GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS AEAAAVAR 4898 bp ds-DNA VRL 27-MAY-1991
DEFINITION Avian adenovirus (CELO) DNA encoding VA (virus-associated) RNA and
six open reading frames
ACCESSION X17217
KEYWORDS unidentified reading frame; virus-associated RNA.
SOURCE Avian adenovirus DNA.
ORGANISM Avian adenovirus
Viridae; ds-DNA nonenveloped viruses; Adenoviridae.
REFERENCE 1 (bases 1 to 4898)
AUTHORS Akopian,T.A.
JOURNAL Unpublished (1989)
STANDARD full automatic
REFERENCE 2 (bases 1 to 4898)
AUTHORS Akopian,T.A., Kruglyak,V.A., Rivkina,M.B., Naroditsky,B.S. and
Tikhonenko,T.I.
TITLE Sequence of an avian adenovirus (CELO) DNA fragment (0-11.2%)
JOURNAL Nucleic Acids Res. 18, 2825-2825 (1990)
STANDARD full automatic
COMMENT *source: tissue=chicken embryo lethal virus; strain=Phelps; **map:
genomic location: 0-11.2%; See <M12738> for overlapping sequences.
Data kindly reviewed (12-SEP-1990) by Akopian T.A.
From EMBL entry ADAAVAR; dated 24-SEP-1990.
FEATURES Location/Qualifiers
repeat_unit 1..63
/note="inverted terminal repeat"
CDS complement(1443..1847)
/note="ORF 6 (AA 1-135)"
/codon_start=1847
CDS complement(1955..2803)
/note="ORF 5 (AA 1-283)"
/codon_start=2803
CDS complement(2806..3768)
/note="ORF 4 (AA 1-321)"
/codon_start=3768
misc_feature 3964..4055
/note="VA RNA"
CDS 4100..4516
/note="ORF 2 (AA 1-139)"
/codon_start=4100
CDS complement(4519..>4898)
/note="ORF 3 (127 AA)"
/codon_start=4898
CDS 4549..>4898
/note="ORF 1 (116 AA)"
/codon_start=4549
BASE COUNT 1123 a 1031 c 1243 g 1501 t
ORIGIN
1 gatgatgtat aataacctca aaaactaacg cagtcataac cggccataac cgcagcgtgt
61 cgctatacgc aaaatagttt tatgacgcat aataaaacca cacccataaa tatgaatgat
121 atcataaatt agtttattga tttatttgtt ttctaaccaa tacgaatacg aatcttgaca
181 ggaacagaca aatagcttct gggtatcaca gtaggctgac gtcactcggt ctccatttaa
241 atacacgcag tctccgcctc cccgaatttc atacctgtat gcaaattaac aggttacttc
301 cgggttttca ctcccggttc aacttccgca tacgtcacat cccggatgtg acgtataaca
361 tgactcacca tggtacgtaa tcatcgtacg atgcatccac ccaatcagct ccgtccttcg
421 acttcctggt tacgcccagc cagttagttc ctgttccgca ttggcgcaga aggaactcct
481 gtaaagggtc tccgttaatt tttgtatttt tcggggaatt aggagtttcc tggaatttaa
541 ctttttacct tttcctcttc ggaacgcgga actgctagct ccgcctcttg ctgtctacaa
601 aatttttcgg cttcactcca attggactct gactccgaaa agtagtagca cttgctttga
661 aatccgatcc agtctcgcgg gcatactacg tcaaactccg gaaggcggtc gcaacctatc
721 gggggcagca ttatggtgag tgaccgtttt tttagacatg ccttttctta cgtcacaata
781 cttacgccca atgattgcta tggtgatggt ggcggttatg acacagcata ttatgcaaat
841 gactggaatc cagatccacc tatgggaggg ctcctttaag atgattcttt ttttgtttct
901 tctggtgcgt tccggtattc cgtcttctat actgacgtca cagaatgttc cgagaagctt
961 ttctaattgg tcggttattc tctgccgcac ttcaggggta tttgcatata ggtaaatgaa
1021 caatatgcaa agcactccta agattataat gcccgcaatg tatcctgtat atgcgcactc
1081 cgctcctata aataattaca gaggtttctt aatgtgttca gttatattct atataatgtc
1141 tatagagggc gctacttact ctctgatggt tcggcggtgt ccatacttat tgcactggag
1201 ttttttgaga cttgattgga tgccgtacat gaatacatta cccctaaagg tccaacgagc
1261 atgctctgat tttcgtaccc gactatgatt gggtcggtat aattccaatg ccaggagaca
1321 ttgccgtagg aaccggccgg tagatggcag gatatattgg tgaaagtttt cccgttgatt
1381 tgcatagtgg ttcccttgac ttcagggcgt ggaatcgggt ctggataatt aatgctctat
1441 tagataggtg atattaatgc atattgtaaa tatgtatata atgacatacc ttgaacaatc
1501 actttgaagt tgtccgtgtg ttccgtgcca tcattttctt cctggtggag tgagtaggtt
1561 ccgctgtcct cgtagctggc attatgaatg gttaagttat gtttggtggg gttaaactcg
1621 gatcgatttt ggaaaccgtt atcgggaaat ttgatttcta attggttagt ggatgacatt
1681 tcggctatca caatttttag atttccaaac cgccattcaa atttgtattg ccctttctgt
1741 ttagccccca cacccaattc tatactgccc cctttcggag cgtatagagt aggatggtcc
1801 gcagcgaggg tgacccccac caacagaact actgtgagaa gtagcattgt tccggtgtgg
1861 gtatctgtct aattttccat tccctatata tacctgtgtg aatgaggaag cacctgagaa
1921 aagtttccat gacgcacact gctttattgt tttatatcat ttcggaattt ccccgcccgt
1981 ttacattgag ctgacgtagg caacacaaga ccgcaattac cgcgataagc aaacagctac
2041 aaatggcaat tgttctagaa atagttttat ggatatccag gtgtgctacg attggtggat
2101 tctcggagac tgtaaagttt atggtgaggg ttaggtttgt ttgctgatca atgacgcatt
2161 ggaaaatccc ggcatctgtt atcagcacag ggtggagagt gagggtgttg tttccgggat
2221 caaagtccat gtttgcagta taggccggtc ctttgtttat tgttctgttg gacaatgccc
2281 agctgataat gagtttcggt tccgcattct ccagccgcac ccatcgtgta taattaccgt
2341 gttcaaatac ctgtccttgt aaggtaaaag tatttccagc ccaagtgtag gcgtggtgta
2401 tcgattgtcc cagcggttgt acagttatca gataggtggc gttgtgtccc gtttcggaga
2461 tcacagtgta caggttagtt cccgcattct tcttggtggt cgtgaggctg attgtacggg
2521 tggtcgtatt ggcgcgtgtt ccttccagga tgatgtcatt catatagagg gtggtctcat
2581 ttccatatat gcccataggg aaatggatgg tttccccttc aaagtacatt tgccggaatg
2641 tacttatatg ggacgctagg aggaggagca gaacaagtgg tctggggtcc atcgcggctc
2701 ggtgtgtatt gaggaagggg ctatcaccat atataggtat ggatgaatga cacagacacg
2761 tacttatgtg cgtcacagct tttttattac gtttgtcaat cattaagttt cgcaatcatc
2821 atcgggacct ttcaatatgt gtattgttac atggggttgt ccggggattt ccagttcaat
2881 gattggatcg ggaacacaga gcctatctct gaagtaccac ccaataaggg cgggtataac
2941 agtcaggatg caaagggcaa gtccaaccca tagggcagta cttcgagcat ccgctcggac
3001 acgtggtatg ggcgtgggct tgctggcagg tgtctctgcg gtagcttctt cttttttctc
3061 gatgggcgtg acttctactc ggaaggtgtg gacggatacc tggtcgaggt tcaccgtgga
3121 cttgtaggtg ccgctgtcgg tggtcttcgc gccttttaag gttagtgtgt ttttaccggg
3181 gttaaaggta actctccctt ggtagcttgc gtacacaata gtagagttaa tggagagata
3241 gtattggagg atgaactggg gcgtgacatc cttgatgaat tcccattcga taatactcat
3301 ggtttcggac acaggtccgt ataaggtaaa gtcctccccc tcccgaacag ttattttggt
3361 aatgttgatt gtctgtatgg tgggcgtggt ggtgatgttc catacccggt actgaatggt
3421 ggttggtgga tggttaatgc cttgtgacgt agtttcccaa cacccgttgt ttgtctcgaa
3481 gggttttacc gtgagggtat tgtttgccgt atccagggaa acccgctggg tgtagggtgg
3541 tctcaccggg ttgccttttt ggggcgggaa ccattccgtg actgttctcc aatcagagca
3601 ttggtgggag gaggagtgcc gccatacaat cacatgccgg gttttgtttt cgtgttctcc
3661 gatggaaatg gcctgggtca gagaaaggag acctgaaaga aggagcagag tagggttgcc
3721 cattttcgcg atggaaaatg gtaccggact gttgtgcgga ggttccattt atacctgtct
3781 gaataaggaa gtataccttt atggtttgtt tgctcagggt gtgccttatc ggtacaggta
3841 ggggtgtggc ttctacagtc acgcacctgt tttaatgggt acaaaggttc ctttgaacca
3901 acctgtatat ataggaccgg gtctcactta gtatatttct tctccggact gcgtacccta
3961 gcggatcaag atcgacagtg tagctcagcc gtaagagcgt cggacttgca ctccggaggt
4021 ccccagatcg aaactgggta ctgccgatct tattgtcggt tagttcattt ttctattttt
4081 tttaacaggg tatttcggga tgtattactt ccacctccgc gtgaccttga tggagcctaa
4141 cttggccgta ttccatgatc tgaaattgac ggtgataaat gcctgggaaa gtttaactgt
4201 tgagatgctg tcccactata gtgtagatta cctgttccga ttggaggagt ttgcgggggt
4261 atattcagct tctatttttt tgcccacgca taaggttgat tggactttct tgaaaagggc
4321 ggtggcttta ctgcgcgaat gtatttggag gagatttgaa tgtacacagg ttccgcgagg
4381 ggtggcttct atttacgcgg tgcgcaatac gtggaccccc tccgccaata gggtggcccg
4441 tcactttgta aaacgcgggg cattggttgg catgcagccc tgtttacacg aatgtaccta
4501 tgagcgggat gcctgttaat gagttgtttt ttctagagcc tcaggaggat gcctttgtat
4561 ttgtgctttg gggccgccgc cccggtttcg attttgtggc gggaagaact cttctgggga
4621 ttcgtggctg cggtcaagag gaggtggcac actgtatatg cacggaccaa tgtggacatt
4681 cagtatccga tggcgtattg tgtcggtatc caatccctgt ctccatgcaa atgtcatgtg
4741 accgtggtgg tgtgtctgac ctttctggat ctgcgcatgt ccgctattaa tgaagccacg
4801 aaaataatgc gcgcgttttt caaaaccttt ttctaccacc acgggaaagt cccgcgtggg
4861 cggtggttta aattgtacag aaatgattgg tgtaagga
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