GenBank-Updates@genbank.bio.net (05/26/91)
LOCUS RICWAXZ 5499 bp ds-DNA PLN 26-MAY-1991
DEFINITION Rice waxy gene for glycogen (starch) synthetase (EC 2.4.1.11)
ACCESSION X53694
KEYWORDS glycogen (starch) synthetase; starch synthase; waxy gene.
SOURCE Oryza sativa DNA.
ORGANISM Oryza sativa
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (bases 1 to 5499)
AUTHORS Wang,Z.Y.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 5499)
AUTHORS Wang,Z.Y., Wu,Z.L., Xing,Y.Y., Zheng,F.G., Guo,X.L., Zhang,W.G. and
Hong,M.M.
TITLE Nucleotide sequence of rice waxy gene
JOURNAL Nucleic Acids Res. 18, 5898-5898 (1990)
STANDARD full automatic
COMMENT *source: strain=Japonica, Hanfeng; library=lambda EMBL3; *source:
clone=lambda-Wx2 and lambda-Wx5;
From EMBL entry OSWAXY; dated 08-OCT-1990.
FEATURES Location/Qualifiers
mRNA <1548..1547
/note="exon 2"
CDS 1209..1547
/note="starch synthase"
/codon_start=1209
intron 1548..1660
/note="intron II"
mRNA 1661..1741
/note="exon 3"
CDS 1661..1741
/note="starch synthase"
/codon_start=1661
intron 1742..1848
/note="intron III"
mRNA 1849..1947
/note="exon 4"
CDS 1849..1947
/note="starch synthase"
/codon_start=1849
intron 1948..2043
/note="intron IV"
mRNA 2044..2133
/note="exon 5"
CDS 2044..2133
/note="starch synthase"
/codon_start=2044
intron 2134..2232
/note="intron V"
mRNA 2233..2296
/note="exon 6"
CDS 2233..2296
/note="starch synthase (2296 is 1st base in codon)"
/codon_start=2233
intron 2297..2388
/note="intron VI"
mRNA 2389..2489
/note="exon 7"
CDS 2389..2489
/note="starch synthase (2389 is 2nd base in codon)"
/codon_start=2389
intron 2490..2579
/note="intron VII"
mRNA 2580..2689
/note="exon 8"
CDS 2580..2689
/note="starch synthase (2689 is 2nd base in codon)"
/codon_start=2580
intron 2690..2810
/note="intron VIII"
mRNA 2811..3053
/note="exon 9"
CDS 2811..3054
/note="starch synthase (2811 is 3rd base in codon)"
/codon_start=2811
intron 3055..3171
/note="intron IX"
mRNA 3172..3348
/note="exon 10"
CDS 3172..3348
/note="starch synthase"
/codon_start=3172
intron 3349..3591
/note="intron X"
mRNA 3592..3783
/note="exon 11"
CDS 3592..3783
/note="starch synthase"
/codon_start=3592
intron 3784..3889
/note="intron XI"
mRNA 3890..3976
/note="exon 12"
CDS 3890..3976
/note="starch synthase"
/codon_start=3890
intron 3977..4085
/note="intron XII"
mRNA 4086..4214
/note="exon 13"
CDS 4086..4214
/note="starch synthase"
/codon_start=4086
intron 4215..4571
/note="intron XIII"
mRNA 4572..>4571
/note="exon 14"
CDS 4572..4685
/note="starch synthase"
/codon_start=4572
misc_feature 4900..4905
/note="pot. polyadenylation signal"
misc_feature 5019..5024
/note="pot. polyadenylation signal"
BASE COUNT 1529 a 1143 c 1212 g 1614 t 1 others
ORIGIN
1 cagcagagga aaaaaatggc gagggagaaa ggtgttgccc gaaaatgcca cggcgaggta
61 tctgcttctg tgtgtgtgtn atactgtgat gtgatcgatc acatgcatct ttcattgctc
121 gtttttcctt acaagtagtc tcatacatgc taatttctgt aaggtgttgg gctggaaatt
181 aattaattaa ttaattgact tgccaagatc catatatatg tcctgatatt aaatcttcgt
241 tcgttatgtt tggttaggct gatcaatgtt attctagagt ctagagaaac acacccaggg
301 gttttccaac tagctccaca agatggtggg ctagctgacc tagatttgaa gtctcactcc
361 ttataattat tttatattag atcattttct aatattcgtg tcttttttta ttctagagtc
421 tagatcttgt gttcaactct cgttaaatca tgtctctcgc cactggagaa acagatcagg
481 agggtttatt ttgggtatag gtcaaagcta agattgaaat tcacaaatag taaaatcaga
541 atccaaccaa ttttagtagc cgagttggtc aaaggaaaat gtatatagct agatttattg
601 ttttggcaaa aaaaaatctg aatatgcaaa atacttgtat atctttgtat taagaagatg
661 aaaataagta gcagaaaatt aaaaaatgga ttatatttcc tgggctaaaa gaattgttga
721 tttggcacaa ttaaattcag tgtcaaggtt ttgtgcaaga attcagtgtg aaggaataga
781 ttctcttcaa aacaatttaa tcattcatct gatctgctca aagctctgtg catctccggg
841 tgcaacggcc aggatattta ttgtgcagta aaaaaatgtc atatccccta gccacccaag
901 aaactgctcc ttaagtcctt ataagcacat atggcattgt aatatatatg tttgagtttt
961 agcgacaatt tttttaaaaa cttttggtcc tttttatgaa cgttttaagt ttcactgtct
1021 ttttttttcg aattttaaat gtagcttcaa attctaatcc ccaatccaaa ttgtaataaa
1081 cttcaattct cctaattaac atcttaattc atttatttga aaaccagttc aaattctttt
1141 aggctcacca aaccttaaac aattcaattc agtgcagaga tcttccacag aacagctaga
1201 caaccaccat gtcggctctc accacgtccc agctcgccac ctcggccacc ggcttcggca
1261 tcgccgacag gtcggcgccg tcgtcgctgc tccgccacgg gttccagggc ctcaagcccc
1321 gcagccccgc cggcggcgac gcgacgtcgc tcagcgtgac gaccagcgcg cgcgcgacgc
1381 ccaagcagca gcggtcggtg cagcgtggca gccggaggtt cccctccgtc gtcgtgtacg
1441 ccaccggcgc cggcatgaac gtcgtgttcg tcggcgccga gatggccccc tggagcaaga
1501 ccggcggcct cggtgacgtc ctcggtggcc tcccccctgc catggctgta agcacacaca
1561 aacttcgatc gctcgtcgtc gctgaccgtc gtcgtcttca actgttcttg atcatcgcat
1621 tggatggatg tgtaatgttg tgttcttgtg ttctttgcag gcgaatggcc acagggtcat
1681 ggtgatctct cctcggtacg accagtacaa ggacgcttgg gataccagcg ttgtggctga
1741 ggtaggagca tatgcgtgat cagatcatca caagatcgat tagctttaga tgatttgtta
1801 catttcgcaa gattttaacc caagtttttg tggtgcaatt cattgcagat caaggttgca
1861 gacaggtacg agagggtgag gtttttccat tgctacaagc gtggagtcga ccgtgtgttc
1921 atcgaccatc cgtcattcct ggagaaggtg gagtcatcat tagtttacct tttttgtttt
1981 tactgaatta ttaacagtgc atttagcagt tggactgagc ttagcttcca ctggtgattt
2041 caggtttggg gaaagaccgg tgagaagatc tacggacctg acactggagt tgattacaaa
2101 gacaaccaga tgcgtttcag ccttctttgc caggtcagtg attacttcta tctgatgatg
2161 gttggaagca tcacgagttt accatagtat gtatggattc ataactaatt cgtgtattga
2221 tgctacctgc aggcagcact cgaggctcct aggatcctaa acctcaacaa caacccatac
2281 ttcaaaggaa cttatggtga gttacaattg atctcaagat cttataactt tcttcgaagg
2341 aatccatgat gatcagacta attccttccg gtttgttact gacaacaggt gaggatgttg
2401 tgttcgtctg caacgactgg cacactggcc cactggcgag ctacctgaag aacaactacc
2461 agcccaatgg catctacagg aatgcaaagg tctatgcttg ttcttgccat accaactcaa
2521 atctgcatgc acactgcatt ctgttcagaa actgactgtc tgaatctttt tcactgcagg
2581 ttgctttctg catccacaac atctcctacc agggccgttt cgctttcgag gattaccctg
2641 agctgaacct ctccgagagg ttcaggtcat ccttcgattt catcgacggg tatgagtaag
2701 attctaagag taacttactg tcaattcgcc atatatcgat tcaatccaag atccttttga
2761 gctgacaacc ctgcactact gtccatcgtt caaatccggt taaatttcag gtatgacacg
2821 ccggtggagg gcaggaagat caactggatg aaggccggaa tcctggaagc cgacagggtg
2881 ctcaccgtga gcccgtacta cgccgaggag ctcatctccg gcatcgccag gggatgcgag
2941 ctcgacaaca tcatgcggct caccggcatc accggcatcg tcaacggcat ggacgtcagc
3001 gagtgggatc ctagcaagga caagtacatc accgccaagt acgacgcaac cacggtaaga
3061 acgaatgcat tcttcacaag atatgcaatc tgaattttct ttgaaaaaga aattatcatc
3121 tgtcacttct tgattgattc tgacaaggca agaatgagtg acaaatttca ggcaatcgag
3181 gcgaaggcgc tgaacaagga ggcgttgcag gcggaggcgg gtctcccggt cgacaggaaa
3241 atcccactga tcgcgttcat cggcaggctg gaggaacaga agggccctga cgtcatggcc
3301 gccgccatcc cggagctcat gcaggaggac gtccagatcg ttcttctggt ataatataat
3361 acactacaag acacacttgc acgatatgcc aaaaattcag aacaaattca gtggcaaaaa
3421 aaaaactcga atattaggga aggacctaat aatatcaaat aattagaagg ggtgaggctt
3481 tgaacccaga tcgtctagtc caccaccttg tggagttagc cggaagacct ctgagcattt
3541 ctcaattcag tggcaaatga tgtgtataat tttgatccgt gtgtgtttca gggtactgga
3601 aagaagaagt tcgagaagct gctcaagagc atggaggaga agtatccggg caaggtgagg
3661 gccgtggtga agttcaacgc gccgcttgct catctcatca tggccggagc cgacgtgctc
3721 gccgtcccca gccgcttcga gccctgtgga ctcatccagc tgcaggggat gagatacgga
3781 acggtataca atttccatct atcaattcga ttgttcgatt tcatctttgt gcaatgcaat
3841 gcaattgcaa atgcaaatgc atgatgattt tccttgttga tttctccagc cctgtgcttg
3901 cgcgtccacc ggtgggctcg tggacacggt catcgaaggc aagactggtt tccacatggg
3961 ccgtctcagc gtcgacgtaa gcctatacat ttacataaca atcagatatg acacatccta
4021 ataccgataa gtcggtacac tactacacat ttacatggtt gctggttata tggttttttt
4081 ggcagtgcaa ggtggtggag ccaagcgacg tgaagaaggt ggcggccacc ctgaagcgcg
4141 ccatcaaggt cgtcggcacg ccggcgtacg aggagatggt caggaactgc atgaaccagg
4201 acctctcctg gaaggtataa attacgaaac aaatttaacc caaacatata ctatatactc
4261 cctccgcttc taaatattca acgccgttgt cttttttaaa tatgtttgac cattcgtctt
4321 attaaaaaaa ttaaataatt ataaattctt ttcctatcat ttgattcatt gttaaatata
4381 cttatatgta tacatatagt tttacatatt tcataaaatt ttttgaacaa gacgaacggt
4441 caaacatgtg ctaaaaagtt aacggtgtcg aatattcaga aacggaggga gtataaacgt
4501 cttgttcaga agttcagaga ttcacctgtc tgatgctgat gatgattaat tgtttgcaac
4561 atggatttca ggggcctgcg aagaactggg agaatgtgct cctgggcctg ggcgtcgccg
4621 gcagcgcgcc ggggatcgaa ggcgacgaga tcgcgccgct cgccaaggag aacgtggctg
4681 ctccttgaag agcctgagat ctacatatgg agtgattaat taatatagca gtatatggat
4741 gagagacgaa tgaaccagtg gtttgtttgt tgtagtgaat ttgtagctat agccaattat
4801 ataggctaat aagtttgatg ttgtactctt ctgggtgtgc ttaagtatct tatcggaccc
4861 tgaatttatg tgtgtggctt attgccaata atattaagta ataaagggtt tattatatta
4921 ttatatatgt tatattatac ttcccctgtt ccatattata ccatgccatt tttgttttat
4981 gccaagtcaa actttttata tttaaccaaa tttataaaaa taaatatagc aacatttgta
5041 atactgaact atttttttgt tagacagact gtcaaaactt aaattatagg tactatattt
5101 gtctcaaaat ataataactt ttagttatgt atctgggtat gtgtctgtct atatgtgtag
5161 ctaaaagttg ttttgtgtca aaaaaaatgt tattatattt tttttataaa tttatttaag
5221 tttgaaggag cagtagtttg actcaggata agatgtaaaa taatttataa tatactctct
5281 cgtcccattt taaatgcaac caaaactttg atcgtttatc ttatttattt ttttataatt
5341 aatactttta ttgttatgag ataataaaac atgaatagta ctttatacat gacttatgtt
5401 tttaattttt ttaaataaaa cgaatgatta aaattatgca cgaaaaatta tagttgcact
5461 taaaatgtga cggagggagt ggatacgaag gaactaggt
//