GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS TGETGEVE2 4660 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Transmissible gastroenteritis virus (TGEV) mRNA for protein E2
ACCESSION X05695
KEYWORDS E2 protein; glycoprotein; peplomer protein;
unidentified reading frame.
SOURCE Transmissible gastroenteritis virus RNA.
ORGANISM Transmissible gastroenteritis virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Coronaviridae.
REFERENCE 1 (bases 1 to 4660)
AUTHORS Rasschaert,D. and Laude,H.
TITLE The Predicted Primary Structure of the Peplomer Protein E2 of the
Porcine Coronavirus Transmissible Gastroenteritis Virus
JOURNAL J. Gen. Virol. 68, 1883-1890 (1987)
STANDARD full automatic
COMMENT SWISS-PROT; P07946; VGL2$CVPPU.
*strain= Purdue-15;
From EMBL entry COTGEVE2; dated 06-JUL-1989.
FEATURES Location/Qualifiers
repeat_region 88..97
/note="direct repeat 1"
CDS 121..4461
/note="put. E2 precursor (-16 t0 1431)"
/codon_start=121
CDS 121..168
/note="pot. signal peptide (AA -16 to -1)"
/codon_start=121
CDS 169..4461
/note="put. mature E2 (AA 1-1431)"
/codon_start=169
repeat_region 4552..4561
/note="direct repeat 1"
CDS 4583..>4660
/note="ORF (AA 1-26)"
/codon_start=4583
BASE COUNT 1392 a 799 c 931 g 1538 t
ORIGIN
1 gactatgtaa ttaaagaaaa agaattgaat gaaatggtca tggattacta aggaagggta
61 agttgctcat tagaaataat ggtaagttac taaactttgg taacacttcg ttaacacacc
121 atgaaaaaac tatttgtggt tttggtcgta atgccattga tttatggaga caattttcct
181 tgttctaaat tgactaatag aactataggc aaccagtgga atctcattga aaccttcctt
241 ctaaactata gtagtaggtt accacctaat tcagatgatg tgttaggtga ttattttcct
301 actgtacaac cttggtttaa ttgcattcgc aataatagta atgaccttta tgttacactg
361 gaaaatctta aagcattgta ttgggattat gctacagaaa atatcacttg gaatcacaga
421 caacggttaa acgtagtcgt taatggatac ccatactcca tcacagttac aacaacccgc
481 aattttaatt ctgctgaagg tgctattata tgcatttgta agggctcacc acctactacc
541 accacagaat ctagtttgac ttgcaattgg ggtagtgagt gcaggttaaa ccataagttc
601 cctatatgtc cttctaattc agaggcaaat tgtggtaata tgctgtatgg cctacaatgg
661 tttgcagatg aggttgttgc ttatttacat ggtgctagtt accgtattag ttttgaaaat
721 caatggtctg gcactgtcac atttggtgat atgcgtgcga caacattaga agtcgctggc
781 acgcttgtag acctttggtg gtttaatcct gtttatgatg tcagttatta tagggttaat
841 aataaaaatg gtactaccgt agtttccaat tgcactgatc aatgtgctag ttatgtggct
901 aatgttttta ctacacagcc aggaggtttt ataccatcag attttagttt taataattgg
961 ttccttctaa ctaatagctc cacgttggtt agtggtaaat tagttaccaa acagccgtta
1021 ttagttaatt gcttatggcc agtccctagc tttgaagaag cagcttctac attttgtttt
1081 gagggtgctg gctttgatca atgtaatggt gctgttttaa ataatactgt agacgtcatt
1141 aggttcaacc ttaattttac tacaaatgta caatcaggta agggtgccac agtgttttca
1201 ttgaacacaa cgggtggtgt cactcttgaa atttcatgtt atacagtgag tgactcgagc
1261 tttttcagtt acggtgaaat tccgttcggc gtaactgatg gaccacggta ctgttacgta
1321 cactataatg gcacagctct taagtattta ggaacattac cacctagtgt caaggagatt
1381 gctattagta agtggggcca tttttatatt aatggttaca atttctttag cacatttcct
1441 attgattgta tatcttttaa tttgaccact ggtgatagtg acgttttctg gacaatagct
1501 tacacatcgt acactgaagc attagtacaa gttgaaaaca cagctattac aaaggtgacg
1561 tattgtaata gtcacgttaa taacattaaa tgctctcaaa ttactgctaa tttgaataat
1621 ggattttatc ctgtttcttc aagtgaagtt ggtcttgtca ataagagtgt tgtgttacta
1681 cctagctttt acacacatac cattgttaac ataactattg gtcttggtat gaagcgtagt
1741 ggttatggtc aacccatagc ctcaacatta agtaacatca cactaccaat gcaggatcac
1801 aacaccgatg tgtactgtat tcgttctgac caattttcag tttatgttca ttctacttgc
1861 aaaagtgctt tatgggacaa tatttttaag cgaaactgca cggacgtttt agatgccaca
1921 gctgttataa aaactggtac ttgtcctttc tcatttgata aattgaacaa ttacttaact
1981 tttaacaagt tctgtttgtc gttgagtcct gttggtgcta attgtaagtt tgatgtagct
2041 gcccgtacaa gaaccaatga gcaggttgtt agaagtttgt atgtaatata tgaagaagga
2101 gacaacatag tgggtgtacc gtctgataat agtggtgtgc acgatttgtc agtgctacac
2161 ctagattcct gcacagatta caatatatat ggtagaactg gtgttggtat tattagacaa
2221 actaacagga cgctaattag tggcttatat tacacatcac tatcaggtga tttgttaggt
2281 tttaaaaatg ttagtgatgg tgtcatttac tctgtaacgc catgtgatgt aagcgcacaa
2341 gcagctgtta ttgatggtac catagttggg gctatcactt ccattaacag tgaactgtta
2401 ggtctaacac attggacaac aacacctaat ttttattact actctatata taattacaca
2461 aatgatagga ctcgtggcac tgcaattgac agtaatgatg ttgattgtga acctgtcata
2521 acctattcta acataggtgt ttgtaaaaat ggtgcttttg tttttattaa cgtcacacat
2581 tctgatggag acgtgcaacc aattagcact ggtaatgtca cgatacctac aaactttacc
2641 atatccgtgc aagtcgaata tattcaggtt tacactacac cagtgtcaat agactgttca
2701 agatatgttt gtaatggtaa ccctaggtgt aacaaattgt taacacaata cgtttctgca
2761 tgtcaaacta ttgagcaagc acttgcaatg ggtgccagac ttgaaaacat ggaggttgat
2821 tccatgttgt ttgtttctga aaatgccctt aaattggcat ctgttgaagc attcaatagt
2881 tcagaaactt tagaccctat ttacaaagaa tggcctaata taggtggttc ttggctagaa
2941 ggtctaaaat acatacttcc gtcccataat agcaaacgta agtatcgttc agctatagaa
3001 gacttgcttt ttgataaggt tgtaacatct ggtttaggta cagttgatga agattataaa
3061 cgttgtacag gtggttatga catagctgac ttagtatgtg ctcaatacta taatggcatc
3121 atggtgctac ctggtgtggc taatgctgac aaaatgacta tgtacacagc atcccttgca
3181 ggtggtataa cattaggtgc acttggtgga ggcgccgtgg ctataccttt tgcagtagca
3241 gttcaggcta gacttaatta tgttgctcta caaactgatg tattgaacaa aaaccagcag
3301 attctggcta gtgctttcaa tcaagctatt ggtaacatta cacagtcatt tggtaaggtt
3361 aatgatgcta tacatcaaac atcacgaggt cttgctactg ttgctaaagc attggcaaaa
3421 gtgcaagatg ttgtcaacat acaagggcaa gctttaagcc acctaacagt acaattgcaa
3481 aataatttcc aagccattag tagttctatt agtgacattt ataataggct tgacgaattg
3541 agtgctgatg cacaagttga caggctgatc acaggaagac ttacagcact taatgcattt
3601 gtgtctcaga ctctaaccag acaagcggag gttagggcta gtagacaact tgccaaagac
3661 aaggttaatg aatgcgttag gtctcagtct cagagattcg gattctgtgg taatggtaca
3721 catttgtttt cactcgcaaa tgcagcacca aatggcatga ttttctttca cacagtgcta
3781 ttaccaacgg cttatgaaac tgtgactgct tggccaggta tttgtgcttc agatggtgat
3841 cgcacttttg gacttgtcgt taaagatgtc cagttgactt tgtttcgtaa tctagatgac
3901 aagttctatt tgacccccag aactatgtat cagcctagag ttgcaactag ttctgacttt
3961 gttcaaattg aagggtgcga tgtgctgttt gttaatgcaa ctgtaagtga tttgcctagt
4021 attatacctg attatattga tattaatcag actgttcaag acatattaga aaattttaga
4081 ccaaattgga ctgtacctga gttgacattt gacattttta acgcaaccta tttaaacctg
4141 actggtgaaa ttgatgactt agaatttagg tcagaaaagc tacataacac cactgtagaa
4201 cttgccattc tcattgacaa cattaacaat acattagtca atcttgaatg gctcaataga
4261 attgaaacct atgtaaaatg gccttggtat gtgtggctac taataggctt agtagtaata
4321 ttttgcatac cattactgct attttgctgt tgtagtacag gttgctgtgg atgcataggt
4381 tgtttaggaa gttgttgtca ctctatatgt agtagaagac aatttgaaaa ttacgaacca
4441 attgaaaaag tgcacgtcca ttaaatttaa aatgttaatt ctatcatctg ctataatagc
4501 agttgtttct gctagagaat tttgttaagg atgatgaata aagtctttaa gaactaaact
4561 tacgagtcat tacaggtcct gtatggacat tgtcaaatcc atttacacat ccgtagatgc
4621 tgtacttgac gaacttgatt gtgcatactt tgctgtaaca
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