GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SNDMPF3F 1845 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Human parainfluenza virus type 3 (PF3), fusion protein (F) mRNA, complete cds. ACCESSION D00016 N00016 KEYWORDS Paramyxovirus; fusion protein F; parainfluenza virus; parainfluenza virus type 3. SOURCE Parainfluenza virus type 3 RNA. ORGANISM Parainfluenza virus type 3 Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses; Paramyxoviridae; Paramyxovirus. REFERENCE 1 (bases 1 to 1845) AUTHORS Spriggs,M.K., Olmsted,R.A., Venkatesan,S., Coligan,J.E. and Collins,P.L. TITLE Fusion glycoprotein of human parainfluenza virus type 3: Nucleotide sequence of the gene, direct identification of the cleavage-activation site, and comparison with other paramyxoviruses JOURNAL Virology 152, 241-251 (1986) STANDARD full automatic COMMENT SWISS-PROT; P06828; VGLF$PI3H4. The fusion (F) mRNA contains 1845 nucleotides, exclusive of poly(A), has an unusually long (193-nucleotide) 5'nontranslated region, and encodes an unprocessed Fo protein of 539 amino acids. To establish the authenticity of the cDNA sequence, the F gene was sequenced directly, in its entirety by dideoxynucleotide sequencing of vRNA. This confirmed the cDNA sequence in general, but also identified differences between the cDNAs and vRNA at eight nucleotide positions (position 494, 614, 652, 1093, 1564, 1574, 1588, 1783). These are thought to represent variability introduced during PF3 RNA synthesis (reported in [1]). From EMBL entry PAMPF3F; dated 26-APR-1990. FEATURES Location/Qualifiers CDS 194..1813 /note="Fusion protein (F)" /codon_start=194 BASE COUNT 736 a 332 c 323 g 454 t ORIGIN 1 aggacaaaag aagtcaatac caacaactat tagcagccac actcgctgga acaagaaaga 61 agggataaaa aaagtttaac agaagaaaca aaaacaaaaa gcacagaaca ccagaacaac 121 aagatcaaaa cacccaaccc actcaaaacg aaaatctcaa aagagattgg caacacaaca 181 aacactgaac atcatgccaa cctcaatact gctaattatt acaaccatga ttatggcatc 241 tttctgccaa atagatatca caaaactaca gcatgtaggt gtattggtta acagttccaa 301 agggatgaag atatcacaaa actttgaaac aagatatcta attttgagcc tcataccaaa 361 aatagaagat tctaactctt gtggtgacca acagatcaag caatacaaga ggttattgga 421 tagactgatc attcctttat atgatggatt aagattacag aaggatgtga tagtgtccaa 481 tcaagaatcc aatgaaaaca ctgaccccag aacaaaacga ttctttggag gggtaattgg 541 aactattgct ctgggagtgg caacctcagc acaaattaca gcggcagttg ctctggttga 601 agccaagcag gcaagatcag acattgaaaa actcaaggaa gcaatcaggg acacaaacaa 661 agcagtgcag tcagtccaga gctccatagg aaatttgata gtagcaatta aatcggtcca 721 ggattatgtc aacaaagaaa tcgtgccatc aattgcgaga ttaggttgtg aagcagcagg 781 acttcagtta ggaattgcat taacacagca ttactcagaa ttaacaaaca tattcggtga 841 taacatagga tcgttacaag aaaaagggat aaaattacaa ggtatagcat cattataccg 901 cacaaatatc acagagatat tcacaacatc aacagttgat aaatatgata tttatgatct 961 attatttaca gaatcaataa aggtgagagt tatagatgtt gacttgaatg attactcgat 1021 cgccctccaa gtcagactcc ctttattaac tagactgctg aacacccaga tttacagagt 1081 agattccata tcatataaca tccaaaacag agaatggtat atccctcttc ccagccacat 1141 catgacaaaa ggggcatttc taggtggagc agatgtcaaa gaatgtatag aagcattcag 1201 cagttatata tgcccttctg atccaggatt tgtactaaac catgaaatgg agagctgttt 1261 atcaggaaac atatcccaat gtccaagaac cgtggttaaa tcagacattg ttccaagata 1321 tgcatttgtc aatggaggag tggttgcaaa ttgtataaca accacatgta catgcaacgg 1381 tatcggtaat agaatcaatc aaccacctga tcaaggagta aaaattataa cacataaaga 1441 atgtaataca ataggtatca acggaatgct gttcaataca aataaagaag gaactcttgc 1501 attttacaca ccaaatgata taacattaaa caattctgtt gcacttgatc caattgacat 1561 atcaatcgag ctcaataagg ccaaatcaga tctagaagag tcaaaagaat ggataagaag 1621 gtcaaatcaa aaactagatt ccattggaaa ttggcatcaa tctagcacca caatcataat 1681 tgttttgata atgataatta tattgtttat aattaatgta acgataatta taattgcagt 1741 taagtattac agaattcaaa agagaaatcg agtggatcaa aatgataaac catatgtatt 1801 aacaaacaaa tgacagatct atagatcatt agatattaaa attat //
GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SNDMPF3PA 2024 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Human parainfluenza virus type 3 (PIV-3), phosphoprotein (P) mRNA, complete cds. ACCESSION D00048 N00048 KEYWORDS phosphoprotein. SOURCE Parainfluenza virus type 3 RNA. ORGANISM Parainfluenza virus type 3 Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses; Paramyxoviridae; Paramyxovirus. REFERENCE 1 (bases 1 to 2024) AUTHORS Luk,D., Sanchez,A. and Banerjee,A.K. TITLE Messenger RNA encoding the phosphoprotein (P) gene of human parainfluenza virus 3 is bicistronic JOURNAL Virology 153, 318-325 (1986) STANDARD full automatic COMMENT SWISS-PROT; P06162; RRPP$PI3H4. SWISS-PROT; P06165; VNSC$PI3H4. SWISS-PROT; P08653; MERB$STAAU. SWISS-PROT; P08655; MERR$STAAU. SWISS-PROT; P08656; MERT$STAAU. SWISS-PROT; P08663; MERA$STAAU. The complete nucleotide sequence of the phosphoprotein (P) mRNA of human parainfluenza virus 3 (PIV-3) was derived from two cDNA clones spanning almost the entire P gene. The mRNA, excluding the poly(A) tail, is 2014 nucleotides long and is bicistronic. The first open reading frame (ORF) codes for the phosphoprotein (P) of mol wt 68860. Seven nucleotides downstream from the first AUG codon, in a +1 reading frame, there is an additional ORF which can code for a polypeptide of mol wt 23266. The latter protein appears to be similar to the C proteins found in cells infected with several paramyxoviruses. From EMBL entry PAMPF3PA; dated 02-APR-1988. FEATURES Location/Qualifiers CDS 80..1927 /note="phosphoprotein P" /codon_start=80 CDS 90..689 /note="nonstructural protein C" /codon_start=90 BASE COUNT 892 a 382 c 372 g 378 t ORIGIN 1 aggattaaag aatcctatca taccagaaca tagagtggta aatttagagt ctgcttgcaa 61 ctcaatcaat agagagttga tggaaagcga tgctaaaaac tatcaaatca tggattcttg 121 ggaagaggaa ccaagagata aatcaactaa tatctcctcg gccctcaaca tcattgaatt 181 catactcagc accgaccccc aagaagacct atcggaaaac gacacaatca acacaagaac 241 ccagcaactc agcgccacca tctgtcaacc agaaatcaaa ccaacagaaa caagtgaaaa 301 agttagtgga tcaactgaca aaaatagaca gtctgggtca tcacacgaat gtacaacaga 361 agcaaaacat agaaatattg atcaggaaac tgtacaggga ggatctggga gaagaagcag 421 ctcagatagt agagctgaga ctgtggtctc tggaggaatc tctggaagca tcacagattc 481 taaaaatgga acccaaaaca cggagaatat tgatctcaat gaaattagaa agatggataa 541 ggactctatt gagaggaaaa tgcgacaatc tgcagatgtt ccaagcgaga tatcaggaag 601 tgatgtcata tttacaacag aacaaagtag aaacagtgat catggaagaa gcttggaacc 661 tatcagtaca cctgatacaa gatcaatgag tgttgttact gctgcgacac cagatgatga 721 agaagaaata ctaatgaaaa atagtaggat gaagaaaagt tcttcaacac accaagaaga 781 tgacaaaaga attaaaaaag gggggggggg aaaagggaaa gactggttta agaaatcaag 841 agatactgac aaccagacat caacatcaga tcacaaaccc acatcaaaag ggcaaaagaa 901 aatctcaaaa acaacaacca ccaacaccga cacaaagggg caaacagaaa cacagacaga 961 atcatcagaa acacaatccc catcatggaa tcccattatc gacaacaaca ctgaccgaac 1021 cgaacagaca agcacaaccc ccccaacaac aactcccaaa tcaactcgta caaaagaatc 1081 aatccgaaca aactctgaat ccaaacccaa gacacaaaag acaattggaa aggaaaggaa 1141 ggatacagaa gagagcaatc gatttacaga gagggcaatt actctattgc agaatcttgg 1201 tgtaattcaa tctacatcaa aactagattt atatcaagac aaacgagttg tatgtgtagc 1261 aaatgtacta aacaatgtag atactgcatc aaagatagac ttcctagcag gattagtcat 1321 aggggtttca atggacaatg acacaaaatt aatacagata caaaatgaaa tgttaaacct 1381 caaagcagat ctaaagagaa tggacgaatc acatagaaga ttgatagaaa atcaaagaga 1441 acaactgtca ttgatcacat cgttaatttc aaatcttaaa attatgactg agagaggagg 1501 aaagaaaaac caaaatgaat ccaatgagag agtatctatg atcaagacaa aattgaaaga 1561 agaaaagatc aagaaaacca ggtttgaccc acttatggag gcacaaggta ttgacaagaa 1621 tatacctgat ctatatcgac atgcaggaaa tacgttagag aacgacgtac aagttaaatc 1681 agagatatta agttcataca acgagtcaaa tgcaacaaga ctaataccca gaaaagtgag 1741 cagtacaatg agatcactag ttgcagtcat caacaacagc aatctcccac aaagcacaaa 1801 acaatcatat ataaacgaac tcaaacattg caaaagtgat gaagaagtat ctgaattgat 1861 ggacatgttc aatgaagatg ttaacaatgc taaagatcaa ataaaaaaaa caacaccgaa 1921 taaatagaca agaaacaaca gtagatcaaa acctatcaac acacacaaaa tcaagcagag 1981 tgaaacaata gacatcaatc aatatacaaa taagaaaaaa aaaa //