GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS PVBBKVMM 4963 bp ds-DNA VRL 28-MAY-1991 DEFINITION Human BK virus (strain MM) genome. (Closely related to SV40.) ACCESSION V01109 KEYWORDS circular; genome. SOURCE Papovavirus BKV DNA. ORGANISM Papovavirus BKV Viridae; ds-DNA nonenveloped viruses; Papovaviridae; Papillomavirus. REFERENCE 1 (bases 1 to 4963) AUTHORS Yang,R.C. and Wu,R. TITLE BK Virus DNA: Complete Nucleotide Sequence of a Human Tumor Virus JOURNAL Science 206, 456-462 (1979) STANDARD full automatic COMMENT SWISS-PROT; P03071; TALA$POVBK. SWISS-PROT; P03082; TASM$POVBK. SWISS-PROT; P03085; DNBI$POVBK. SWISS-PROT; P03088; COA1$POVBK. SWISS-PROT; P03094; COA2$POVBK. This entry was previously named <PAPSMTZ1>. The sequence is listed beginning at the second base of the unique Eco RI site, which is used as map position 0 or 1.0 in the standard physical map. The polarity is that of the late mRNAs. From EMBL entry PABKVMM; dated 06-JUL-1989. FEATURES Location/Qualifiers CDS complement(884..2725) /note="large T antigen (part 2)" /codon_start=2725 intron complement(2726..2807) /note="putative IVS for large T antigen" CDS complement(2748..3047) /note="small t antigen" /codon_start=3047 CDS complement(2808..3047) /note="large T antigen (part 1)" /codon_start=3047 rep_origin 3144..3166 /note="origin of replication" CDS 3510..3707 /note="putative VPx" /codon_start=3510 CDS 3746..4798 /note="VP2" /codon_start=3746 CDS 4103..4798 /note="VP3" /codon_start=4103 CDS 4686..811 /note="VP1 (circular; across map position 0)" /codon_start=4686 BASE COUNT 1478 a 996 c 989 g 1500 t ORIGIN 1 aattcccctc cccaatttaa atgaggacct aacctgtgga aatctactga tgtgggaggc 61 tgtaactgta caaacagagg ttattggaat aactagcatg cttaaccttc atgcagggtc 121 acaaaaagtg catgagcatg gtggaggaaa acctattcaa ggcagtaatt tccacttctt 181 tgctgttggt ggagacccct tggaaatgca gggagtgcta atgaattaca ggacaaagta 241 cccagatggt actataaccc ctaaaaaccc aacagcccag tcccaggtaa tgaatactga 301 ccataaggcc tatttggaca aaaacaatgc ttatccagtt gagtgctggg ttcctgatcc 361 tagtagaaat gaaaatacta ggtattttgg gactttcaca ggaggggaaa atgttccccc 421 agtacttcat gtgaccaaca cagctaccac agtgttgcta gatgaacagg gtgtggggcc 481 tctttgtaaa gctgatagcc tgtatgtttc agctgctgat atttgtggcc tgtttactaa 541 cagctctgga acacaacagt ggagaggcct tgcaagatat tttaagatcc gcctgagaaa 601 aagatctgta aagaatcctt acctaatttc ctttttgcta agtgacctta taaacaggag 661 aacccagaga gtggatgggc agcctatgta tggtatggaa tcccaggtag aagaggttag 721 ggtgtttgat ggcacagaaa gacttccagg ggacccagat atgataagat atattgacaa 781 acagggacaa ttgcaaacca aaatgcttta aacaggtgct tttattgtac atatacattt 841 aataaatgct gcttttgtat aagccacttt taagcttgtg ttattttggg ggtggtgttt 901 taggcctttt aaaacactga aagcctttac acaaatgcaa ctcttgacta tgggggtctg 961 acctttggga atcttcagca ggggctgaag tatctgagac ttgggaagag cattgtgatt 1021 gggattcagt gcttgatcca tgtccagagt cttcagtttc tgaatcctct tctcttgtaa 1081 tatcaagaat acatttcccc atgcatatat tatatttcat ccttgaaaaa gtatacatac 1141 ttatctcaga atccagcctt tccttccatt caacaattct agattgtata tcagttgcaa 1201 aatcagctac aggcctaaac caaattagca gtagcaacaa ggtcattcca ctttgtaaaa 1261 ttcttttttc aagtaagaac tctgagtttt gtaaggattt tcttaaatat attttgggcc 1321 taaaatctat ttgtcttaca aatctagctt gcagggtttt agggacagga tactcattca 1381 ttgtaaccaa gcctggtgga aatatttggg ttcttttgtt taaatgtttc ttttctaaat 1441 ttaccttaac acttccatct aaataatctc tcaaactgtc taaattgttt attccatgtc 1501 ctgaaggcaa atcctttgat tcagctcctg tcccttttac atcttcaaaa acaaccatgt 1561 actgatctat agctacacct agctcaaagg ttagcctttc catgggtagg tttacattta 1621 aggctttacc tctacacaaa tctaacaacc ctgcagctag tgttgttttt ccactatcaa 1681 tgggaccttt aaataaccag tatcttcttt taggtacatt gaaaacaata cagtgcaaaa 1741 aatcaaatat tacagaatcc attttaggta gcaaacagtg cagccaagca acacctgcca 1801 tatattgttc tagtacagca tttccatgag ctccaaatat taaatccatt ttatctaata 1861 tatgattgaa tctttctgtt agcatttctt ccctggtcat atgaagggta tctactcttt 1921 ttttagctaa aactgtatct actgcttgct gacaaataac ttttttgttt ttactttctg 1981 caaaaataat agcatttgca aagtgctttt catgatactt aaagtgataa ggctggtctt 2041 ttttctgaca ctttttacac tcctctacat tgtattgaaa ttctaaatac atacctaata 2101 ataaaaacac atcctcacac tttgtctcta ctgcatactc agtaattaat ttccaagaca 2161 cctgctttgt ttcttcaggc tcttctgggt taaaatcatg ctcctttaag cccccttgaa 2221 tgctttcttc tatagtatgg tatggatctc tagttaaggc actatatagt aagtattcct 2281 tattaacacc cttacaaatt aaaaaactaa aggtacacag cttttgacag aaattattaa 2341 ttgcagaaac tctatgtcta tgtggagtta aaaagaatat aatattatgc ccagcacaca 2401 tgtgtctact aataaaagtt acagaatatt tttccataag ttttttatac agaatttgag 2461 ctttttcttt agtagtatac acagcaaagc aggcaagggt tctattacta aatacagctt 2521 gactaagaaa ctggtgtaga tcagagggaa agtctttagg gtcttctacc tttctttttt 2581 ttttgggtgg tgttgagtgt tgagaatctg ctgttgcttc ttcatcactg gcaaacatat 2641 cttcatggca aaataaatct tcatcccatt tttcattaaa ggaactccac caggactccc 2701 actcttctgt tccataggtt ggcacctata aaaaaaataa ttacttaggg cataggccat 2761 tccttgcagt acagggtatc tgggcaaaga ggaaaatcag cacaaacctc tgagctactc 2821 caggttccaa aatcaggctg atgagctacc tttacatcct gctccatttt tttatacaaa 2881 gtattcattc tcttcatttt atcctcgtcg ccccctttgt cagggtgaaa ttccttacac 2941 ttccttaaag cttttctcat taagggaaga tttccccagg cagctctttc aaggcctaaa 3001 aggtccatga gctccatgga ttcttccctg ttaagaactt tatccatttt tgcaaaaatt 3061 gcaaaagaat agggatttcc ccaaatagtt ttgctaggcc tcagaaaaag cctccacacc 3121 cttactactt gagagaaagg gtggaggcag aggcggcctc ggcctcttat atattataaa 3181 aaaaaaggcc acagggagga gctgcttacc catggaatgc agccaaacca tgacctcagg 3241 aaggaaagtg catgactggg cagccagcca gtggcagtta atagtgaaac cccgccccta 3301 aaatctctct tacccatgga atgcagccaa accatgacct caggaaggaa agtgcatgac 3361 tgggcagcca gccagtggca gttaatagtg aaaccatgcc aaaccatgac ctcaggaagg 3421 aaagtgcatg actgggcagc cagccagtgg cagttaattt gcgagcctag gaatcttggc 3481 cttgtcccca gttaaactgg acaaaggcca tggttctgcg ccagctgtca cgacaagctt 3541 cagtgaaagt tggtaaaacc tggactggaa caaaaaaaag agctcagagg atttttattt 3601 ttattttaga gcttttgctg gaattttgta gaggtgaaga cagtgtagac gggaaaaaca 3661 aaagtaccac tgctttacct gctgtaaaag actctgtaaa agactcctag gtaagtaatc 3721 cctttttttt tgtatttcca ggttcatggg tgctgctcta gcacttttgg gggacctagt 3781 tgccagtgta tctgaggctg ctgctgccac aggattttca gtggctgaaa ttgctgctgg 3841 ggaggctgct gctgctatag aagttcaaat tgcatccctt gctactgtag agggcataac 3901 aagtacctca gaggctatag ctgctatagg cctaactcct caaacatatg ctgtaattgc 3961 tggtgctcct ggggctattg ctgggtttgc tgctttaatt caaactgtta gtggtattag 4021 ttccttggct caagtagggt ataggttctt tagtgattgg gatcacaaag tttccactgt 4081 aggcctctat cagcaatcag gcatggcttt ggaattgttt aacccagatg agtactatga 4141 tattctgttt cctggtgtaa atacttttgt taataatatt caataccttg atcctaggca 4201 ttggggtcct tctttgtttg ctactatttc ccaggctttg tggcatgtta ttagggatga 4261 tataccttct ataacctcac aggaattgca gagaagaaca gaaagatttt ttagagactc 4321 cttggctaga tttttggagg aaactacctg gacaattgta aatgccccta taaactttta 4381 taattatatt caacaatatt attctgatct ttcccctatt aggccctcaa tggttagaca 4441 agtagctgaa agggaaggta cccgtgtaca ttttggccat acttatagta tagatgatgc 4501 tgacagtata gaagaagtta cacaaagaat ggacttaaga aatcaacaaa gtgtacattc 4561 aggagagttt atagaaaaaa ctattgcccc aggaggtgct aatcaaagaa ctgctcctca 4621 atggatgttg cctttacttc taggcctgta cgggactgta acacctgctc ttgaagcatg 4681 tgaagatggc cccaaccaaa agaaaaggag agtgtccagg ggcagctccc aaaaagccaa 4741 aggaacccgt gcaagtgcca aaactactaa taaaaggagg agtagaagtt ctagaagtta 4801 aaactggggt agatgctatt acagaggtag aatgcttcct aaacccagaa atgggggatc 4861 cagatgaaaa ccttaggggc tttagtctaa agctaagtgc tgaaaatgac tttagcagtg 4921 atagcccaga gagaaaaatg cttccctgtt acagcacagc aag //