GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS HALRNAPOP 11208 bp ds-DNA BCT 27-MAY-1991 DEFINITION H. halobium RNA polymerase subunit operon. ACCESSION X57144 X14999 KEYWORDS RNA polymerase; RNA polymerase subunit A; RNA polymerase subunit B''; RNA polymerase subunit C; ribosomal protein; ribosomal protein S12; ribosomal protein S7. SOURCE Halobacterium halobium DNA. ORGANISM Halobacterium halobium Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; Halobacteriales; Halobacteriaceae. REFERENCE 1 (bases 1 to 11208) AUTHORS Leffers,H., Gropp,F., Lottspeich,F., Zillig,W. and Garrett,R.A. TITLE Sequence, Organisation, Transcription and Evolution of RNA Polymerase Subunit Genes from the Archaebacterial Extreme Halophiles Halobacterium halobium and Halococcus morrhuae JOURNAL J. Mol. Biol. 206, 1-17 (1989) STANDARD full automatic REFERENCE 2 (bases 1 to 11208) AUTHORS Leffers,H. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT *source: strain=R1; library=Lambda EMBL3; See also <X57145> From EMBL entry HHRNAPOP; dated 09-JAN-1991. FEATURES Location/Qualifiers promoter 1351..1356 /note="promoter 1" prim_transcript 1380..>9570 /gene="RNA polymerase subunit operon" mat_peptide 1423..1647 /gene="ORF 75" CDS 1423..1650 /gene="ORF 75" /codon_start=1423 mat_peptide 1651..3219 /product="RNA polymerase subunit B''" /gene="RNA polymerase subunit operon" CDS 1651..3222 /product="RNA polymerase subunit B''" /gene="RNA polymerase subunit operon" /codon_start=1651 mat_peptide 3224..5047 /product="RNA polymerase subunit B'" /gene="RNA polymerase subunit operon" CDS 3224..5050 /product="RNA polymerase subunit B'" /gene="RNA polymerase subunit operon" /codon_start=3224 mat_peptide 5050..7962 /product="RNA polymerase subunit A" /gene="RNA polymerase subunit operon" CDS 5050..7965 /product="RNA polymerase subunit A" /gene="RNA polymerase subunit operon" /codon_start=5050 mat_peptide 7958..9148 /product="RNA polymerase subunit C" /gene="RNA polymerase subunit operon" CDS 7958..9151 /product="RNA polymerase subunit C" /gene="RNA polymerase subunit operon" /codon_start=7958 mat_peptide 9151..9567 /gene="ORF 139" CDS 9151..9570 /gene="ORF 139" /codon_start=9151 promoter 9705..9710 /note="promoter 2" mat_peptide 9734..10159 /product="ribosomal protein HhS12" /gene="RNA polymerase subunit operon" prim_transcript 9734..>10798 /gene="RNA polymerase subunit operon" CDS 9734..10162 /product="ribosomal protein HhS12" /gene="RNA polymerase subunit operon" /codon_start=9734 mat_peptide 10166..10795 /product="ribosomal protein HhS7" /gene="RNA polymerase subunit operon" CDS 10166..10798 /product="ribosomal protein HhS7" /gene="RNA polymerase subunit operon" /codon_start=10166 BASE COUNT 2218 a 3453 c 3887 g 1650 t ORIGIN 1 gaattcctgt gatcgcctag cagaagtcgt atcaccggaa cctggatagc tgtcgagagg 61 agcatatgct gtcgatagcc aacatcgaga cgaccgcagc gactgacccc ccacagacac 121 caacacgcct atagacgggg cgtgtttcgc tcggaccagc aacgatgact gcagcgacag 181 acgcgctcgc atgggttgtc gtcgcggcgt tcgcaacgag cgccctgatc gacgcggcca 241 acgacgacca cgaggcgttg cggcggtacg cccgtcggcg cgtgggccgt gttcgggctg 301 ttctggggcc tgctcatcga acacttcctg ttcgtgcagc agtcactcat cgagggcgca 361 ctcgctgcag cggccgtgcc cgcgtgcctc tacacggcgt acctcgtggc cagcggccgg 421 aagtcgctgg cgacactgac ccgcgcgatc gcggtcatgg ggctgctcta cattccgttc 481 cagacgatcg agccgctgcg gcggtgggcg atcctcacga cgacacacca cgccgcgtgg 541 atcatgggcc aactcggcta ccacccggcg atcgaggtcg ccacgagcta ccacggctac 601 cctgcgaagt tcgcgttcca cgggacgagc gtcgtgaccg gcgaaccctg ggggttcccc 661 acgacggtgc tactggcgtg tacggggatc gggagcatga gcatcgtcgg cgggctcgtg 721 gcggccgtcg acgcgccgat gcggcgcagg ctgcgcgcac tgggggtggc gattccgctg 781 atctacggga tgaacctggt gcgtgtcgtg ttcatcgcga tcgcacacgg caaccagtgg 841 ttcggcgggg atgttatcga aggcgtggtg tttgcgttgt tcccgacgga caaccccaac 901 cgggtgtcgt atctgttcgc ggatcgcgtg cttgcgcagt cgctgtccgt cgtggtgctc 961 gtcgtgttga cgctggcgct gctgcgtatc gtgccggagc tgggcggcgt catcgaggac 1021 gtggcgttcg ttctcaccgg caatgaatac gacatcacgg gccggttcgc cggcgaccgc 1081 tagccggcct ggtcccgtcg gttggcgtgg atcgagacag gaggcgttgg gaacggacgc 1141 ggcgctgtcc gagtagcgga acggagaaag cgcccggagc gggatttgaa cccgcgtcac 1201 aaccgtgaca gggttgtatg atgggccact acaccatccg ggctggctgc actcattcgt 1261 atccggggta tagtattaag actttccaat cgcgggctgt gtgtgtatcg ctgtcgtgtc 1321 gccgttcgcg cgccccgtgg ttgacaaggc ttaaatgctg tgggcagcaa ctggcctgta 1381 gtatctcgtg agagtcagtt ctccccccac gcaggtgcac ccatggtaga cgtaagccaa 1441 cacgaactcg tacccgagca caccgtcctc gatgaggaga cactcgacgg agtgcttgcg 1501 gactacgaca tcgaccgcac ggagcttccg aagatcaaat acaaggatcc agcgctgccc 1561 gacaacgccg aaatcgggga cgtcgtggag atcgttcggg actcgcgaac cacagacgaa 1621 gccgtcgtgt accgactggt gatcgaatag atgctacagg aagacaaacg cgaactgtcc 1681 gaatcgtact tctcgaaaga acgcctcgcc gaacaccact tccgctcgta caacgcgttc 1741 ctcgaacacg gcatgcagga tgtcgtcacc gagaaagaac gcatcgagac ggacatcggc 1801 gacaaagagg acgaagagcc ggtgtgggtt gagctcggtg atgttcgagc cgtcacgccc 1861 cgcgtcaggg aggccgacgg cagcgaggag ctgctgtacc cacaggaagc gcggctgcgg 1921 aacatcacgt actcggcgcc cgtgttcatg gagatgagca tcgtgcgtgg tggcgaagaa 1981 gaagaggagc gtgtcctcga cacgaccgaa acgaaggtcg gtcggatgcc catcatggtg 2041 ggctcggaca aatgcaacat ttccgggttc agcgacgagg aactcatcga gatcggtgag 2101 gacccggccg accccggggg gtatttcatc atcaacggca gcgagcgcgt gttgatgacc 2161 agcgaggacc tcgcgccgaa caagatcctc gccgagtacg actccaagta cggcgacgaa 2221 attcaggtgg cgaagacgtt cagccagcgc cgcggttacc gcgcgctcgt gctcgtcgag 2281 cgcaaccgcg agggcctgct tgaggtgtcg ttcccgtcgg tctctgggtc gatcagcttc 2341 gtaacgctcg tgcgcgcgct cgggttggag tccgacgagg agatcgtcca ccgggtcagc 2401 gaggaccccg agatcgtgaa gttcatgctg gagaacttgg aggaagccga cgtccagacc 2461 caggaggaag ccatcgagga cctgggccag cgcgtcgcct ccgggcaggg caagaactac 2521 cagctcaagc gcgcgaacta cgtcatcgac cgctatctcc tcccacacct ccacgaggac 2581 ggcgtcgagg aagaggagac acgcatcaac aaggcgtact acctctgccg gatggccgag 2641 gcgtgcttcg agttggcgct cggccgccgc gaggccgacg acaaggacca ctacgcgaac 2701 aagcgcctga aggtctccgg agacctgatg aaagacctgt tccgaacggc gctgaacaag 2761 ctcgcgcgtg acgtgaaata ccagctggag cgcgcgaaca tgcggaaccg cgaactcacg 2821 gtgaacacgg tggttcggtc cgacgtgttg accgagcgcc tcgaacatcc gattgcgacc 2881 gggaactggg ttggtgggcg gtccggcgtg agtcagctcg tcgaccgcac cgacttcatg 2941 ggtgtgctca gccacctgcg ccgcctgcgc agtccgctca gccgctccca gccgcacttc 3001 gaagcgcggg acctacacgc gacccagtgg gggcgcatct gtccgtccga gacgccggaa 3061 ggcccgaact gtgggctggt gaagaacttc gcgcaggcga tggagctctc acaggacgtc 3121 gacgacgagc gggacctcaa acaggagctg tcctcgatgg gtgtggaggg aatccccggc 3181 atcagcatgg aaacgacatc gacgacgtcc gcggacgact aacatgagta cggaacgcga 3241 agccaaagtc tacgtcaacg ggagtctggt tggaacacac gagaaccccg aagagttagc 3301 agaacagatc cgggaggcgc gccgccgcgg tgaggtctcc gagatggtga acgtctcggt 3361 cagggaccgc accggtgagg tcatcgtgaa cgcggacgct ggccgggcac gccggccgtt 3421 gctggtcgtg gagaacggcg agccggtggt cacccaggag gaagtggagg ccgtcaagaa 3481 cggcgacatc gacttcgagg acctcgttga ggcggggaaa gtcgagttca tcgacgccga 3541 ggaggaagag gacatcctcg tgggcgtcga ggaggaggag ctcacgaccg accacacgca 3601 cctcgaaatc gacccgcagc tcatcttcgg gatcggtgcg gggatgatcc cgtaccccga 3661 gcacaacgcc agcccccgga ttacgatggg ggcggggatg atgaaacaga gtctggggct 3721 gccggcggcg aactaccgca tccgaccgga cacccgccaa cacctcctgc attacccgca 3781 gaaggcgatg gtgaacaccc agacgaccga gcagatcggc tacgacgacc ggccggcggg 3841 ccagaacttc gtcgtcgccg tgatgtccta cgaggggttc aacatcgagg acgccctggt 3901 catgaacaag gggtccgtgg agcgcgcgct ctcccgatcg catttcttcc gcacgtacga 3961 gggcgaggag cggcgctacc ctggcggcca ggaagaccgc ttcgagatcc ccggcgacga 4021 cgtgcgaggc gcacgcggtg aggacgcgta cacgcacctc gacgacgacg gcctggtgaa 4081 ccccgagacg aaagtcgacg attcgtcggt gctgttgggg aagacgagtc cgccgcggtt 4141 cctcgaagaa cccgaggaca tgggcgggct gagcccgcag aagcgccgcg agacgtcggt 4201 gacgatgcgg tcgggcgagg acggcgtcgt ggacacggtg acgctgatgg agggcgagga 4261 cggctcgaag ctcgcgaaag tctccgtgcg cgacgagcgc atcccggagc tcggcgacaa 4321 gttcgcgagc cgacacggcc agaagggcgt cgtcggccac ctcgcgcccc aggaggacat 4381 gccgttcacg caggaaggcg tggtgccgga cctcgtgttg aacccccacg cgttgccgtc 4441 gcggatgacg gtcggccacg tgctggagat gctcggcggg aaggcggggt cgctggacgg 4501 gcggtccgtc gacggcacgc cgttcactgg cgagggcgag gacgagatcc gtggcacgct 4561 cgaagaccgc ggcttcaaat cctccggcaa ggaggtcatg tactccgggg tgtccgggga 4621 gaaaatcgag gccgagatct tcgtggggac gatcttctac cacaagctct accacatggt 4681 gtcgaacaag ctccacgccc ggtcgaaggg gccggtgcag gtgctgaccc gacaacccac 4741 cgagggtcgc gcccgcgagg gcggactgcg ggtcggtgag atggagcgtg acaccgtcat 4801 cgggcacggc gcggcgatgg tgctcaaaga gcgcctgctc gattcctcgg accgcgagga 4861 gatccacgtg tgtgggaact gcggcatgac ggccgtggag aactacgagc agcgccgggt 4921 gtactgtccg aactgcgagg aggagaccga cgtacacagc atcgagatga gttacgcatt 4981 caagcttcta ctcgacgaga tgaaggcgct cggcatcgcg ccgcgcctgg aactggagga 5041 ggcagtgtaa tgagtgcagg acaagccccc aaggaaatcg gcgaaatcag cttcgggctg 5101 atggacccag aggagtaccg cgacatgtcc gccacgaagg tcatcacggc ggacacgtac 5161 gacgacgacg gcttcccgat cgacatgggg ctgatggacc cccggctggg cgtcatcgat 5221 ccgggcctgg agtgcaagac gtgtgggcag cgctcgggcg gctgcaacgg ccacttcggc 5281 cacatcgagc tcgcggcccc ggtgattcac gtggggttct cgaagctcat ccgccggctc 5341 ctgcgtggga cgtgtcggga gtgcgcgagc ctgctgctca ccgaggagga gaaagacgag 5401 taccgggaga acctcgatcg gacgcggagc ctccgccagg acgtctctga cgtgatgacg 5461 gcggcgatcc gtgaggcccg caagaaagac cactgcccgc actgcgggga ggtccagtac 5521 gacgtcaaac acgagaagcc gacgacgtac tacgaggtcc agcaggtgtt ggcgtcggat 5581 tacagcgagc gcatcgcggc gtcgatgcag cccgatgagg acgaggacga cgctggcgtg 5641 agcccccagg agctcgccga gcagaccgac atcgacatca gccggatcaa cgagatcctc 5701 tccggggagt tccggccgcg ccgcgaggac cgtgaggcca tcgagacggc catcggcgcg 5761 gacctcacca ccgaggacat gaacaagctg atgccgtcgg acatccggga ctggttcgag 5821 gacatccccg gcgaggacct cgaagcgctg ggcgtgaact cggaccgcag tcggcccgag 5881 tggatgatcc tgacggtgct accggtgccg ccggtgacgg cgcgaccgtc gatcacgctt 5941 gacaacggcc agcgcagcga ggacgacctc acgcacaagc tggtggacat catccgcatc 6001 aaccagcggt tcatggagaa ccgcgaggcg ggtgcgccac agctcatcat cgaggacctc 6061 tgggagctgt tgcagtacca cgtcacgacg ttcatggaca acgagatcag cgggacgccg 6121 ccggcgcgac accggtccgg ccgcccgctg aagacgctat cccagcgcct caagggcaaa 6181 gaggggcggt tccgcggcag cctctcgggg aaacgcgtga acttctccgc ccggaccgtc 6241 atctcgccgg accccacgct gtcgctgaac gaggtcgggg tgccggatcg ggtggcgacg 6301 gagatgacac agacgatggt cgtcaacgag cagaacctcg agcgcgcccg acgctacgtc 6361 cggaacggcc ccgaggggca tccgggcgcg aactacgtca cccggcccga cggccgtcgc 6421 gtgcgcgtca ccgagaaggt gtgtgaggag ctcgccgagc gcgtcgagcc cggctgggag 6481 gtccagcgcc acctcatcga cggcgacatc atcatcttca accggcagcc gtcgctgcac 6541 cggatgtcga tcatggccca cgaggtcgtg gtgatgccgt acaagacgtt ccgcctgaat 6601 acggtcgtct gtccgccgta caacgccgac ttcgacggcg acgagatgaa catgcacgcc 6661 ctccagaacg aggaggcgcg ggccgaggcg cgcgtgctga tgcgcgtcca agagcagatc 6721 ctctccccgc ggttcgggga gaacatcatc ggcgcgatcc aggaccacat ctccgggacg 6781 tacctgctca cgaacgacaa tccgcggttc aacgagacgc aggcgtcgga cctgctccgg 6841 cagacccgga tcgacgagct gccggcggcc gccggcaccg acgaggacgg cgaccagtac 6901 tggaccggcc accagatctt ctccgagttg ctgcccgacg acctctcgct tgagttcacc 6961 ggcacgaccg gtgacacggt cgtcatcgag gacggccagc tcttggaggg caccatcgcc 7021 gacgacgagg tcggagagta cggcagtgag atcgtggaca ccatcacgaa agtccacggg 7081 aacacgcgcg cccgcatctt catcaacgag gtcgcgtcgc tggcgatgcg gtcgatcatg 7141 cacttcgggt tctcgatcgg catcgacgac gagacggtgt cgacggaggc ccgcgagcgc 7201 atcgacgagg cgatccagtc ggcgatcgac cgcgtgcagg aactcatcga gacctacgag 7261 aacggggacc tagagagcct gcccggccgc acggtcgacg agaccctgga gatgaagatc 7321 atgcagacgc tcggaaaggc tcgggactcc gcgggggacg tcgccgagga gaacttcgac 7381 gaggacaacc ccgcggtcgt gatggcgaac tccggcgcgc gtgggtcgat gttgaacctc 7441 acgcagatgg cggggtgtgt cggccagcag gcggttcgtg gcgagcgcat caaccgcggc 7501 tacgaggacc gcacgctctc ccatttcgcg cccaacgacc tctccagtga ggcccatggc 7561 ttcgtggaga actcctacac cagcgggctg accccgaagg agttcttctt ccacgcgatg 7621 gggggccgcg aggggctggt tgacacggca gtccggacgt cgaagtccgg ctacctgcag 7681 cgccggctga tcaacgcgct gtcggagctg gagacgcagt acgacggcac cgtgcgggac 7741 accagcgaca cgatcgtgca gttcgagttc ggggaggacg gcaccagtcc ggtgcaggtg 7801 tcctccaacg aggaggtcga catcgacgtc gagcacgtcg ccgaccgcat cctgaactcg 7861 gagttcgaca gcgacaccca gaaggccgag ttcctggagg tcgaggagcc gccgacgaac 7921 ctctccgagc acggcgccgc ctgggaggtg gaatcggatg actgagttcg acgtgacgga 7981 cggcgtccac gacgtgatcg aggacaccga gttgccacgg cggctgaaag acgaggtgct 8041 cgcgaccgcc gaggagcgcg gggtcacgaa gtcccaggcg aacgagatcg ccaccgcggt 8101 tgaggcccaa tatttggaca cgcgcgtcga cccgctcgac ccagtgggga cggtgagcgc 8161 acagtccatc ggggagccgg ggacgcagat gaccatgaac acgttccact acgcgggcgt 8221 cgcggagatg gacgtgacac aggggctgcc gcggctcatc gagctcgtgg acgcccggaa 8281 gacgccggac acgccggtga tggaggtgta cttggaggac gagtacgccg aggagcgcga 8341 gcgcgcccac gaggtcgtct ggaagatcga ggccacgaag atcctcgcgc tgggcgacat 8401 ctccacgaac gtcgcggaca tggtcgtccg catcgacctc aacgaggaca cgctccagga 8461 gcggtggccg cgggttgact ccacgacgca gatcgcgggg gaggtcgcgg agacgatcga 8521 ggggaacctc ggtgtgacgg tgacccagga cggcacgatc ctggagttcg gaccgagcga 8581 gccgtcgtac cgggagctcc tgcagctggt cgagcagctc cgggacatcg tgttcaaggg 8641 catcgaggag gtgtcccggg tcgtgatccg gcgcgaagaa accgagcgcg gcgaggagtt 8701 cgtcctctac accgaggggt cggcgttcaa gaaggcgctc aagatcgagg gcgtcgacgc 8761 cacgcgcacg tcgtgtaaca acatccacga ggtgcacaag accctcggca tcgaggccgc 8821 tcgggaggcg atcatcaacg agacgatgac caccctcgaa gagcagggcc tcgacgacgt 8881 gaacatccgc cacctgatgt tggtcgccga catcatgacc aacgacggca ccatcgagtc 8941 gatcggccgt cacggcatct cggggaacaa gaactccgtg ctcgcgcggg ccgccttcga 9001 ggtgacggtg aaccacctcc tggacgcggc gatccacggc gagagcgacg acctcgacgg 9061 cgtcatcgag aacgtgatcg tcgggaagcc ggttcggctc ggaactggtg acgttgacct 9121 ccggatgggc gcgacacaga cgtcggactg atgaccatcc ggctctcaga tgaggcgcgc 9181 cagctcatcg ccgtcttcga gacggagacc gacgcgacgg ccgtcgattg cctgcccgac 9241 gacgaccggg tggtgtacgt cgtcactgcg ggcgagatgg gggccgccat cggcgacggc 9301 gggagccgcg tcgacgcgct tgaagcgacg ctcgggcgca gcgtggtgct cgtcgaggat 9361 gccccgaccg ccgaggggtt cgtggcgaac gcgctctcgc cggcggcggt ctacaacgtc 9421 acggtcagcg agaacgacac gacggtcgcg tacgcggaag tcgcccacga ggacaagggc 9481 gtcgcgatcg gtgctgacgg cacgaacatc gagaccgcca aggagttggc cgcccgccac 9541 ttcgacatcg acgacatcca gctgacgtag tcccgttcgc tgcgctctct cgggcgctgg 9601 caagggctgc gctgaaagca ctccgctttc ctgccgctcg cttcgtcgcc gcccgtggac 9661 agacgagcgg gtaacacgac cgagcgcagg gcaaaaggtc gggcttaagt gcctccgcgg 9721 gatactcggc tgtatgacga acggcaagta cgccgctcgc aaactcaaga aggaccgcca 9781 gcagcgccgg tggtccgatt ctgagtacgc gcggcgagag cggggcctcg gtaagaagtc 9841 cgaccccctt gagggagccc cacaggggcg tggcatcgta ctcgagaagg tcggcatcga 9901 agcgaagcag ccgaactccg cgatccggaa gtgtgttcgg gtgcagctca tcaagaacgg 9961 caagcaggtg actgcgttct gccccggtga cggtgcgatc tcgttcatcg acgagcacga 10021 cgaggtcacc atcgccggga tcggtggggc gaaaggtcgc gcgatgggcg acctctccgg 10081 tgtcaactac aaggtcgaga aggtcaacgg cgtgagcctc atcgaactgg ttcgcgggaa 10141 cgctgagaag ccggtgcgat aacacatgag cgacgagcaa ccagccgaag acgagacaga 10201 ggaggcagcc gccgaatccg aggacaccca ggaggtcgcg gcgaacgcga agctgttcgg 10261 gaagtgggac gtcgcggaga tccactacga ggacccgagc acgcggcgct acctcgcagt 10321 gacgccggtc gcgcacacga tggggcgaca cgcccaaaag cagttcaaga aaagcgagat 10381 ctccatcgtg gagcgactcg ccaaccgctt gatgaagacg ggcgcgaacg ccgggaagaa 10441 acagcaggca ctgaagatcg ttcgtgacgc gttcgacatc gtccacgagc gaaccgacga 10501 gaaccccatt caggtgctcg tgagcgccgt cgagaacgcg gccccgcggg aggagaccgt 10561 gcgcctgaag tacggcggga tctcggtccc ccaggccgtc gacacggcac cgcagcgccg 10621 cgtcgatcag gcgctgaagt tcctcgcgga cggtgcgcat tcggcgtcgt tcaagacgcc 10681 caccgacgcc gcggaggcgc ttgccaatca gctcgctggc gcggcggact acaacgtcca 10741 gacgtacgcc atcggccaga aaaaggagaa agaacgcgtc gcagcagcgg cacgctgacg 10801 cgggcgggtt tcgattttcg ccgagtcggg tgattccgct tggcgcgctc tcgggtggac 10861 agcgacgcgt ggtcagtcgg cggcggggcc cgtggtggtg gtctgggcgt cggcgtacgt 10921 gcggatcgta tcgacgaggc cgcgccggca gtcgctctcg tcggggtcgg ggccgagcgt 10981 ggcgaaccgg cggcggaacc cgtcgacgtc gatctcgggg gcgtcctggc cggccgcgtg 11041 tgcgaggtcg tacagccggt ggtcgccggg aatggcgtcg tggcgttcca ggagtgcgag 11101 tgcgaacgcg gcgttgaccg cggtcatcga ggggtcggcg ccggcggtga gtcggtggcc 11161 ggcctgctgg cggtcggccg gctggtcggc gatggcggcc gcgagctc //