GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS TGETGEVE1 957 bp ss-mRNA VRL 28-MAY-1991
DEFINITION TGEV genomic RNA for E1 matrix protein and nucleocapsid protein
TGEV = Transmissible gastroenteritis virus
ACCESSION X05598
KEYWORDS E1 membrane protein; matrix protein; transmembrane protein.
SOURCE Transmissible gastroenteritis virus RNA.
ORGANISM Transmissible gastroenteritis virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Coronaviridae.
REFERENCE 1 (bases 1 to 957)
AUTHORS Laude,H., Rasschaert,D. and Huet,J.-C.
TITLE Sequence and N-terminal processing of the transmembrane protein E1
of the coronavirus transmissible gastroenteritis virus
JOURNAL J. Gen. Virol. 68, 1687-1693 (1987)
STANDARD full automatic
COMMENT SWISS-PROT; P04135; VME1$CVPPU.
*source: clone= pTG2.15.; strain=Purdue-115;
Data kindly reviewed (28-JAN-1988) by Laude H.
From EMBL entry COTGEVE1; dated 06-JUL-1989.
FEATURES Location/Qualifiers
misc_feature 110..119
/note="transcription initiation consensus sequence"
CDS 121..171
/note="signal peptide (AA -17 to -1)"
/codon_start=121
CDS 172..906
/note="mature E1 matrix protein (AA 1-245)"
/codon_start=172
misc_feature 214..216
/note="pot.N-glycosylation site"
misc_feature 283..285
/note="pot.N-glycosylation site"
misc_feature 871..873
/note="pot.N-glycosylation site"
misc_feature 908..917
/note="transcription initiation consensus sequence"
CDS 922..>957
/note="nucleocapsid protein (AA 1-12)"
/codon_start=922
BASE COUNT 279 a 164 c 213 g 301 t
ORIGIN
1 gcaatttagg aaggacagtt attattgttc cagcgcaaca tgcttacgat gcctataaga
61 attttatgcg aattaaagca tacaaccccg atggagcact ccttgcttga actaaacaaa
121 atgaagattt tgttaatatt agcgtgtgtg attgcatgcg catgtggaga acgctattgt
181 gctatgaaat ccgatacaga tttgtcatgt cgcaatagta cagcgtctga ttgtgagtca
241 tgcttcaacg gaggcgatct tatttggcat cttgcaaact ggaacttcag ctggtctata
301 atattgatcg tttttataac tgtgctacaa tatggaagac ctcaattcag ctggttcgtg
361 tatggcatta aaatgcttat aatgtggcta ttatggcccg ttgttttggc tcttacgatt
421 tttaatgcat actcggaata ccaagtgtcc agatatgtaa tgttcggctt tagtattgca
481 ggtgcaattg ttacatttgt actctggatt atgtattttg taagatccat tcagttgtac
541 agaaggacta actcttggtg gtctttcaac cctgaaacta aagcaattct ttgcgttagt
601 gcattaggaa gaagctatgt gcttcctctc gaaggtgtgc caactggtgt cactctaact
661 ttgctttcag ggaatttgta cgctgaaggg ttcaaaattg cagatggtat gaacatcgac
721 aatttaccaa aatacgtaat ggttgcatta cctagcagga ctattgtcta cacacttgtt
781 ggcaagaagt tgaaagcaag tagtgcgact ggatgggctt actatgtaaa atctaaagct
841 ggtgattact caacagaggc aagaactgat aatttgagtg agcaagaaaa attattacat
901 atggtataac taaacttcta aatggccaac cagggacaac gtgtcagttg gggagat
//