GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MBRBMV1 3234 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Brome mosaic virus (BMV) RNA1 sequence
ACCESSION X02380
KEYWORDS .
SOURCE Brome mosaic virus RNA.
ORGANISM Brome mosaic virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Bromovirus.
REFERENCE 1 (bases 1 to 3234)
AUTHORS Ahlquist,P., Dasgupta,R. and Kaesberg,P.
TITLE Nucleotide sequence of the brome mosaic virus genome and its
implications for viral replication
JOURNAL J. Mol. Biol. 172, 369-383 (1984)
STANDARD full automatic
COMMENT SWISS-PROT; P03588; V1A$BMV.
Data kindly reviewed (07-MAR-1986) by P. Ahlquist
From EMBL entry BRBMV1; dated 06-JUL-1989.
FEATURES Location/Qualifiers
misc_feature 1..42
/note="region of 96% homology to BMV RNA2"
misc_RNA 1..1
/note="pot. cap site"
CDS 75..2957
/note="RNA1 translation product aa 1-961"
/codon_start=75
misc_feature 3042..3234
/note="193 bp region of common secondary structure of all
BMV RNAs"
BASE COUNT 827 a 680 c 848 g 879 t
ORIGIN
1 gtagaccacg gaacgaggtt caatcccttg tcgaccacgg ttctgctact tgttctttgt
61 ttttcaccaa caaaatgtca agttctatcg atttgctgaa gttgattgct gagaagggtg
121 ctgacagcca gagtgcccaa gacatcgtag acaatcaggt tgcgcaacag ttatctgcgc
181 agattgaata cgcgaaaagg tctaagaaaa tcaacgttcg caataagctc tctattgagg
241 aggctgacgc cttccgtgac cgttatggtg gtgcctttga cttaaatttg actcagcagt
301 atcatgcgcc ccatagcctg gctggtgctc tgcgtgtagc ggagcattat gactgtctcg
361 acagttttcc ccctgaagac cccgttatag atttcggagg gtcttggtgg catcactttt
421 caagaaggga taaaagggtg cacagttgtt gtcctgtgtt gggtgttaga gacgctgccc
481 gacatgagga gaggatgtgc cgcatgcgaa aaattttgca agaaagcgat gatttcgatg
541 aagtcccgaa cttttgtctt aaccgagctc aagattgtga tgtccaagct gattgggcta
601 tctgtatcca cggcggttat gatatgggct tccaaggtct gtgtgacgcc atgcattcgc
661 atggagtacg cgtactacgt ggtaccgtta tgttcgacgg cgccatgttg tttgaccgcg
721 agggttttct tcccttgctt aaatgtcact ggcaacgtga cgggtcaggc gcggatgagg
781 tgatcaaatt cgattttgaa aatgaaagca cattatctta catccacgga tggcaagatt
841 tgggctcatt tttcaccgag tcggtgcatt gcatcgatgg aaccacctat ctgttggagc
901 gcgaaatgct gaaatgtaac atcatgacct ataagatcat cgctacaaat ttacgctgcc
961 cccgggagac actacgtcac tgtgtatggt ttgaagacat atctaagtac gtaggggtct
1021 caatacctga agactggagt ctcaatcgct ggaaatgtgt gcgcgtcgcc aaaaccacag
1081 tgagagaggt agaggagata gctttcagat gtttcaagga aagtaaagaa tggactgaga
1141 acatgaaagc tgtcgcatct atcttatccg ccaagtcgtc gactgttatt attaacggtc
1201 aggctatcat ggctggtgag cgcttagaca ttgaagatta tcatctagtg gcctttgctt
1261 tgactttgaa tctgtatcaa aagtacgaaa agcttacggc cctccgcgat gggatggaat
1321 ggaaaggttg gtgccatcac ttcaaaacta ggttttggtg gggtggagat tcatccaggg
1381 cgaaagtagg atggctgaga acattggcta gcagatttcc cctactacgt ctggattctt
1441 atgcggacag ttttaagttt ctgactcgtc tctcaaacgt tgaagaattt gagcaagatt
1501 ctgtaccgat atcacgtttg agaacgtttt ggactgaaga ggacttattc gaccggctgg
1561 agcatgaagt gcagacagcc aagaccaagc gctcgaagaa gaaggcgaaa gtcccgccag
1621 ctgctgagat acctcaggag gagtttcatg atgcccctga gagttcgagc cctgagtccg
1681 tcagtgatga cgttaaaccg gtgactgatg tggtcccgga tgccgaggtg tctgttgagg
1741 taccaacgga ccctcgtggc atatctagac acggagccat gaaggaattt gtgcgttatt
1801 gtaagagatt acataacaac tccgagtcta atcttcgtca cctatgggac atttccggcg
1861 gtcgcggaag tgagatcgca aataagagca tctttgagac ctaccatcgc atagacgata
1921 tggtgaatgt ccatttggcc aacggtaact ggttgtatcc taaaaaatac gattacactg
1981 ttggatataa tgagcatggt ttaggtccga agcacgcaga tgaaacgtac attgttgata
2041 aaacatgtgc atgctctaac ttgagggaca ttgcagaagc tagcgccaaa gtttctgtcc
2101 ctacatgcga tatttccatg gttgatggag ttgcgggatg cggtaaaacc actgccataa
2161 aagatgcatt ccgtatggga gaggacctaa ttgtgacggc gaatcgtaaa tcggccgagg
2221 acgtcaggat ggctttattc cctgacactt ataattccaa ggtagctttg gacgttgtgc
2281 gcaccgcgga ttctgcgatc atgcacggtg taccgtcctg tcataggctg cttgttgatg
2341 aggctggttt actacattat ggtcaactcc tggtggtggc tgctctgtct aaatgttcac
2401 aagttcttgc ctttggggac acagagcaga tttcgttcaa gtctcgtgac gcgggtttta
2461 aattgctcca cggtaatctg caatatgatc gccgtgacgt tgttcacaag acttaccggt
2521 gtccgcaaga tgttatcgct gctgttaatc tgctgaagcg taaatgcggt aatagggaca
2581 cgaagtatca atcctggaca tctgagtcca aagtttctag aagtctcacg aagcgtcgta
2641 ttacttctgg tttgcaggtc actattgatc cgaacagaac gtatcttacg atgactcaag
2701 ctgataaagc ggcccttcaa acgagggcta aggattttcc cgtgagcaag gactggattg
2761 atggacacat aaaaacagta cacgaagcgc aagggatctc tgttgacaac gtcactttgg
2821 ttcggcttaa gtcgaccaaa tgtgatttgt ttaaacatga ggagtactgt ttggttgcct
2881 taacacgaca caagaagtcc tttgagtatt gctttaacgg cgagctcgct ggtgatttga
2941 tctttaattg tgttaagtga tgcgcttgtc tctgtgtgag acctctgctc gaggagagcc
3001 ctgttccagg taggaacgtt gtggtctaac tcaagactag ctgaatcggt gctataaccg
3061 atagtcgtgg ttgacacgca gacctcttac aagagtgtct aggcgccttt gagagttact
3121 ctttgctctc ttcggaagaa cccttagggg ttcgtgcatg ggcttgcata gcaagtctta
3181 gaatgcgggt gtcgtacagt gttgaaaaac actgtaaatc tctaaaagag acca
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MBRBMV2 2865 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Brome mosaic virus (BMV) RNA2
ACCESSION X01678
KEYWORDS .
SOURCE Brome mosaic virus RNA.
ORGANISM Brome mosaic virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Bromovirus.
REFERENCE 1 (bases 1 to 2865)
AUTHORS Ahlquist,P., Dasgupta,R. and Kaesberg,P.
TITLE Nucleotide sequence of the brome mosaic virus genome and its
implications for viral replication
JOURNAL J. Mol. Biol. 172, 369-383 (1984)
STANDARD full automatic
COMMENT SWISS-PROT; P03594; V2A$BMV.
Data kindly reviewed (07-MAR-1986) by P. Ahlquist
From EMBL entry BRBMV2; dated 06-JUL-1989.
FEATURES Location/Qualifiers
misc_feature 1..42
/note="region of 96% homology to BMV RNA1"
misc_RNA 1..1
/note="pot. cap site"
CDS 104..2569
/note="pot. BMV RNA2 translation product (aa 1-822)"
/codon_start=104
repeat_region 2606..2640
/note="imperfect direct repeat 1"
repeat_region 2642..2680
/note="imperfect direct repeat 1'"
misc_feature 2763..2865
/note="193 bp region of common secondary structure of all
BMV RNAs"
BASE COUNT 774 a 603 c 678 g 810 t
ORIGIN
1 gtaaaccacg gaacgaggtt caatcccttg tcgacccacg gtttgcgcaa cacacatctg
61 accttgttgt tgttgtgtgc ttgttctttc tactatcacc aagatgtctt cgaaaacctg
121 ggatgatgat ttcgttcgcc aggtcccgtc tttccaatgg atcatagatc aatccttaga
181 agacgaggtg gaggctgcta gccttcaggt gcaggagccg gcagacggag ttgccattga
241 cggatctctc gcgagtttta aattagctat agcgcccttg gagataggag gggtattcga
301 tccccctttt gaccgagtgc gctggggctc tatttgcgac accgtccaac aaatggttca
361 acagttcacc gatagaccgc tgattcctca agctgaaatg gcacggatgt tatatcttga
421 cattccgggc tctttcgtgc tcgaagatga aattgatgac tggtatcccg aggatactag
481 tgatggttac ggtgtatcgt ttgccgccga tgaagatcat gcgagcgatc taaaactcgc
541 cagtgattcc tcgaactgtg aaattgagga agttcgtgtt actggagata cccccaagga
601 gctgaccctt ggagataggt acatgggcat tgatgaagag tttcagacta ctaatactga
661 ttacgacatc actcttcaaa tcatgaaccc tattgaacat agggtttcgc gtgttattga
721 tacacactgc catccagata accctgacat ctctactggg ccaatttata tggagagagt
781 cagccttgct agaacagaag cgaccagtca ttccatactg ccaacccatg cttatttcga
841 tgattcgtac catcaagccc ttgttgaaaa tggtgattat tccatggact ttgataggat
901 cagacttaag caaagtgatg tagactggta tagggacccc gataaatatt ttcaaccaaa
961 aatgaatatc gggagtgctc agcgaagagt tggtactcag aaagaagtct taaccgcact
1021 caaaaagcga aacgcggacg ttccagaaat gggagacgcg attaacatga aggacactgc
1081 gaaagctata gcaaagcgct ttcgtagcac attccttaat gttgacggtg aagactgtct
1141 gagagcttct atggatgtca tgactaaatg tcttgagtac cataagaagt ggggtaagca
1201 catggacttg caaggtgtga atgtggcagc agagactgat ttatgtcggt accagcatat
1261 gctgaagtct gacgtaaaac ctgttgtaac tgacaccctt cacttggaac gagcagtagc
1321 agctactata acatttcata gtaaaggtgt gactagtaat ttttcaccct ttttcactgc
1381 ttgtttcgag aagttatcac tggccctgaa atccaggttc attgtgccta tcggaaagat
1441 atcctctctg gagcttaaga atgtccgctt gaataacaga tactttcttg aagcggacct
1501 aagcaaattt gataaatctc agggtgagct gcacctagag tttcagagag agatactcct
1561 tgcgctgggc tttccagcgc cgctgacgaa ttggtggtct gattttcatc gcgattctta
1621 tttatcagac cctcatgcca aggtgggaat gtccgtttcc ttccaacgca gaactggtga
1681 cgcgtttaca tatttcggta atactcttgt cactatggct atgattgcat atgcctctga
1741 tctaagtgac tgtgactgtg caatattttc aggagatgat tctttaatca tctctaaagt
1801 taagccagtc ctggataccg atatgtttac gtctctcttc aatatggaga taaaagtcat
1861 ggaccctagt gtgccctacg tttgtagtaa gtttctcgtc gaaactgaaa tgggcaattt
1921 ggtgtctgta ccagatcctc tgagagagat ccagcgctta gctaagcgaa agattctgcg
1981 tgatgaacag atgctcagag cacatttcgt ttccttctgt gatcgaatga agtttattaa
2041 tcaacttgat gagaagatga ttacgacgct ctgtcatttt gtttatctga aatatgggaa
2101 agaaaaacct tggattttcg aggaggttag agctgctctt gcggcttttt ctttatactc
2161 cgagaatttc ctgaggttct ctgattgcta ctgtaccgaa ggcatcagag tttatcagat
2221 gagcgatcct gtatgtaagt tcaaacgcac cacggaagag cgtaaaactg atggtgactg
2281 gtttcacaac tggaagaatc caaagtttcc tggtgtgtta gacaaagtct acagaaccat
2341 tggaatttat tcctcggact gtagtactaa ggagctccct gtcaaacgga tcggacgttt
2401 acatgaggcc cttgagcgtg agtcactcaa attagctaat gatcgtagga ccacacaacg
2461 cttgaaaaag aaggtcgacg attacgctac cggtagagga ggcctaacgt cagttgatgc
2521 tttgctcgtg aagtcccatt gtgagacttt taagccctct gatctgagat gatcggttct
2581 atgatatatg aacctaagct gtgaacagcc ctttggttaa ggttaaaaac tcctggtcag
2641 gcagaccact ttggctaagt ttaaaagctt gttgaatcag tacaataact gatagtcgtg
2701 gttgacacgc agacctctta caagagtgtc taggtgcctt tgagagttac tctttgctct
2761 cttcggaaga acccttaggg gttcgtgcat gggcttgcat agcaagtctt agaatgcggg
2821 tgccgtacag tgttgaaaaa cactgtaaat ctctaaaaga gacca
//