GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS HSSHSUR1B 227 bp ds-DNA VRL 25-MAY-1991
DEFINITION Herpesvirus saimiri (strain 488-77P) HSUR1 gene for U RNA 1
ACCESSION X53759
KEYWORDS U RNA.
SOURCE Herpesvirus saimiri DNA.
ORGANISM Herpesvirus saimiri
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Gammaherpesviridae.
REFERENCE 1 (bases 1 to 227)
AUTHORS Trimble,J.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Trimble,J.J., Regier,D.A. and Desrosiers,R.C.
TITLE Herpesvirus saimiri U RNA sequence variation
JOURNAL Nucleic Acids Res. 18, 6456-6456 (1990)
STANDARD full staff_review
COMMENT *source: strain=488-77P; clone=p307-15;
Data kindly reviewed (25-JAN-1991) by Regier D.
From EMBL 26 entry HSHSUR1B; dated 27-APR-1991.
FEATURES Location/Qualifiers
promoter 1..21
/note="5' snRNA TATA box"
misc_feature 1..21
/note="PCR primer"
misc_RNA 61..61
/note="trimethyl G cap site"
misc_feature complement(71..76)
/note="poly A addition signal"
misc_feature complement(79..84)
/note="poly A addition signal"
misc_feature 164..170
/note="Sm binding site"
misc_feature 173..180
/note="intramolecular stem"
misc_feature complement(198..205)
/note="intramolecular stem"
misc_feature 206..206
/note="3'end uRNA"
misc_feature complement(216..227)
/note="PCR primer"
BASE COUNT 80 a 40 c 33 g 74 t
ORIGIN
1 ttaccctaac taaaaacagt gttgcttttt tgaacactag tcaaatagaa ctgctaaagt
61 acactacata tttatttatt tatttcttag taatgtttac tggaacttaa atctgtgata
121 acctaaccta aaagtctcaa acaactccgt tacttgctga ccaatttttg aaggtactgg
181 gtggaaatat gaactaacca gtgccaccta agtaagttaa aagtaga
//GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS HSSHSUR1A 224 bp ds-DNA VRL 25-MAY-1991
DEFINITION Herpesvirus saimiri (strain 24-76) HSUR1 gene for U RNA 1
ACCESSION X53758
KEYWORDS U RNA.
SOURCE Herpesvirus saimiri DNA.
ORGANISM Herpesvirus saimiri
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Gammaherpesviridae.
REFERENCE 1 (bases 1 to 224)
AUTHORS Trimble,J.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Trimble,J.J., Regier,D.A. and Desrosiers,R.C.
TITLE Herpesvirus saimiri U RNA sequence variation
JOURNAL Nucleic Acids Res. 18, 6456-6456 (1990)
STANDARD full staff_review
COMMENT *source: strain=24-76; clone=p307-11;
Data kindly reviewed (25-JAN-1991) by Regier D.
From EMBL 26 entry HSHSUR1A; dated 27-APR-1991.
FEATURES Location/Qualifiers
promoter 1..21
/note="5' snRNA TATA box"
misc_feature 1..21
/note="PCR primer"
misc_RNA 61..61
/note="trimethyl G cap site"
misc_feature complement(71..76)
/note="poly A addition signal"
misc_feature complement(79..84)
/note="poly A addition signal"
misc_feature 161..167
/note="Sm binding site"
misc_feature 170..177
/note="intramolecular stem"
misc_feature complement(195..202)
/note="intramolecular stem"
misc_feature 203..203
/note="3'end uRNA"
misc_feature complement(213..224)
/note="PCR primer"
misc_feature 213..224
/note="3'snRNA end signal"
BASE COUNT 77 a 37 c 34 g 76 t
ORIGIN
1 ttaccctaac taaaaacagt gttgcttttt tgaagactag tcaaatggac ctgctaaagt
61 acactacata tttatttatt tatttcttag taatgtttac tggaacttaa atctgtgata
121 acctaaactt agtctcaaac aacccgttac ttgctgacaa atttttgtag gtactgggtg
181 taaatatgaa ataaccagtg ccacctaagt aagttaaaag taga
//GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS HSSHSUR3A 158 bp ds-DNA VRL 25-MAY-1991
DEFINITION Herpesvirus saimiri (strain 24-76) HSUR3 gene for U RNA 3
ACCESSION X53760
KEYWORDS U RNA.
SOURCE Herpesvirus saimiri DNA.
ORGANISM Herpesvirus saimiri
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Gammaherpesviridae.
REFERENCE 1 (bases 1 to 158)
AUTHORS Trimble,J.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Trimble,J.J., Regier,D.A. and Desrosiers,R.C.
TITLE Herpesvirus saimiri U RNA sequence variation
JOURNAL Nucleic Acids Res. 18, 6456-6456 (1990)
STANDARD full staff_review
COMMENT *source: strain=24-76; clone=p307-12;
Data kindly reviewed (25-JAN-1991) by Regier D.
From EMBL 26 entry HSHSUR3A; dated 27-APR-1991.
FEATURES Location/Qualifiers
promoter 1..22
/note="5' snRNA TATA box"
misc_feature 1..22
/note="PCR primer"
misc_RNA 61..61
/note="trimethyl G cap site"
misc_feature 96..102
/note="Sm binding site"
misc_feature 105..112
/note="intramolecular stem"
misc_feature complement(128..135)
/note="intramolecular stem"
misc_feature 136..136
/note="3'end uRNA"
misc_feature complement(146..158)
/note="PCR primer"
misc_feature 146..158
/note="3'snRNA end signal"
BASE COUNT 63 a 25 c 21 g 49 t
ORIGIN
1 cttaccataa cttaaataat agatagtgtt atatgttata aacaattagc acatatattt
61 aagacttgct ataaaagatt aacaacccaa gaataatttt tgaaggctct gggtctttag
121 gtccaaacca gtgccacctt tataagttaa aaaacaga
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS HSSHSUR3B 158 bp ds-DNA VRL 28-MAY-1991
DEFINITION Herpesvirus saimiri (strain 488-77P) HSUR3 gene for U RNA 3
ACCESSION X53761
KEYWORDS U RNA.
SOURCE Herpesvirus saimiri DNA.
ORGANISM Herpesvirus saimiri
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Gammaherpesviridae.
REFERENCE 1 (bases 1 to 158)
AUTHORS Trimble,J.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Trimble,J.J., Regier,D.A. and Desrosiers,R.C.
TITLE Herpesvirus saimiri U RNA sequence variation
JOURNAL Nucleic Acids Res. 18, 6456-6456 (1990)
STANDARD full staff_review
COMMENT *source: strain=488-77P; clone=p307-16;
From EMBL entry HSHSUR3B; dated 05-NOV-1990.
FEATURES Location/Qualifiers
promoter 1..22
/note="5' snRNA TATA box"
misc_feature 1..22
/note="PCR primer"
misc_RNA 61..61
/note="trimethyl G cap site"
misc_feature 96..102
/note="Sm binding site"
misc_feature 105..112
/note="intramolecular stem"
misc_feature complement(128..135)
/note="intramolecular stem"
misc_feature 136..136
/note="3'end uRNA"
misc_feature complement(146..158)
/note="PCR primer"
BASE COUNT 63 a 27 c 20 g 48 t
ORIGIN
1 cttaccataa cttaaataat agataaggtt atatgttata aacaattatc acatatattt
61 aagacttgct atagaacatt aacaacccaa gaataatttt tgaaggctct gggtctttag
121 gtccaaacca gcgccacctt tataagttaa aaaacaga
//