ggagtaacac aaagggtatc cgtatagcca acgatgttgc ggagcatatc
4921 gcgagggaaa ccttgtatgg tgatagtctt aggcttcagc aggtcctagc tgacttttta
4981 ctaatttcca tcaattccac acctaatgga ggccaggttg ttatagcagc ctccttaact
5041 aaagaacagt tgggaaaatc tgtccatctt gttaacttgg agctcaggta actgttccat
5101 attcacgcat gtatcgattt tcagtatccg atgatttaag cctcggtaat aatcttagct
5161 ttggtgaaac tgctaactgc aataaactaa tatctgtata tattttgttt gcgatttgtg
5221 tagcataaca cacggtggta gtggcgtgcc agaagcggcg ctgaaccaga tgtttggaaa
5281 taatgtgcta gaatctgagg agggtattag cctacacatc agtcggaagt tgttaaagct
5341 tatgaatgga gatgttcgtt atttaaaaga agcaggaaaa tcatcgttta ttctatctgt
5401 tgaacttgca gcagctcata agttgaaagg ttgaaatttt ggaaaaataa taaaagtgaa
5461 cacggcatgc tattgttcaa tgtaactctt attttgtttc atgtttcttt aacttgttgt
5521 aacgtatgtt gtagatatgt gtattagtgt ctctttcaca ctcgtggcct attcttattt
5581 cttagtcatg ctttatgttt tttgttttat ttttagagca attaatggca tgtgtgggga
5641 tgaacgcagt tggggaaaac agttaataac aactatgcta tgacttactg tactagtttc
5701 tcaatatctt ctttctctgc tttattcagt cctgtcaccc atactatata tagtacacat
5761 atatagtaca atctaggaag agtttaaaga gtacattcca cccaattaca agttctgaat
5821 aacaaactag tgactctttt aacaatcttg attactcaca gcactgacaa ataaaagctt
5881 cctaccccag atttgagcta cttgtacctc attgcatttc tctttgcctc gcaattgtgg
5941 aatggactcc tcctcttctg accctatcct ttccaaatct tcctcttcat agttcatgac
6001 atcccgagtc catcaaaact gaccttgtcc ttaaggtcaa aggtcgggta aatagcatat
6061 atgtctctca aaacttggtt ttgatcatta atagtgtctt tcttccaatc catcacagct
6121 aacggcttga tgtgaggccg gtatccaaga ggcatatcca aggttttcat agttgtatca
6181 aaatagggtt tcaagtttca actgtgatat atggaacata agacgaatcc tatgggtgca
6241 tgggaatttc gatagaaatg ctac
//