GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MCACM4184 2539 bp ds-DNA VRL 28-MAY-1991
DEFINITION Cauliflower mosaic virus (CM4184) R, U5 and flanking regions
ACCESSION X02606
KEYWORDS long terminal repeat.
SOURCE Cauliflower mosaic virus DNA.
ORGANISM Cauliflower mosaic virus
Viridae; ds-DNA nonenveloped viruses; Caulimovirus.
REFERENCE 1 (bases 1 to 2539; 1 to 2539)
AUTHORS Dixon,L., Nyffenegger,T., Delley,G. and Hohn,T.
JOURNAL Unpublished (1986)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Dixon,L., Nyffenegger,T., Delley,G., Martinez-Izquierdo,J. and
Hohn,T.
TITLE Evidence for replicative recombination in cauliflower mosaic virus
JOURNAL Virology 150, 463-468 (1986)
STANDARD full staff_review
COMMENT From EMBL entry CACM4184; dated 02-JUL-1986.
FEATURES Location/Qualifiers
misc_feature <1..428
/note="sequence corresponding to U3 region fragment"
misc_feature 429..625
/note="sequence corresponding to R region"
misc_feature 626..1028
/note="sequence corresponding to U5 region"
BASE COUNT 905 a 495 c 474 g 665 t
ORIGIN
1 aaaatcttcg tcaacatggt ggagcacgac actctcgtct actccaagaa tatcaaagat
61 acagtctcag aagaccaaag ggctattgag acgtttcaac aaagggtaat atcgggaaac
121 ctcctcggat tccattgccc agctatctgt cacttcatca aaaggacagt agaaaaggaa
181 ggtggcacct acaaatgcca tcattgcgat aaaggaaagg ctatcattca agatgcctct
241 gccgacagtg gtcccaaaga tggaccccca cccacgagga gcatcgtgga aaaagaagac
301 gttccaacca cgtcttcaaa gcaagtggat tgatgtgata tctccactga cgtaagggaa
361 tgacgcacaa tcccactatc cttcgcaaga cccttcctct atataaggaa gttcatttca
421 tttggagagg acacgctgaa atcaccagtc tctctctaca aatctatctc tctctatttt
481 ctccataata atgtgtgagt agttcccaga taagggaatt agggttctta tagggtttcg
541 ctcatgtgtt gagcatataa gaaaccctta gtatgtattt gtatttgtaa aatacttcta
601 tcaataaaat ttctaattcc taaaaccaaa atccagtact aaaatccaga tctcctaaag
661 tcccaataga tctttgtggt gaatataaac cagacacgag acgactaaac ctggagccca
721 gatgccgctt gaagctagaa gtaccgctta ggcaggaggc cgttagggaa aagatgctaa
781 ggcagggttg gttacgttga ctcccccgta ggtttggttt aaatatcatg aagtggacgg
841 aaggaaggag gaagacatgg aaggataagg ttgcaggccc tgtgcaaggt aagacgatgg
901 aaatttgata gaggtacgtt actatactta tactatacgc taagggaatg cttgtattta
961 ccctatatac cctagtaacc ccttatcgat ttaaagaaat aatccgcata agcccccgct
1021 taaaaaattg gtatcagagc catgaatcgg tttaaaaacc aaactcaaga gggtaaaacc
1081 tcaccaaaat acgaaagagt tcttaactct aaagataaaa gatctttcaa gatcaaaact
1141 agttccctca caccggtgac cgacaggttt accaccgtaa ggtttcagaa caacatcgaa
1201 tgcgtttacg ccaacttcga ctctcagctc aagtcgtcgt acgatggtag atctaaaaag
1261 atcaagaatc taagccttaa aaatcttaga tgttatgaag ccttcctcag gaagtacctt
1321 ctggaacaat aaatctctct gagaatagta ctctaacgag tatccacagg aaaaataatc
1381 ttctgtgttg agatggattt gtatccagaa gaaaataccc aaagcgagca atcgcagaat
1441 tctgaaaata atatgcaaat atttaagtca gaaaattcgg atggattctc ctccgatcta
1501 atgatctcaa acgatcaatt aaaaaatatc tctaagaccc aattaacttt ggagaaagaa
1561 aagatattca aaatgcctaa cgttttatct caagttatga aaaaagcgtt tagcaggaaa
1621 aacgagattc tttactgcgt ctcgacaaaa gaattatcag tggacattca cgatgccaca
1681 ggtaaggtat atctcccttt aatcactaga gaggagataa ataaaagact ttctagctta
1741 aaacctgaag tcagaaagat catgtccatg gttcatcttg gagcggtcaa aatattgctt
1801 aaagctcaat ttcgaaatgg gattgatacc ccaatcaaaa ttgctttaat cgatgataga
1861 attaattcta gaagagattg ccttctcggt gcagccaaag gtaatctagc atacggtaag
1921 tttatgttta ctgtataccc caagtttgga ataagcctta atacccaaag acttaaccaa
1981 accttaagtc ttattcatga ttttgagaat aaaaatctta tgaataaagg tgataaagtt
2041 atgaccataa cctatatcgt aggatatgca ttaactaata gtcatcatag catagattat
2101 caatcgaatg ctacaattga actagaagac gtatttcaag aaattggaaa tgtccagcaa
2161 tctgactttt gtacaataca aaatgacgaa tgcaattggg ccattgatat agcccaaaac
2221 aaagccttat taggagctaa aacccaatcc caaattggta atagtcttca aataggaaac
2281 agtgcttcat cctctaatac tgaaaatgaa ttagctaggg taagccaaaa catagatctt
2341 ttaaaaaaca aattaaaaga gatctgtgga gaataaaatg agcattacgg gtcaaccgca
2401 tgtttataaa aaggattaaa gaatattatt ggctgaaatg gctaatctta atcaaatcca
2461 gaaagaagtc tctgaaatcc tcagtgacca aaaatccatg aaatcggata taaaagctat
2521 cttagaattg ctaggatcc
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MCAVVIG 2283 bp ds-DNA VRL 28-MAY-1991
DEFINITION Cauliflower mosaic virus (CaMV) gene VI for viroplasmin
ACCESSION X53860
KEYWORDS unidentified reading frame; viroplasmin.
SOURCE Cauliflower mosaic virus DNA.
ORGANISM Cauliflower mosaic virus
Viridae; ds-DNA nonenveloped viruses; Caulimovirus.
REFERENCE 1 (bases 1 to 2283)
AUTHORS Volovitch,M.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 2283)
AUTHORS Volovitch,M., Modjtahedi,N., Chouikh,Y. and Yot,P.
TITLE DNA sequence of gene VI of cauliflower mosaic virus PV147
JOURNAL Nucleic Acids Res. 18, 5297-5297 (1990)
STANDARD full automatic
COMMENT Data kindly reviewed (19-Sep-1990) by Volovitch M.
*source: strain=PV147; **map: map position=67-95;
From EMBL entry CMVVIG; dated 15-OCT-1990.
FEATURES Location/Qualifiers
promoter 286..292
/note="pot. CAAT box"
misc_feature 339..1961
/note="unidentified reading frame (541 AA)"
promoter 357..363
/note="pot. TATA box"
misc_feature 390..392
/note="pot. transcriptional start site"
misc_feature 391..391
/note="alt. transcriptional start"
misc_feature 392..392
/note="alt. transcriptional start"
CDS 402..1961
/note="viroplasmin (AA 1-520)"
/codon_start=402
misc_feature 2233..2238
/note="polyA signal"
BASE COUNT 773 a 532 c 453 g 525 t
ORIGIN
1 aagctttaaa gctgcagaaa ggaattacca cagcaatgac aaagagacat tggcggtaat
61 aaatactata aagaaattca gtatttatct aacccctgtt catttcctga tcagaacaga
121 taatactcat ttcaagagtt ttgttaacct taattacaaa ggtgattcaa aacttggaag
181 aaacatcaga tggcaagcat ggcttagcca ctattcattt gatgttgaac atattaaagg
241 aaccgacaac cactttgcgg acttcctttc aagagaattc aataaggtta attcctagtt
301 gaaatccgaa gataagattc ccacacactt gtggctgata tcaaaaggct actgcctata
361 taaacacatc tctggagact gagaaaatca gacctccaag catggagaac atagaaaaac
421 tcatcatgca agagaaaata ctaatgctag agctcgatct agtaagagca aaaataagct
481 tagcaagagc taacggctct tcgcaacaag gagacctccc tctccaccgt gaaacaccgg
541 taaaagaaga agcagttcat tctgcactgg ccacttttac gccaactcaa gtaaaggcta
601 ttcctgagca aacggctcct ggtaaagaat caacaaatcc gttgatggct agtatcttgc
661 caaaagatat gaacccagtt caaactggga ttaggcttgc agtgccaggg gactttttac
721 gtcctcatca gggaattcca atcccacaaa aaactgacct tagcagcaca gttgctcctc
781 tcagagcaga atcgggtatt caacaccctc atatcaacta ctacgttgtg tataacggtc
841 cacacgccgg tatatacgat gactggggtt gtacaaaggc ggcaacaaac ggcgctcccg
901 gagttgcaca caagaagttt gccactatta cagaggcaag agcagcagct gacgcgtaca
961 caacaagtca gcaaacagac aggttgaact tcatccccaa aggagaagcc caactcaagc
1021 ccaagagctt tgcgaaggcc ttaaccagcc caccaaagca aaaagcccac tggctcacgc
1081 taggaaccaa aaggcccagc ggtgatccag ccccaaaaga gatctccttt gccccggaga
1141 tcaccatgga cgatttcctc tatctctacg atctaggaag aaagttcgac ggagaaggtg
1201 acgataccat gttcaccact gataatgaga agattagcct cttcaatttc agaaagaatg
1261 ctgacccaca gatggttaga gaggcctacg cagcaggtct catcaagacg atctacccga
1321 gtaataatct ccaggagatc aaataccttc ccaagaaggt taaagatgca gtcaaaagat
1381 tcaggactaa ctgcatcaag aacacagaga aagatatatt tctcaagatc agaagtacta
1441 ttccagtatg gacgattcaa ggcttgcttc ataaaccaag gcaagtaata gagattggag
1501 tctctaagaa agtagtccct actgaatcaa aggccatgga gtcaaaaatt cagatcgagg
1561 atctaacaga actcgccgtg aagactggcg aacagtccat acagagtctt ttacgactca
1621 atgacaagaa gaaaatcttc gtcaacatgg tggagcacga cactctcgtc tactccaaga
1681 atatcaaaga tacagtctca gaagaccaaa gggctatgga gacttttcaa caaagggtaa
1741 tatcgggaaa cctcctcgga ttccattgcc cagctatctg tcacttcatc gaaaggacag
1801 tagagaagga aggtggctcc tacaaatgcc atcattgcga taaaggaaag gctatcgttc
1861 aaaatgcctc tgccgacagt ggtcccaaag atggaccccc acccacgagg agcatcgtgg
1921 aaaaagaaga cgttccaacc acgtcttcaa agcaagtgga ttgatgtgac atctccactg
1981 acgtaaggga tgacgcacaa tcccactatc cttcgcaaga cccttcctct atataaggaa
2041 gttcatttca tttggaaaga acacgctaaa atcaccagtc tctctctaca aatctatctc
2101 tctctatttt ctccataata atgtgtgagt agttcccaga taagggaatt agggttctta
2161 tagggtttcg ctcatgtgtt gagcatataa gaaaccctta gtatgtattt gtatttgtaa
2221 aatacttcta tcaataaaat ttctaattcc taaaaccaaa atccagtact aaagtccaga
2281 tct
//