GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII3 74 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 7-28)
N-prepropeptide exon
ACCESSION X03320 M23757 M24938
KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 74)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLII3; dated 28-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..>68
/note="(aa 7-28), exon 1"
/product="pro-alpha 1(II) collagen"
/codon_start=1
intron 69..>74
/note="intron I"
BASE COUNT 7 a 24 c 24 g 19 t
ORIGIN
1 tccccagtcg ctggtgctgc tgacgctgct cgtcgccgct gtccttcggt gtcagggcca
61 ggatgtccgt aagt
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII5 66 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 341-360)
triple helical exon
ACCESSION X02378 M23870
KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 66)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLII5; dated 28-MAR-1991.
FEATURES Location/Qualifiers
CDS <1..60
/note="(aa 341-360)"
/product="pro-alpha 1(II) collagen"
/codon_start=1
intron 61..>66
/note="intron"
BASE COUNT 12 a 23 c 22 g 9 t
ORIGIN
1 cccaagggag ccaacggtga ccctggccgt cctggagaac ctggccttcc cggagcccgg
61 gtaagt
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII6 62 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 361-378)
triple helical exon
ACCESSION X02377 M23758 M25727
KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 62)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLII6; dated 28-MAR-1991.
FEATURES Location/Qualifiers
intron <1..2
/note="intron"
CDS 3..56
/note="(aa 361-378)"
/product="pro-alpha 1(II) collagen"
/codon_start=3
intron 37..>62
/note="intron"
BASE COUNT 10 a 18 c 19 g 15 t
ORIGIN
1 agggtctcac tggccgccct ggtgatgctg gtcctcaagg caaagttggt ccctccgtaa
61 gt
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLII9 289 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1000-1095)
triple helical-C-propeptide exon
ACCESSION X02371
KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 289)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLII9; dated 28-MAR-1991.
FEATURES Location/Qualifiers
CDS 1..45
/note="pro-alpha 1(II) triple helical domain (aa
1000-1014)"
/codon_start=1
CDS 46..289
/note="pro-alpha 1(II) C-prepropeptide domain (aa
1015-1095) (289 is 1st base in codon)"
/codon_start=46
BASE COUNT 56 a 105 c 83 g 45 t
ORIGIN
1 ggtcctcctg gaaatcctgg cccccctggt ccccctggtc cccctggccc tggcatcgac
61 atgtccgctt ttgctggctt aggcccgaga gagaagggcc ccgaccccct gcagtacatg
121 cgggccgacc aggcggccgg tggcctgaga cagcatgacg ccgaggtgga tgccacactc
181 aagtccctca acaaccagat tgagagcatc cgcagccccg agggctcccg caagaaccct
241 gctcgcacct gcagagacct gaaactctgc caccctgagt ggaagagtg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIA 188 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1096-1158)
(C-prepropeptide exon)
ACCESSION X02372
KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 188)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLIIA; dated 28-MAR-1991.
FEATURES Location/Qualifiers
CDS 1..188
/note="pro-alpha 1(II) (aa 1096-1158) (1 is 2nd base in
codon)"
/codon_start=1
BASE COUNT 57 a 46 c 50 g 35 t
ORIGIN
1 gagactactg gattgacccc aaccaaggct gcaccttgga cgccatgaag gttttctgca
61 acatggagac tggcgagact tgcgtctacc ccaatccagc aaacgttccc aagaagaact
121 ggtggagcag caagagcaag gagaagaaac acatctggtt tggagaaacc atcaatggtg
181 ggttccat
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIB 243 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1159-1239)
C-prepropeptide exon
ACCESSION X02373
KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 243)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLIIB; dated 28-MAR-1991.
FEATURES Location/Qualifiers
CDS 1..243
/note="pro-alpha 1(II) (aa 1159-1239)"
/codon_start=1
misc_feature 88..96
/note="pot. glycosylation site"
BASE COUNT 58 a 79 c 66 g 40 t
ORIGIN
1 ttcagctatg gagatgacaa cctggctccc aacaccgccg acgtccagat gaccttcctg
61 cgcctgctgt ccgccgaggg ctcccagaac atcacctacc actgcaagaa cagcattgcc
121 tacatggacg aggcggctgg caacctcaag aaggccctgc tcatccaggg ctccaatgac
181 gtggagatcc gggcagaggg caatagcagg ttcacgtaca ctgccctgaa ggatggctgc
241 acg
//GenBank-Updates@genbank.bio.net (05/22/91)
LOCUS HUMCOLIIC 147 bp ds-DNA PRI 22-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 1240-1287)
C-prepropeptide exon
ACCESSION X02374
KEYWORDS collagen; collagen type 2; collagen-alpha-1 type II.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 147)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL 26 entry HSCOLIIC; dated 28-MAR-1991.
FEATURES Location/Qualifiers
mRNA 1..>147
/note="exon"
CDS 1..144
/note="pro-alpha 1(II) (aa 1240-1287)"
/codon_start=1
BASE COUNT 38 a 38 c 40 g 31 t
ORIGIN
1 aaacataccg gtaagtgggg caagactgtt atcgagtacc ggtcacagaa gacctcacgc
61 ctccccatca ttgacattgc acccatggac ataggagggc ccgagcagga attcggtgtg
121 gacatagggc ctgtctgctt cttgtaa
//GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS HUMCOLII4 260 bp ds-DNA PRI 27-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 29-45)
N-prepropeptide exons
ACCESSION X03319
KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 260)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL entry HSCOLII4; dated 18-NOV-1986.
FEATURES Location/Qualifiers
intron <1..2
/note="intron I"
CDS 3..19
/note="pro-alpha 1(II) (aa 29-34), exon 2 (3 is 2nd base
in codon)"
/codon_start=3
intron 20..221
/note="intron II"
misc_feature 163..201
/note="vestigial exon sequence"
CDS 222..254
/note="pro-alpha 1(II) (aa 35-45), exon 3"
/codon_start=222
intron 255..>260
/note="intron III"
BASE COUNT 51 a 43 c 77 g 85 t 4 others
ORIGIN
1 agggcaacca ggaccaaagg taagggcttt cttctttttc ttttttcgtg tttttttggc
61 tttgtgtttc gctcggggca atgctatgtt aatccagtct gtgatttttt ggacatcggg
121 gggtgtctgt ttcggnnnna acacaggggc tgctggcagg gttttagact aggggcttag
181 tgggctactc ggcttaatcc tgtgaatgtt tcatgtttca gggacagaaa ggagaacctg
241 gagacatcaa ggatgtaagt
//GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS HUMCOLII8 338 bp ds-DNA PRI 27-MAY-1991
DEFINITION Human gene fragment for pro-alpha 1(II) collagen (aa 856-909)
triple helical exon
ACCESSION X02375
KEYWORDS alpha-1 type 2 collagen; collagen; collagen type 2.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 338)
AUTHORS Sangiorgi,F.O., Benson-Chanda,V., de,W.W.J., Sobel,M.E.,
Tsipouras,P. and Ramirez,F.
TITLE Isolation and partial characterization of the entire human pro
alpha 1(II) collagen gene
JOURNAL Nucleic Acids Res. 13, 2207-2225 (1985)
STANDARD full automatic
COMMENT From EMBL entry HSCOLII8; dated 18-DEC-1990.
FEATURES Location/Qualifiers
intron <1..6
/note="intron"
CDS join(7..104,278..331)
/product="pro-alpha 1(II)"
/codon_start=7
intron 105..277
/note="intron"
intron 332..>338
/note="intron"
BASE COUNT 64 a 104 c 105 g 65 t
ORIGIN
1 tgacagggta atcgtggtga aaccggtgct gtgggagctc ctggaacccc tgggccccct
61 ggctcccctg gccccgctgg tccaactggc aagcaaggag acagaggaga agctgtaagt
121 atcctggaat tcactaaaag ccgccttccc ctgcgcggtg gggctgaggc agttcctggg
181 ttttcccagt gtctggacta aggagcagtg gccccagatg cagaggaggc ccccacctgt
241 cctgcttttc tctagcctgc gctcactctc tcctcagggt gcacaaggcc ccatgggacc
301 ctcaggacca gctggagccc ggggaatcca ggtgagta
//