GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MCACM4184 2539 bp ds-DNA VRL 28-MAY-1991 DEFINITION Cauliflower mosaic virus (CM4184) R, U5 and flanking regions ACCESSION X02606 KEYWORDS long terminal repeat. SOURCE Cauliflower mosaic virus DNA. ORGANISM Cauliflower mosaic virus Viridae; ds-DNA nonenveloped viruses; Caulimovirus. REFERENCE 1 (bases 1 to 2539; 1 to 2539) AUTHORS Dixon,L., Nyffenegger,T., Delley,G. and Hohn,T. JOURNAL Unpublished (1986) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Dixon,L., Nyffenegger,T., Delley,G., Martinez-Izquierdo,J. and Hohn,T. TITLE Evidence for replicative recombination in cauliflower mosaic virus JOURNAL Virology 150, 463-468 (1986) STANDARD full staff_review COMMENT From EMBL entry CACM4184; dated 02-JUL-1986. FEATURES Location/Qualifiers misc_feature <1..428 /note="sequence corresponding to U3 region fragment" misc_feature 429..625 /note="sequence corresponding to R region" misc_feature 626..1028 /note="sequence corresponding to U5 region" BASE COUNT 905 a 495 c 474 g 665 t ORIGIN 1 aaaatcttcg tcaacatggt ggagcacgac actctcgtct actccaagaa tatcaaagat 61 acagtctcag aagaccaaag ggctattgag acgtttcaac aaagggtaat atcgggaaac 121 ctcctcggat tccattgccc agctatctgt cacttcatca aaaggacagt agaaaaggaa 181 ggtggcacct acaaatgcca tcattgcgat aaaggaaagg ctatcattca agatgcctct 241 gccgacagtg gtcccaaaga tggaccccca cccacgagga gcatcgtgga aaaagaagac 301 gttccaacca cgtcttcaaa gcaagtggat tgatgtgata tctccactga cgtaagggaa 361 tgacgcacaa tcccactatc cttcgcaaga cccttcctct atataaggaa gttcatttca 421 tttggagagg acacgctgaa atcaccagtc tctctctaca aatctatctc tctctatttt 481 ctccataata atgtgtgagt agttcccaga taagggaatt agggttctta tagggtttcg 541 ctcatgtgtt gagcatataa gaaaccctta gtatgtattt gtatttgtaa aatacttcta 601 tcaataaaat ttctaattcc taaaaccaaa atccagtact aaaatccaga tctcctaaag 661 tcccaataga tctttgtggt gaatataaac cagacacgag acgactaaac ctggagccca 721 gatgccgctt gaagctagaa gtaccgctta ggcaggaggc cgttagggaa aagatgctaa 781 ggcagggttg gttacgttga ctcccccgta ggtttggttt aaatatcatg aagtggacgg 841 aaggaaggag gaagacatgg aaggataagg ttgcaggccc tgtgcaaggt aagacgatgg 901 aaatttgata gaggtacgtt actatactta tactatacgc taagggaatg cttgtattta 961 ccctatatac cctagtaacc ccttatcgat ttaaagaaat aatccgcata agcccccgct 1021 taaaaaattg gtatcagagc catgaatcgg tttaaaaacc aaactcaaga gggtaaaacc 1081 tcaccaaaat acgaaagagt tcttaactct aaagataaaa gatctttcaa gatcaaaact 1141 agttccctca caccggtgac cgacaggttt accaccgtaa ggtttcagaa caacatcgaa 1201 tgcgtttacg ccaacttcga ctctcagctc aagtcgtcgt acgatggtag atctaaaaag 1261 atcaagaatc taagccttaa aaatcttaga tgttatgaag ccttcctcag gaagtacctt 1321 ctggaacaat aaatctctct gagaatagta ctctaacgag tatccacagg aaaaataatc 1381 ttctgtgttg agatggattt gtatccagaa gaaaataccc aaagcgagca atcgcagaat 1441 tctgaaaata atatgcaaat atttaagtca gaaaattcgg atggattctc ctccgatcta 1501 atgatctcaa acgatcaatt aaaaaatatc tctaagaccc aattaacttt ggagaaagaa 1561 aagatattca aaatgcctaa cgttttatct caagttatga aaaaagcgtt tagcaggaaa 1621 aacgagattc tttactgcgt ctcgacaaaa gaattatcag tggacattca cgatgccaca 1681 ggtaaggtat atctcccttt aatcactaga gaggagataa ataaaagact ttctagctta 1741 aaacctgaag tcagaaagat catgtccatg gttcatcttg gagcggtcaa aatattgctt 1801 aaagctcaat ttcgaaatgg gattgatacc ccaatcaaaa ttgctttaat cgatgataga 1861 attaattcta gaagagattg ccttctcggt gcagccaaag gtaatctagc atacggtaag 1921 tttatgttta ctgtataccc caagtttgga ataagcctta atacccaaag acttaaccaa 1981 accttaagtc ttattcatga ttttgagaat aaaaatctta tgaataaagg tgataaagtt 2041 atgaccataa cctatatcgt aggatatgca ttaactaata gtcatcatag catagattat 2101 caatcgaatg ctacaattga actagaagac gtatttcaag aaattggaaa tgtccagcaa 2161 tctgactttt gtacaataca aaatgacgaa tgcaattggg ccattgatat agcccaaaac 2221 aaagccttat taggagctaa aacccaatcc caaattggta atagtcttca aataggaaac 2281 agtgcttcat cctctaatac tgaaaatgaa ttagctaggg taagccaaaa catagatctt 2341 ttaaaaaaca aattaaaaga gatctgtgga gaataaaatg agcattacgg gtcaaccgca 2401 tgtttataaa aaggattaaa gaatattatt ggctgaaatg gctaatctta atcaaatcca 2461 gaaagaagtc tctgaaatcc tcagtgacca aaaatccatg aaatcggata taaaagctat 2521 cttagaattg ctaggatcc //
GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MCAVVIG 2283 bp ds-DNA VRL 28-MAY-1991 DEFINITION Cauliflower mosaic virus (CaMV) gene VI for viroplasmin ACCESSION X53860 KEYWORDS unidentified reading frame; viroplasmin. SOURCE Cauliflower mosaic virus DNA. ORGANISM Cauliflower mosaic virus Viridae; ds-DNA nonenveloped viruses; Caulimovirus. REFERENCE 1 (bases 1 to 2283) AUTHORS Volovitch,M. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 2283) AUTHORS Volovitch,M., Modjtahedi,N., Chouikh,Y. and Yot,P. TITLE DNA sequence of gene VI of cauliflower mosaic virus PV147 JOURNAL Nucleic Acids Res. 18, 5297-5297 (1990) STANDARD full automatic COMMENT Data kindly reviewed (19-Sep-1990) by Volovitch M. *source: strain=PV147; **map: map position=67-95; From EMBL entry CMVVIG; dated 15-OCT-1990. FEATURES Location/Qualifiers promoter 286..292 /note="pot. CAAT box" misc_feature 339..1961 /note="unidentified reading frame (541 AA)" promoter 357..363 /note="pot. TATA box" misc_feature 390..392 /note="pot. transcriptional start site" misc_feature 391..391 /note="alt. transcriptional start" misc_feature 392..392 /note="alt. transcriptional start" CDS 402..1961 /note="viroplasmin (AA 1-520)" /codon_start=402 misc_feature 2233..2238 /note="polyA signal" BASE COUNT 773 a 532 c 453 g 525 t ORIGIN 1 aagctttaaa gctgcagaaa ggaattacca cagcaatgac aaagagacat tggcggtaat 61 aaatactata aagaaattca gtatttatct aacccctgtt catttcctga tcagaacaga 121 taatactcat ttcaagagtt ttgttaacct taattacaaa ggtgattcaa aacttggaag 181 aaacatcaga tggcaagcat ggcttagcca ctattcattt gatgttgaac atattaaagg 241 aaccgacaac cactttgcgg acttcctttc aagagaattc aataaggtta attcctagtt 301 gaaatccgaa gataagattc ccacacactt gtggctgata tcaaaaggct actgcctata 361 taaacacatc tctggagact gagaaaatca gacctccaag catggagaac atagaaaaac 421 tcatcatgca agagaaaata ctaatgctag agctcgatct agtaagagca aaaataagct 481 tagcaagagc taacggctct tcgcaacaag gagacctccc tctccaccgt gaaacaccgg 541 taaaagaaga agcagttcat tctgcactgg ccacttttac gccaactcaa gtaaaggcta 601 ttcctgagca aacggctcct ggtaaagaat caacaaatcc gttgatggct agtatcttgc 661 caaaagatat gaacccagtt caaactggga ttaggcttgc agtgccaggg gactttttac 721 gtcctcatca gggaattcca atcccacaaa aaactgacct tagcagcaca gttgctcctc 781 tcagagcaga atcgggtatt caacaccctc atatcaacta ctacgttgtg tataacggtc 841 cacacgccgg tatatacgat gactggggtt gtacaaaggc ggcaacaaac ggcgctcccg 901 gagttgcaca caagaagttt gccactatta cagaggcaag agcagcagct gacgcgtaca 961 caacaagtca gcaaacagac aggttgaact tcatccccaa aggagaagcc caactcaagc 1021 ccaagagctt tgcgaaggcc ttaaccagcc caccaaagca aaaagcccac tggctcacgc 1081 taggaaccaa aaggcccagc ggtgatccag ccccaaaaga gatctccttt gccccggaga 1141 tcaccatgga cgatttcctc tatctctacg atctaggaag aaagttcgac ggagaaggtg 1201 acgataccat gttcaccact gataatgaga agattagcct cttcaatttc agaaagaatg 1261 ctgacccaca gatggttaga gaggcctacg cagcaggtct catcaagacg atctacccga 1321 gtaataatct ccaggagatc aaataccttc ccaagaaggt taaagatgca gtcaaaagat 1381 tcaggactaa ctgcatcaag aacacagaga aagatatatt tctcaagatc agaagtacta 1441 ttccagtatg gacgattcaa ggcttgcttc ataaaccaag gcaagtaata gagattggag 1501 tctctaagaa agtagtccct actgaatcaa aggccatgga gtcaaaaatt cagatcgagg 1561 atctaacaga actcgccgtg aagactggcg aacagtccat acagagtctt ttacgactca 1621 atgacaagaa gaaaatcttc gtcaacatgg tggagcacga cactctcgtc tactccaaga 1681 atatcaaaga tacagtctca gaagaccaaa gggctatgga gacttttcaa caaagggtaa 1741 tatcgggaaa cctcctcgga ttccattgcc cagctatctg tcacttcatc gaaaggacag 1801 tagagaagga aggtggctcc tacaaatgcc atcattgcga taaaggaaag gctatcgttc 1861 aaaatgcctc tgccgacagt ggtcccaaag atggaccccc acccacgagg agcatcgtgg 1921 aaaaagaaga cgttccaacc acgtcttcaa agcaagtgga ttgatgtgac atctccactg 1981 acgtaaggga tgacgcacaa tcccactatc cttcgcaaga cccttcctct atataaggaa 2041 gttcatttca tttggaaaga acacgctaaa atcaccagtc tctctctaca aatctatctc 2101 tctctatttt ctccataata atgtgtgagt agttcccaga taagggaatt agggttctta 2161 tagggtttcg ctcatgtgtt gagcatataa gaaaccctta gtatgtattt gtatttgtaa 2221 aatacttcta tcaataaaat ttctaattcc taaaaccaaa atccagtact aaagtccaga 2281 tct //