GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII3 74 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 7-28) N-prepropeptide exon ACCESSION X03320 M23757 M24938 KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 74) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLII3; dated 28-MAR-1991. FEATURES Location/Qualifiers CDS <1..>68 /note="(aa 7-28), exon 1" /product="pro-alpha 1(II) collagen" /codon_start=1 intron 69..>74 /note="intron I" BASE COUNT 7 a 24 c 24 g 19 t ORIGIN 1 tccccagtcg ctggtgctgc tgacgctgct cgtcgccgct gtccttcggt gtcagggcca 61 ggatgtccgt aagt //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII5 66 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 341-360) triple helical exon ACCESSION X02378 M23870 KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 66) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLII5; dated 28-MAR-1991. FEATURES Location/Qualifiers CDS <1..60 /note="(aa 341-360)" /product="pro-alpha 1(II) collagen" /codon_start=1 intron 61..>66 /note="intron" BASE COUNT 12 a 23 c 22 g 9 t ORIGIN 1 cccaagggag ccaacggtga ccctggccgt cctggagaac ctggccttcc cggagcccgg 61 gtaagt //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII6 62 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 361-378) triple helical exon ACCESSION X02377 M23758 M25727 KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 62) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLII6; dated 28-MAR-1991. FEATURES Location/Qualifiers intron <1..2 /note="intron" CDS 3..56 /note="(aa 361-378)" /product="pro-alpha 1(II) collagen" /codon_start=3 intron 37..>62 /note="intron" BASE COUNT 10 a 18 c 19 g 15 t ORIGIN 1 agggtctcac tggccgccct ggtgatgctg gtcctcaagg caaagttggt ccctccgtaa 61 gt //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII9 289 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1000-1095) triple helical-C-propeptide exon ACCESSION X02371 KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 289) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLII9; dated 28-MAR-1991. FEATURES Location/Qualifiers CDS 1..45 /note="pro-alpha 1(II) triple helical domain (aa 1000-1014)" /codon_start=1 CDS 46..289 /note="pro-alpha 1(II) C-prepropeptide domain (aa 1015-1095) (289 is 1st base in codon)" /codon_start=46 BASE COUNT 56 a 105 c 83 g 45 t ORIGIN 1 ggtcctcctg gaaatcctgg cccccctggt ccccctggtc cccctggccc tggcatcgac 61 atgtccgctt ttgctggctt aggcccgaga gagaagggcc ccgaccccct gcagtacatg 121 cgggccgacc aggcggccgg tggcctgaga cagcatgacg ccgaggtgga tgccacactc 181 aagtccctca acaaccagat tgagagcatc cgcagccccg agggctcccg caagaaccct 241 gctcgcacct gcagagacct gaaactctgc caccctgagt ggaagagtg //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIA 188 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1096-1158) (C-prepropeptide exon) ACCESSION X02372 KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 188) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLIIA; dated 28-MAR-1991. FEATURES Location/Qualifiers CDS 1..188 /note="pro-alpha 1(II) (aa 1096-1158) (1 is 2nd base in codon)" /codon_start=1 BASE COUNT 57 a 46 c 50 g 35 t ORIGIN 1 gagactactg gattgacccc aaccaaggct gcaccttgga cgccatgaag gttttctgca 61 acatggagac tggcgagact tgcgtctacc ccaatccagc aaacgttccc aagaagaact 121 ggtggagcag caagagcaag gagaagaaac acatctggtt tggagaaacc atcaatggtg 181 ggttccat //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIB 243 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1159-1239) C-prepropeptide exon ACCESSION X02373 KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 243) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLIIB; dated 28-MAR-1991. FEATURES Location/Qualifiers CDS 1..243 /note="pro-alpha 1(II) (aa 1159-1239)" /codon_start=1 misc_feature 88..96 /note="pot. glycosylation site" BASE COUNT 58 a 79 c 66 g 40 t ORIGIN 1 ttcagctatg gagatgacaa cctggctccc aacaccgccg acgtccagat gaccttcctg 61 cgcctgctgt ccgccgaggg ctcccagaac atcacctacc actgcaagaa cagcattgcc 121 tacatggacg aggcggctgg caacctcaag aaggccctgc tcatccaggg ctccaatgac 181 gtggagatcc gggcagaggg caatagcagg ttcacgtaca ctgccctgaa ggatggctgc 241 acg //
GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIC 147 bp ds-DNA PRI 22-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1240-1287) C-prepropeptide exon ACCESSION X02374 KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 147) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL 26 entry HSCOLIIC; dated 28-MAR-1991. FEATURES Location/Qualifiers mRNA 1..>147 /note="exon" CDS 1..144 /note="pro-alpha 1(II) (aa 1240-1287)" /codon_start=1 BASE COUNT 38 a 38 c 40 g 31 t ORIGIN 1 aaacataccg gtaagtgggg caagactgtt atcgagtacc ggtcacagaa gacctcacgc 61 ctccccatca ttgacattgc acccatggac ataggagggc ccgagcagga attcggtgtg 121 gacatagggc ctgtctgctt cttgtaa //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS HUMCOLII4 260 bp ds-DNA PRI 27-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 29-45) N-prepropeptide exons ACCESSION X03319 KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 260) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL entry HSCOLII4; dated 18-NOV-1986. FEATURES Location/Qualifiers intron <1..2 /note="intron I" CDS 3..19 /note="pro-alpha 1(II) (aa 29-34), exon 2 (3 is 2nd base in codon)" /codon_start=3 intron 20..221 /note="intron II" misc_feature 163..201 /note="vestigial exon sequence" CDS 222..254 /note="pro-alpha 1(II) (aa 35-45), exon 3" /codon_start=222 intron 255..>260 /note="intron III" BASE COUNT 51 a 43 c 77 g 85 t 4 others ORIGIN 1 agggcaacca ggaccaaagg taagggcttt cttctttttc ttttttcgtg tttttttggc 61 tttgtgtttc gctcggggca atgctatgtt aatccagtct gtgatttttt ggacatcggg 121 gggtgtctgt ttcggnnnna acacaggggc tgctggcagg gttttagact aggggcttag 181 tgggctactc ggcttaatcc tgtgaatgtt tcatgtttca gggacagaaa ggagaacctg 241 gagacatcaa ggatgtaagt //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS HUMCOLII8 338 bp ds-DNA PRI 27-MAY-1991 DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 856-909) triple helical exon ACCESSION X02375 KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2. SOURCE Homo sapiens DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 338) AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E., Tsipouras,P. and Ramirez,F. TITLE Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985) STANDARD full automatic COMMENT From EMBL entry HSCOLII8; dated 18-DEC-1990. FEATURES Location/Qualifiers intron <1..6 /note="intron" CDS join(7..104,278..331) /product="pro-alpha 1(II)" /codon_start=7 intron 105..277 /note="intron" intron 332..>338 /note="intron" BASE COUNT 64 a 104 c 105 g 65 t ORIGIN 1 tgacagggta atcgtggtga aaccggtgct gtgggagctc ctggaacccc tgggccccct 61 ggctcccctg gccccgctgg tccaactggc aagcaaggag acagaggaga agctgtaagt 121 atcctggaat tcactaaaag ccgccttccc ctgcgcggtg gggctgaggc agttcctggg 181 ttttcccagt gtctggacta aggagcagtg gccccagatg cagaggaggc ccccacctgt 241 cctgcttttc tctagcctgc gctcactctc tcctcagggt gcacaaggcc ccatgggacc 301 ctcaggacca gctggagccc ggggaatcca ggtgagta //