GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA01 387 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA1) ACCESSION X02934 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 387) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA1; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA01; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>387 /note="precursor" /codon_start=1 CDS 1..54 /note="put. signal peptide (aa -18 to -1)" /codon_start=1 CDS 55..>387 /note="put. mature alpha chain (aa 1-111)" /codon_start=55 CDS 55..324 /note="put. V(alpha) 6 segment" /codon_start=55 CDS 325..327 /note="put. junctional diversity region" /codon_start=325 CDS 328..385 /note="put. J(alpha) segment (385 is 1st base in codon)" /codon_start=328 CDS 386..>387 /note="C(alpha) segment (386 is 2nd base in codon)" /codon_start=386 BASE COUNT 103 a 89 c 103 g 92 t ORIGIN 1 atgggatgtg tgagtggaat tgccattctc ctggctttgg gtattgcggg tgatgctaag 61 actacacaac cagattcaat ggaaagtact gaaggagaaa cggtgcactt gccttgtagc 121 cacgccacaa tcagtggaaa cgagtacatc tattggtacc gacaggttcc tcttcagggt 181 ccagaatatg tgactcacgg tctacaacaa aatacaacca atagtatggc tttcctggct 241 attgcctctg acagaaagtc aagcacctcg atcctgcctc atgtcagcct gagagacgcg 301 gctgtgtacc actgtatcct gagagtagga ggcactgggt ctaagctgtc atttgggaag 361 ggggcaaagc tcacagtgag tccagac //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA19 165 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA19) ACCESSION X02973 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 165) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: clone=TA19; strain=C57Bl/Ka; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA19; dated 02-APR-1988. FEATURES Location/Qualifiers CDS <1..>165 /note="alpha chain fragment (put. aa 62-117)" /codon_start=1 CDS <1..96 /note="put. V(alpha) 2 segment" /codon_start=1 CDS 97..99 /note="put. junctional diversity region" /codon_start=97 CDS 100..154 /note="put. J(alpha) segment" /codon_start=100 CDS 155..>165 /note="C(alpha) segment" /codon_start=155 BASE COUNT 54 a 44 c 31 g 36 t ORIGIN 1 ttcacaacct tcttcaataa aagggagaaa aagctctcct tgcacatcat agactctcag 61 cctggagact cagccaccta cttctgtgca gcaagtgcta caggaaacta caaatacgtc 121 tttggagcag gtaccagact gaaggttata gcacacatcc agaac //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA28 318 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA28) ACCESSION X02931 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 318) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA28; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA28; dated 02-APR-1988. FEATURES Location/Qualifiers CDS <1..>318 /note="alpha chain fragment (put. aa 9-114)" /codon_start=1 CDS <1..252 /note="put. V(alpha) 4 segment" /codon_start=1 CDS 253..255 /note="put. junctional diversity region" /codon_start=253 CDS 256..310 /note="put. J(alpha) segment (310 is 1st base in codon)" /codon_start=256 CDS 311..>318 /note="C(alpha) segment (311 is 2nd base in codon)" /codon_start=311 BASE COUNT 89 a 84 c 73 g 72 t ORIGIN 1 ccagtgacac tgtctgaagg gacttctctg actgtgaact gttcctatga aaccaaacag 61 tacccaaccc tgttctggta tgtgcagtat cccggagaag gtccacagct cctctttaaa 121 gtcccaaagg ccaacgagaa gggaagcaac agaggttttg aagctacata caataaagaa 181 gccacctcct tccacttgca gaaagcctca gtgcaagagt cagactcggc tgtgtactac 241 tgtgctctgg ggaaatctgg cagctggcaa ctcatctttg gatctggaac ccaactgaca 301 gttatgcctg acatccag //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA39 396 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA39) ACCESSION X02929 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 396) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA39; tissue=thymus; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA39; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>396 /note="put. precursor" /codon_start=1 CDS 1..60 /note="put. signal peptide (aa -20 to -1)" /codon_start=1 CDS 61..>396 /note="put. mature alpha chain (aa 1-112)" /codon_start=61 CDS 61..336 /note="put. V(alpha) 2 segment" /codon_start=61 CDS 337..339 /note="junctional diversity region" /codon_start=337 CDS 340..388 /note="J(alpha) segment (388 is 1st base in codon)" /codon_start=340 CDS 389..>396 /note="C(alpha) segment (389 is 2nd base in codon)" /codon_start=389 BASE COUNT 115 a 103 c 93 g 85 t ORIGIN 1 ttcctcctag gccttcacct agctggggtg agtggccagc agcaggagaa acgtgaccag 61 cagcaggtga gacaaagtcc ccaatctctg acagtctggg aaggagagac agcaattctg 121 aactgcagtt atgaggacag cacttttgac tacttcccat ggtactggca gttccctagg 181 gaaagccctg cactcctgat agccatacgt ccagtgtcca ataaaaagga agatggacga 241 ttcacaatct tcttcaataa aagggagaaa aagctctcct tgcacatcac agactctcag 301 cctggagact cagctaccta cttctgtgca gcaaattctg ggacttacca gaggtttgga 361 actgggacaa aactccaagt cgttccaaac atccag //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA46 402 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA46) ACCESSION X02927 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 402) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57BL/Ka; clone=TA46; tissue=thymus; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA46; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>402 /note="put. precursor" /codon_start=1 CDS 1..63 /note="put. signal peptide (aa -21 to -1)" /codon_start=1 CDS 64..>402 /note="put. mature alpha chain (aa 1-13)" /codon_start=64 CDS 64..333 /note="put. V(alpha) 1 segment" /codon_start=64 CDS 334..336 /note="put. junctional diversity region" /codon_start=334 CDS 337..397 /note="put. J(alpha) segment (397 is 1st base in codon)" /codon_start=337 CDS 398..>402 /note="C(alpha) segment (398 is 2nd base in codon)" /codon_start=398 BASE COUNT 100 a 105 c 100 g 97 t ORIGIN 1 atgaaatcct tgagtgtttt actagtggtc ctgtggctcc agttaaactg cgtgaggagc 61 cagcagaagg tgcagcagag cccagaatcc ctcagtgtcc cagagagcat ggcctctctc 121 aactgcactt caagtgatcg taattttcag tacttctggt ggtacagaca gcattctgga 181 gaaggcccca aggcactgat gtccatcttc tctgatggtg acaagaaaga aggcagattc 241 acagctcacc tcaataaggc cagcctgcat gtttccctgc acatcagaga ctcccagccc 301 agtgactccg ctctctactt ctgtgcagct agtgaggtta ctggcagtgg tggaaaactc 361 actttggggg ctggaacaag acttcaggtc aaccttgaca tc //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA57 162 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA57) ACCESSION X02942 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 162) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA57; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA57; dated 02-APR-1988. FEATURES Location/Qualifiers CDS <1..>162 /note="alpha chain fragment (put. aa 65-119)" /codon_start=1 CDS <1..90 /note="put. V(alpha) 10 segment" /codon_start=1 CDS 91..93 /note="put. junctional diversity region" /codon_start=91 CDS 94..151 /note="put. J(alpha) segment" /codon_start=94 CDS 152..>162 /note="C(alpha) segment" /codon_start=152 BASE COUNT 48 a 51 c 27 g 36 t ORIGIN 1 cccactacag tcatcaaaga acgtcgcagc tctttgcaca tttcctcctc ccagacaaca 61 gactcaggca cttatctctg tgctttgcca ctaacaggca ataccggaaa actcatcttt 121 ggactgggga caactttaca agtgcaacca gacatccaga ac //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA61 237 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA61) ACCESSION X02936 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 237) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: clone=TA61; strain=C57Bl/Ka; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA61; dated 02-APR-1988. FEATURES Location/Qualifiers CDS <1..>237 /note="alpha chain fragment (put. aa 37-116)" /codon_start=1 CDS <1..168 /note="put. V(alpha) 8 segment (put. aa 37-93)" /codon_start=1 CDS 169..171 /note="junctional diversity region" /codon_start=169 CDS 172..226 /note="put. J(alpha) segment" /codon_start=172 CDS 227..>237 /note="C(alpha) segment" /codon_start=227 BASE COUNT 63 a 77 c 54 g 43 t ORIGIN 1 gtgcagtatc tcaacgaagc ccctcaggta ctcctgaaga gctccacaga caacaagagg 61 accgagcacc aagggttcca cgccactctc cataagagca gcagctcctt ccatctgcag 121 aagtcctcgc agctgtcaga ctctgccctg tactactgtg ctctccccgg cggcaataca 181 ggcaaattaa cctttgggga tgggaccgtg ctcacagtga agccaaacat ccagaac //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA65 378 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA65) ACCESSION X02932 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 378) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA65; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of J(alpha) segment was determined in comparison to corresponding germline gene segment (see X02841). From EMBL entry MMTCRA65; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>378 /note="precursor" /codon_start=1 CDS 1..39 /note="put. signal peptide (aa -13 to -1)" /codon_start=1 CDS 40..>378 /note="put. mature alpha chain (aa 1-113)" /codon_start=40 CDS 40..315 /note="V(alpha) 4 segment" /codon_start=40 CDS 316..318 /note="junctional diversity region" /codon_start=316 CDS 319..376 /note="J(alpha) segment (376 is 1st base in codon)" /codon_start=319 CDS 377..>378 /note="C(alpha) segment (377 is 2nd base in codon)" /codon_start=377 BASE COUNT 104 a 92 c 95 g 87 t ORIGIN 1 atgattgtga tgctcctcat attcacaagg gcccatggag actcagtgac tcagacggaa 61 ggtcaagtgg ccctctcaga agaggacttt cttacgatac actgcaacta ctcagcctca 121 gggtacccag ctctgttctg gtacgtgcag tatcccggag aaggtccaca gttcctcttt 181 agagcctcaa gggacaaaga gaaaggaagc agcagaggtt ttgaagctac atatgataaa 241 gggaccacct ccttccactt gcggaaagcc tcagtgcaag agtcagactc ggctgtgtac 301 tactgtgctc tggggacgaa cacgggttac cagaacttct attttgggaa aggaacaagt 361 ttgactgtca ttccaaac //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA72 360 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA72) ACCESSION X02933 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 360) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: strain=C57Bl/Ka; clone=TA72; The 3' end of V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of the J(alpha) segment was determined by assuming that it begins one codon after the end of the V(alpha) segment. From EMBL entry MMTCRA72; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>360 /note="precursor" /codon_start=1 CDS 1..18 /note="put. signal peptide (aa -6 to -1)" /codon_start=1 CDS 19..>360 /note="put. mature alpha chain (aa 1-114)" /codon_start=19 CDS 19..294 /note="put. V(alpha) 5 segment" /codon_start=19 CDS 295..297 /note="put. junctional diversity region" /codon_start=295 CDS 298..352 /note="put. J(alpha) segment (352 is 1st base in codon)" /codon_start=298 CDS 353..>360 /note="C(alpha) segment (353 is 2nd base in codon)" /codon_start=353 BASE COUNT 98 a 94 c 91 g 77 t ORIGIN 1 aactgtgtga gcagaggcga gcaggtggag cagcgccctc ctcacctgag tgtccgggag 61 ggagacagtg ccgttatcat ctgcacctac acagacccta acagttatta cttcttctgg 121 tacaagcaag agccgggggc aggtcttcag ttgcttatga aggttttctc aagtacggaa 181 ataaacgaag gacaaggatt cactgtccta ctgaacaaga aagacaaaca actctctctg 241 aacctcacag ctgcccatcc tggggactca gccgtgtact tctgcgcagt cagggccaac 301 atgggctaca aacttacctt cgggacagga acaagcttgt tggttgatcc aaacatccag //
GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS MUSTCRA84 411 bp ss-mRNA ROD 27-MAY-1991 DEFINITION Mouse mRNA fragment for T-cell receptor alpha chain V-J-C (TA84) ACCESSION X02926 KEYWORDS T-cell receptor; T-cell receptor alpha; constant region; joining region; signal peptide; variable region. SOURCE Mus musculus RNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 411) AUTHORS Arden,B., Klotz,J.L., Siu,G. and Hood,L. TITLE Diversity and structure of genes of the alpha family of mouse T-cell antigen receptor JOURNAL Nature 316, 783-787 (1985) STANDARD full automatic COMMENT *source: clone=TA84; strain=C57BL/Ka; tissue=thymus; The 3' end of the V(alpha) segment was determined referring to germline V(alpha) 5H gene segment (see X02833). The 5' end of J(alpha) segment was determined in comparison with corresponding germline segment (see X02839). From EMBL entry MMTCRA84; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 1..>411 /note="put. precursor" /codon_start=1 CDS 1..63 /note="put. signal peptide (aa -21 to -1)" /codon_start=1 CDS 64..>411 /note="put. mature alpha chain TA84 (aa 1-116)" /codon_start=64 CDS 64..333 /note="V(alpha) 1 segment" /codon_start=64 CDS 334..339 /note="junctional diversity region" /codon_start=334 CDS 340..397 /note="J(alpha) segment (397 is 1st base in codon)" /codon_start=340 CDS 398..>411 /note="C(alpha) segment (398 is 2nd base in codon)" /codon_start=398 BASE COUNT 104 a 109 c 101 g 97 t ORIGIN 1 atgaaatcct tgagtgtttt actagtggtc ctgtggctcc agttaaactg cgtgaggagc 61 cagcagaagg tgcagcagag cccagaatcc ctcagtgtcc cagagagcat ggcctctctc 121 aactgcactt caagtgatcg taattttcag tacttctggt ggtacagaca gcattctgga 181 gaaggcccca aggcactgat gtccatcttc tctgatggtg acaagaaaga aggcagattc 241 acagctcacc tcaataaggc cagcctgcat gtttccctgc acatcagaga ctcccagccc 301 agtgactccg ctctctactt ctgtgcagct agtgagagga cttcaagtgg ccagaagctg 361 gtttttggcc aggggaccat attaaaggtg tacctgcaca tccagaaccc a //