GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS TBRTBRVCS 1374 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Tomato black ring virus (TBRV-C) satellite RNA
ACCESSION X05689
KEYWORDS satellite RNA.
SOURCE Tomato black ring virus RNA.
ORGANISM Tomato black ring virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Nepovirus.
REFERENCE 1 (bases 1 to 1371)
AUTHORS Hemmer,O., Meyer,M., Greif,C. and Fritsch,C.
TITLE Comparison of the Nucleotide Sequences of Five Tomato Black Ring
Virus Satellite RNAs
JOURNAL J. Gen. Virol. 68, 1823-1833 (1987)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 1374)
AUTHORS Fritsch,C.
JOURNAL Unpublished (1988)
STANDARD full automatic
COMMENT *source: strain=C serotype;
Data kindly reviewed (15-FEB-1988) by Fritsch C.
From EMBL entry NCTBRVCS; dated 06-JUL-1989.
FEATURES Location/Qualifiers
old_sequence 33..34
/note="au was a in [1]"
/citation=[1]
misc_feature 40..42
/note="initiation codon"
old_sequence 96..97
/note="uu was u in [1]"
/citation=[1]
old_sequence 792..792
/note="a was u in [1]"
/citation=[1]
old_sequence 894..894
/note="c was a in [1]"
/citation=[1]
old_sequence 1167..1167
/note="u was c in [1]"
/citation=[1]
misc_feature 1297..1299
/note="in-phase termination codon"
misc_feature 1312..1361
/note="pot.stem-loop structure"
repeat_unit 1312..1330
/note="imp.inverted repeat A"
misc_feature 1321..1323
/note="in-phase termination codon"
old_sequence 1328..1329
/note="uu was u in [1]"
/citation=[1]
repeat_unit 1345..1361
/note="imp.inverted repeat A'"
BASE COUNT 399 a 310 c 318 g 347 t
ORIGIN
1 tttgaaaata attttgaaag tctctgacaa tcgtaactga tgcagaagac tatgactcga
61 cacttgtcgc gtaaccggaa gcctcatgag aaggtttccc atgttccgcg gcgagggcca
121 cgtacctacc aggatccatg cgatcctggt tggtgtgtgg taaactcttg taggagagtt
181 gcacctcaac caatacctac tagcggtagt ctgggccgca aacctctcaa tcccggctgt
241 ccgagcagga aatggacaga aaaaataatt gctgctccca agcacggctt ctatagtgca
301 aaagaccacg ggtactgggt tcccaaggtc aaagtacaga agaagtacaa ccctctccag
361 aaggttgtag gtggaggaaa atcctataag gatgttctca ccactcctgc tacaatccaa
421 attaaaccca cccctgaaag tattcttttg gctcaaaaga tacaaaattc aaccttcaaa
481 tctaggggaa aagtgacact gagccaagaa aagattccac tggtcaatcg cttccaagaa
541 ctattaattg aaaaagaact tatggaagaa attgaggaat cccaaccctt tgtggctaat
601 gatccaaggg cgcaacacct tatttgtaaa aaggtgccgc gtaaagttgg gcgacgagag
661 atcctcgtct gcccaattac taacgatgag tcacacctta atctcaagtc tgggattagg
721 gctgagattg tggattccat gggttcggtt gtgcatgcag agaaaatagc tgaatataac
781 cgaggccatg tagtgaagtc aatgcgtaag cgcattgtat acgagaggga aagtaagcca
841 attcctatca tcggatcatt tagtgatcgc gcaattagag tctcatgcga cgaccacacc
901 gatgaattgg cctctgcttc cagtgtccct tccgaatgga agccctctaa gaaccaacga
961 gctgtccctt gcttacttca aaatgagtct gggacagttg taagcacgaa gccggattgg
1021 tatacaccgg ttaaggtctg cacccacaag caatatatga aagtgcagcg tgttttcctc
1081 gacgccatga acataatgcg tgctcttcgt tttcacatag attcgaagac acttcgagaa
1141 acatgggtca agtgttggct acaggttcac aaaaaaaatg tggcattccc tggttggatg
1201 atagctccgc tattgtccgg cactgttcct tgtgaacagg agttcctttt acctcgtgta
1261 aatgagactc gggcgtttgt tacaacgtgc tatgcctaga gacctgtagg gtggagtttt
1321 taaaggtaca tgacctatta agattgtata ccttttctcc agagcaaatt tatc
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS TBRTBRVES 1372 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Tomato black ring virus (TBRV-E) satellite RNA
ACCESSION X05688
KEYWORDS satellite RNA.
SOURCE Tomato black ring virus RNA.
ORGANISM Tomato black ring virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Nepovirus.
REFERENCE 1 (bases 1 to 1370)
AUTHORS Hemmer,O., Meyer,M., Greif,C. and Fritsch,C.
TITLE Comparison of the Nucleotide Sequences of Five Tomato Black Ring
Virus Satellite RNAs
JOURNAL J. Gen. Virol. 68, 1823-1833 (1987)
STANDARD full automatic
REFERENCE 2 (bases 1 to 1372)
AUTHORS Fritsch,C.
JOURNAL Unpublished (1988)
STANDARD full automatic
COMMENT *source: strain=E serotype; serotype G was also seqenced and was
identical to serotype E except for a substitution at pos. 570 :u(in
E) corr. g(in G); the authors cannot rule out an arteficial event
and have chosen to to consider sat-RNAs E and G as identical
Data kindly reviewed (15-FEB-1988) by Fritsch C.
From EMBL entry NCTBRVES; dated 06-JUL-1989.
FEATURES Location/Qualifiers
misc_feature 40..42
/note="initiation codon"
old_sequence 347..348
/note="au was a in [1]"
/citation=[1]
old_sequence 708..709
/note="aa was a in [1]"
/citation=[1]
misc_feature 1297..1299
/note="in-phase termination codon"
misc_feature 1312..1359
/note="pot.stem-loop structure"
repeat_unit 1312..1330
/note="imp.inverted repeat A"
misc_feature 1321..1323
/note="in-phase termination codon"
repeat_unit 1343..1359
/note="imp.inverted repeat A'"
BASE COUNT 388 a 314 c 326 g 344 t
ORIGIN
1 cttgaaaata attttgaaag tctctgacaa tcgtaacaga tgcagaagac tatgactcga
61 cacttgtcgc gtaaccggaa accacatgag aaggtttccc atgttccgcg gcgagggcca
121 cgtacctacc aggacccatg tgatcctggt tggtatgtgg taaactctcg taggggagtt
181 gcacctcaac caacacctac tagcggtagt ctgggccgca aaccttataa tcccggttgt
241 ccgagcagga aatggacaaa aaaaataatt gctgccccca agcacggctt ctacagtgca
301 aaagaccatg ggtactgggt tcccaaggtt caggcacaga agaagtataa cccccctcgg
361 aaggttgtag gtggaggaag atcttacaag gatgttcttt ccacccctgc gaaaatccaa
421 attaaaccca cccctgaaag tattcttttg gctcaaaaga tacaaaattc aaccttcaaa
481 tctaggggaa aagtgacact gagccaagaa aagattccac taatcaatcg cttccaagaa
541 ctattaattg aaaaagagct tatggaagat gttgaggaat cccaaccctt tgtggccaac
601 gattcaaggg cgcaacacct tttttgtaaa aaggtgttgc gtaaggttgg acggcgggag
661 atcctcgtct gtccaattac taatgaagag tcacacgtta atctcaaaac tgggattaag
721 gctcggattg tggattccat gggttcggtc gtgcatgaag agaatatacc tgcatataac
781 cgaggccatg ttgtgaaatc gatgcgcaag cgcatcgtgc atgagaggga gagcaagcca
841 attcctgtca tcggatcatt tagtgatcgc gcaattagag tcttatgcga cgatcacacc
901 gatgagttgg cctctgcttc cagtgtccct tccgaatgga agccctctaa gaaccaacga
961 gctgtccctt gcttacttca aaatgagtct gcgacagttg taagcgcgaa accggactgg
1021 tatgcaccgg ttaaggtctg cacccacaag caatatatga aggtgcagcg cgtcttcctt
1081 gacgccatgt tcatcatgcg tgctcttcgc ttccatatag atgcgaagat acttcgagaa
1141 acatgggtca agtgttggct acaggtccac agaaaaaatg tggcattccc tggttggatg
1201 atagctccgc tattatctgg cactgttcct tgtgaacagg agtttctttt acctcgtgta
1261 aatgagactc gggcgtttgc cacagtgtgc tatgcctaga gacctgtagg gttgagtttt
1321 taaaggtaca tgactttaag attgtatacc ctttctcaag agcaaattaa tc
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS TBRTBRVLS 1376 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Tomato black ring virus (TBRV-L) satellite RNA
ACCESSION X05687
KEYWORDS satellite RNA.
SOURCE Tomato black ring virus RNA.
ORGANISM Tomato black ring virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Nepovirus.
REFERENCE 1 (bases 1 to 1376)
AUTHORS Hemmer,O., Meyer,M., Greif,C. and Fritsch,C.
TITLE Comparison of the Nucleotide Sequences of Five Tomato Black Ring
Virus Satellite RNAs
JOURNAL J. Gen. Virol. 68, 1823-1833 (1987)
STANDARD full automatic
REFERENCE 2 (bases 1 to 1376)
AUTHORS Fritsch,C.
JOURNAL Unpublished (1988)
STANDARD full automatic
COMMENT *source: strain=L serotype;
Data kindly reviewed (15-FEB-1988) by Fritsch C.
From EMBL entry NCTBRVLS; dated 06-JUL-1989.
FEATURES Location/Qualifiers
misc_feature 15..17
/note="initiation codon"
old_sequence 150..150
/note="u was c in [1]"
/citation=[1]
misc_feature 1287..1289
/note="in-phase termination codon"
misc_feature 1302..1362
/note="pot.stem-loop structure"
repeat_unit 1302..1327
/note="imp.inverted repeat A"
misc_feature 1311..1313
/note="in-phase termination codon"
repeat_unit 1341..1362
/note="imp.inverted repeat A'"
BASE COUNT 385 a 326 c 325 g 340 t
ORIGIN
1 ttgaaaaaat acagatgaag tcttattttt gtgtaacccc aacaggttgt cttaagactc
61 atactcgacc acgaatagtt cctaagcatt caaagaaatg cctaaggacc tattctcggc
121 cacgctccag cctttctgac tcggaaggct ggtgtgtggt gctcccccgt gacggggggg
181 gccgtaagcg caaggcagac ggtagccagg gccgtccttc aaacaatccc ggtcgtccga
241 gcaggaaatg gacggaaaaa acaattgctg ctcccccgca gggcttcttc agcaggaggg
301 acaatgggta ctgggttccc aagtctccgg agaagaagta tgttccgaag aatcttccta
361 ggaacatgga tggcaagaaa acctataagg atgccttgac ctcccctgcg aaaatccaaa
421 tcaaacccac ccctgaaagt attcttttgg ctcaaaagat acaaaattca accttcaaat
481 ctaggggaaa agtgacactg agccaaactt ctttaccact cgtcaaccgg tttcaggaac
541 tccaattgaa tactcttttg gaacctgttg aagagtccac acccttcggg gttaacgata
601 aacgagcgca acaccttttt tgtaaaaagg tggaacgcaa ggttggacgc acaacaatgt
661 tggtgtgtcc aattacaggt actgagtccc acatagacgt taaacgtggg attagtgcca
721 gaatcgtgga ctccatggcc tcggtagtgc ataccgataa acttcccgaa tatgaacggg
781 gccatgttgt gataaagaac gtctcacgta ccaagagggt atgtacgcca gttcctttca
841 tcggaacttt tagtgatcgc gcaattagag ttgaatgcga cgatcatacc gatgaactgg
901 cctctgcatc tagtgtccct tccatttgga agccctcaaa gaaacagcat gctgtcccca
961 tttcatcttc taatgaaatg ggttcagcag taggcacgaa accggactgg tacactccgg
1021 ttaagacttg cactcatcgc caatatcaga aagtgcagcg tgtcttcctt gacgccatga
1081 acataatgcg taccttgcgt ttccatatag gaccgcgaga acttcgagaa acatgggtca
1141 agtgctggct acaggtccac aaaaagaatg tggcattccc gggttggatg ataactccgt
1201 tattgtctgg cactgtgcct tgtgcacaag aatttttcct gcctttggca ggggaaaacc
1261 gggggtttgt cacagtttgt caagcctaga gacctgtagg gtggagtttt taaaggtaca
1321 tgatcattca tgtgaaatat aagattgtat accttttctc cagagcaaat aaatct
//