GenBank-Updates@genbank.bio.net (05/27/91)
LOCUS AEAAAVAR 4898 bp ds-DNA VRL 27-MAY-1991 DEFINITION Avian adenovirus (CELO) DNA encoding VA (virus-associated) RNA and six open reading frames ACCESSION X17217 KEYWORDS unidentified reading frame; virus-associated RNA. SOURCE Avian adenovirus DNA. ORGANISM Avian adenovirus Viridae; ds-DNA nonenveloped viruses; Adenoviridae. REFERENCE 1 (bases 1 to 4898) AUTHORS Akopian,T.A. JOURNAL Unpublished (1989) STANDARD full automatic REFERENCE 2 (bases 1 to 4898) AUTHORS Akopian,T.A., Kruglyak,V.A., Rivkina,M.B., Naroditsky,B.S. and Tikhonenko,T.I. TITLE Sequence of an avian adenovirus (CELO) DNA fragment (0-11.2%) JOURNAL Nucleic Acids Res. 18, 2825-2825 (1990) STANDARD full automatic COMMENT *source: tissue=chicken embryo lethal virus; strain=Phelps; **map: genomic location: 0-11.2%; See <M12738> for overlapping sequences. Data kindly reviewed (12-SEP-1990) by Akopian T.A. From EMBL entry ADAAVAR; dated 24-SEP-1990. FEATURES Location/Qualifiers repeat_unit 1..63 /note="inverted terminal repeat" CDS complement(1443..1847) /note="ORF 6 (AA 1-135)" /codon_start=1847 CDS complement(1955..2803) /note="ORF 5 (AA 1-283)" /codon_start=2803 CDS complement(2806..3768) /note="ORF 4 (AA 1-321)" /codon_start=3768 misc_feature 3964..4055 /note="VA RNA" CDS 4100..4516 /note="ORF 2 (AA 1-139)" /codon_start=4100 CDS complement(4519..>4898) /note="ORF 3 (127 AA)" /codon_start=4898 CDS 4549..>4898 /note="ORF 1 (116 AA)" /codon_start=4549 BASE COUNT 1123 a 1031 c 1243 g 1501 t ORIGIN 1 gatgatgtat aataacctca aaaactaacg cagtcataac cggccataac cgcagcgtgt 61 cgctatacgc aaaatagttt tatgacgcat aataaaacca cacccataaa tatgaatgat 121 atcataaatt agtttattga tttatttgtt ttctaaccaa tacgaatacg aatcttgaca 181 ggaacagaca aatagcttct gggtatcaca gtaggctgac gtcactcggt ctccatttaa 241 atacacgcag tctccgcctc cccgaatttc atacctgtat gcaaattaac aggttacttc 301 cgggttttca ctcccggttc aacttccgca tacgtcacat cccggatgtg acgtataaca 361 tgactcacca tggtacgtaa tcatcgtacg atgcatccac ccaatcagct ccgtccttcg 421 acttcctggt tacgcccagc cagttagttc ctgttccgca ttggcgcaga aggaactcct 481 gtaaagggtc tccgttaatt tttgtatttt tcggggaatt aggagtttcc tggaatttaa 541 ctttttacct tttcctcttc ggaacgcgga actgctagct ccgcctcttg ctgtctacaa 601 aatttttcgg cttcactcca attggactct gactccgaaa agtagtagca cttgctttga 661 aatccgatcc agtctcgcgg gcatactacg tcaaactccg gaaggcggtc gcaacctatc 721 gggggcagca ttatggtgag tgaccgtttt tttagacatg ccttttctta cgtcacaata 781 cttacgccca atgattgcta tggtgatggt ggcggttatg acacagcata ttatgcaaat 841 gactggaatc cagatccacc tatgggaggg ctcctttaag atgattcttt ttttgtttct 901 tctggtgcgt tccggtattc cgtcttctat actgacgtca cagaatgttc cgagaagctt 961 ttctaattgg tcggttattc tctgccgcac ttcaggggta tttgcatata ggtaaatgaa 1021 caatatgcaa agcactccta agattataat gcccgcaatg tatcctgtat atgcgcactc 1081 cgctcctata aataattaca gaggtttctt aatgtgttca gttatattct atataatgtc 1141 tatagagggc gctacttact ctctgatggt tcggcggtgt ccatacttat tgcactggag 1201 ttttttgaga cttgattgga tgccgtacat gaatacatta cccctaaagg tccaacgagc 1261 atgctctgat tttcgtaccc gactatgatt gggtcggtat aattccaatg ccaggagaca 1321 ttgccgtagg aaccggccgg tagatggcag gatatattgg tgaaagtttt cccgttgatt 1381 tgcatagtgg ttcccttgac ttcagggcgt ggaatcgggt ctggataatt aatgctctat 1441 tagataggtg atattaatgc atattgtaaa tatgtatata atgacatacc ttgaacaatc 1501 actttgaagt tgtccgtgtg ttccgtgcca tcattttctt cctggtggag tgagtaggtt 1561 ccgctgtcct cgtagctggc attatgaatg gttaagttat gtttggtggg gttaaactcg 1621 gatcgatttt ggaaaccgtt atcgggaaat ttgatttcta attggttagt ggatgacatt 1681 tcggctatca caatttttag atttccaaac cgccattcaa atttgtattg ccctttctgt 1741 ttagccccca cacccaattc tatactgccc cctttcggag cgtatagagt aggatggtcc 1801 gcagcgaggg tgacccccac caacagaact actgtgagaa gtagcattgt tccggtgtgg 1861 gtatctgtct aattttccat tccctatata tacctgtgtg aatgaggaag cacctgagaa 1921 aagtttccat gacgcacact gctttattgt tttatatcat ttcggaattt ccccgcccgt 1981 ttacattgag ctgacgtagg caacacaaga ccgcaattac cgcgataagc aaacagctac 2041 aaatggcaat tgttctagaa atagttttat ggatatccag gtgtgctacg attggtggat 2101 tctcggagac tgtaaagttt atggtgaggg ttaggtttgt ttgctgatca atgacgcatt 2161 ggaaaatccc ggcatctgtt atcagcacag ggtggagagt gagggtgttg tttccgggat 2221 caaagtccat gtttgcagta taggccggtc ctttgtttat tgttctgttg gacaatgccc 2281 agctgataat gagtttcggt tccgcattct ccagccgcac ccatcgtgta taattaccgt 2341 gttcaaatac ctgtccttgt aaggtaaaag tatttccagc ccaagtgtag gcgtggtgta 2401 tcgattgtcc cagcggttgt acagttatca gataggtggc gttgtgtccc gtttcggaga 2461 tcacagtgta caggttagtt cccgcattct tcttggtggt cgtgaggctg attgtacggg 2521 tggtcgtatt ggcgcgtgtt ccttccagga tgatgtcatt catatagagg gtggtctcat 2581 ttccatatat gcccataggg aaatggatgg tttccccttc aaagtacatt tgccggaatg 2641 tacttatatg ggacgctagg aggaggagca gaacaagtgg tctggggtcc atcgcggctc 2701 ggtgtgtatt gaggaagggg ctatcaccat atataggtat ggatgaatga cacagacacg 2761 tacttatgtg cgtcacagct tttttattac gtttgtcaat cattaagttt cgcaatcatc 2821 atcgggacct ttcaatatgt gtattgttac atggggttgt ccggggattt ccagttcaat 2881 gattggatcg ggaacacaga gcctatctct gaagtaccac ccaataaggg cgggtataac 2941 agtcaggatg caaagggcaa gtccaaccca tagggcagta cttcgagcat ccgctcggac 3001 acgtggtatg ggcgtgggct tgctggcagg tgtctctgcg gtagcttctt cttttttctc 3061 gatgggcgtg acttctactc ggaaggtgtg gacggatacc tggtcgaggt tcaccgtgga 3121 cttgtaggtg ccgctgtcgg tggtcttcgc gccttttaag gttagtgtgt ttttaccggg 3181 gttaaaggta actctccctt ggtagcttgc gtacacaata gtagagttaa tggagagata 3241 gtattggagg atgaactggg gcgtgacatc cttgatgaat tcccattcga taatactcat 3301 ggtttcggac acaggtccgt ataaggtaaa gtcctccccc tcccgaacag ttattttggt 3361 aatgttgatt gtctgtatgg tgggcgtggt ggtgatgttc catacccggt actgaatggt 3421 ggttggtgga tggttaatgc cttgtgacgt agtttcccaa cacccgttgt ttgtctcgaa 3481 gggttttacc gtgagggtat tgtttgccgt atccagggaa acccgctggg tgtagggtgg 3541 tctcaccggg ttgccttttt ggggcgggaa ccattccgtg actgttctcc aatcagagca 3601 ttggtgggag gaggagtgcc gccatacaat cacatgccgg gttttgtttt cgtgttctcc 3661 gatggaaatg gcctgggtca gagaaaggag acctgaaaga aggagcagag tagggttgcc 3721 cattttcgcg atggaaaatg gtaccggact gttgtgcgga ggttccattt atacctgtct 3781 gaataaggaa gtataccttt atggtttgtt tgctcagggt gtgccttatc ggtacaggta 3841 ggggtgtggc ttctacagtc acgcacctgt tttaatgggt acaaaggttc ctttgaacca 3901 acctgtatat ataggaccgg gtctcactta gtatatttct tctccggact gcgtacccta 3961 gcggatcaag atcgacagtg tagctcagcc gtaagagcgt cggacttgca ctccggaggt 4021 ccccagatcg aaactgggta ctgccgatct tattgtcggt tagttcattt ttctattttt 4081 tttaacaggg tatttcggga tgtattactt ccacctccgc gtgaccttga tggagcctaa 4141 cttggccgta ttccatgatc tgaaattgac ggtgataaat gcctgggaaa gtttaactgt 4201 tgagatgctg tcccactata gtgtagatta cctgttccga ttggaggagt ttgcgggggt 4261 atattcagct tctatttttt tgcccacgca taaggttgat tggactttct tgaaaagggc 4321 ggtggcttta ctgcgcgaat gtatttggag gagatttgaa tgtacacagg ttccgcgagg 4381 ggtggcttct atttacgcgg tgcgcaatac gtggaccccc tccgccaata gggtggcccg 4441 tcactttgta aaacgcgggg cattggttgg catgcagccc tgtttacacg aatgtaccta 4501 tgagcgggat gcctgttaat gagttgtttt ttctagagcc tcaggaggat gcctttgtat 4561 ttgtgctttg gggccgccgc cccggtttcg attttgtggc gggaagaact cttctgggga 4621 ttcgtggctg cggtcaagag gaggtggcac actgtatatg cacggaccaa tgtggacatt 4681 cagtatccga tggcgtattg tgtcggtatc caatccctgt ctccatgcaa atgtcatgtg 4741 accgtggtgg tgtgtctgac ctttctggat ctgcgcatgt ccgctattaa tgaagccacg 4801 aaaataatgc gcgcgttttt caaaaccttt ttctaccacc acgggaaagt cccgcgtggg 4861 cggtggttta aattgtacag aaatgattgg tgtaagga //