GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS PPBPABPV1 7945 bp ds-DNA VRL 28-MAY-1991
DEFINITION Bovine papillomavirus type 1 (BPV-1) genome
ACCESSION X02346
KEYWORDS genome; inverted repeat; unidentified reading frame.
SOURCE Bovine papillomavirus DNA.
ORGANISM Bovine papillomavirus
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Papillomavirus.
REFERENCE 1 (bases 1 to 7945)
AUTHORS Chen,E.Y., Howley,P.M., Levinson,A.D. and Seeburg,P.H.
TITLE The primary structure and genetic organization of the bovine
papillomavirus type 1 genome
JOURNAL Nature 299, 529-534 (1982)
STANDARD full automatic
REFERENCE 2 (bases 7120 to 7399)
AUTHORS Baker,C.C. and Howley,P.M.
TITLE Differential promoter utilization by the bovine papillomavirus in
transformed cells and productively infected wart tissues
JOURNAL EMBO J. 6, 1027-1035 (1987)
STANDARD full automatic
COMMENT EPD; 11205; BPV1 P_L (wart) P2. EPD; 11206; BPV1 P_L P1.
EPD; 11207; BPV1 P7940 P1. EPD; 11208; BPV1 P89 P2.
EPD; 11209; BPV1 P2443 (E2). EPD; 11210; BPV1 P3080. SWISS-PROT;
P03103; VL1$BPV1. SWISS-PROT; P03109; VL2$BPV1. SWISS-PROT; P03116;
VE1$BPV1. SWISS-PROT; P03122; VE2$BPV1. SWISS-PROT; P06926;
VE4$BPV1. SWISS-PROT; P06928; VE5$BPV1. SWISS-PROT; P06931;
VE6$BPV1. SWISS-PROT; P06933; VE7$BPV1.
From EMBL entry PAPABPV1; dated 06-JUL-1989.
FEATURES Location/Qualifiers
repeat_unit 37..47
/note="inverted repeat A"
promoter 58..63
/note="TATA sequence"
misc_feature 89..91
/note="pot. cap site"
misc_feature 182..183
/note="pot. splice site"
promoter 4072..4077
/note="TATA sequence"
misc_feature 4150..4150
/note="pot. open reading frame start site"
CDS 4171..7092
/note="put. open reading frame"
/codon_start=4171
misc_feature 4179..4183
/note="polyadenylation signal"
promoter 5089..5094
/note="TATA sequence"
promoter 6859..6864
/note="TATA sequence"
repeat_unit 7068..7081
/note="inverted repeat B"
polyA_site 7083..7083
/note="pot. polyadenylation site"
repeat_unit 7089..7098
/note="inverted repeat C"
repeat_unit 7098..7108
/note="inverted repeat D"
promoter 7108..7113
/note="TATA sequence"
misc_RNA 7131..7133
/note="pot. cap site"
misc_feature 7137..7138
/note="pot. splice site"
repeat_unit 7139..7152
/note="inverted repeat E"
repeat_unit 7241..7253
/note="inverted repeat E'"
repeat_unit 7331..7341
/note="inverted repeat D'"
repeat_unit 7435..7444
/note="inverted repeat C'"
repeat_unit 7568..7581
/note="inverted repeat B"
repeat_unit 7596..7606
/note="inverted repeat F"
repeat_unit 7872..7882
/note="inverted repeat F'"
repeat_unit 7921..7931
/note="inverted repeat A'"
BASE COUNT 2270 a 1713 c 1887 g 2074 t 1 others
ORIGIN
1 gttaacaata atcacaccat caccgttttt tcaagcggga aaaaatagcc agctaactat
61 aaaaagctgc tgacagaccc cggttttcac atggacctga aaccttttgc aagaaccaat
121 ccattctcag ggttggattg tctgtggtgc agagagcctc ttacagaagt tgatgctttt
181 aggtgcatgg tcaaagactt tcatgttgta attcgggaag gctgtagata tggtgcatgt
241 accatttgtc ttgaaaactg tttagctact gaaagaagac tttggcaagg tgttccagta
301 acaggtgagg aagctgaatt attgcatggc aaaacacttg ataggctttg cataagatgc
361 tgctactgtg ggggcaaact aacaaaaaat gaaaaacatc ggcatgtgct ttttaatgag
421 cctttctgca aaaccagagc taacataatt agaggacgct gctacgactg ctgcagacat
481 ggttcaaggt ccaaataccc atagaaactt ggatgattca cctgcaggac cgttgctgat
541 tttaagtcca tgtgcaggca cacctaccag gtctcctgca gcacctgatg cacctgattt
601 cagacttccg tgccatttcg gccgtcctac taggaagcga ggtcccacta cccctccgct
661 ttcctctccc ggaaaactgt gtgcaacagg gccacgtcga gtgtattctg tgactgtctg
721 ctgtggaaac tgcggaaaag agctgacttt tgctgtgaag accagctcga cgtccctgct
781 tggatttgaa caccttttaa actcagattt agacctcttg tgtccacgtt gtgaatctcg
841 cgagcgtcat ggcaaacgat aaaggtagca attgggattc gggcttggga tgctcatatc
901 tgctgactga ggcagaatgt gaaagtgaca aagagaatga ggaacccggg gcaggtgtag
961 aactgtctgt ggaatctgat cggtatgata gccaggatga ggattttgtt gacaatgcat
1021 cagtctttca gggaaatcac ctggaggtct tccaggcatt agagaaaaag gcgggtgagg
1081 agcagatttt aaatttgaaa agaaaagtat tggggagttc gcaaaacagc agcggttccg
1141 aagcatctga aactccagtt aaaagacgga aatcaggagc aaagcgaaga ttatttgctg
1201 aaaangaagc taaccgtgtt cttacgcccc tccaggtaca gggggagggg gaggggaggc
1261 aagaacttaa tgaggagcag gcaattagtc atctacatct gcagcttgtt aaatctaaaa
1321 atgctacagt ttttaagctg gggctcttta aatctttgtt cctttgtagc ttccatgata
1381 ttacgaggtt gtttaagaat gataagacca ctaatcagca atgggtgctg gctgtgtttg
1441 gccttgcaga ggtgtttttt gaggcgagtt tcgaactcct aaagaagcag tgtagttttc
1501 tgcagatgca aaaaagatct catgaaggag gaacttgtgc agtttactta atctgcttta
1561 acacagctaa aagcagagaa acagtccgga atctgatggc aaacacgcta aatgtaagag
1621 aagagtgttt gatgctgcag ccagctaaaa ttcgaggact cagcgcagct ctattctggt
1681 ttaaaagtag tttgtcaccc gctacactta aacatggtgc tttacctgag tggatacggg
1741 cgcaaactac tctgaacgag agcttgcaga ccgagaaatt cgacttcgga actatggtgc
1801 aatgggccta tgatcacaaa tatgctgagg agtctaaaat agcctatgaa tatgctttgg
1861 ctgcaggatc tgatagcaat gcacgggctt ttttagcaac taacagccaa gctaagcatg
1921 tgaaggactg tgcaactatg gtaagacact atctaagagc tgaaacacaa gcattaagca
1981 tgcctgcata tattaaagct aggtgcaagc tggcaactgg ggaaggaagc tggaagtcta
2041 tcctaacttt ttttaactat cagaatattg aattaattac ctttattaat gctttaaagc
2101 tctggctaaa aggaattcca aaaaaaaact gtttagcatt tattggccct ccaaacacag
2161 gcaagtctat gctctgcaac tcattaattc attttttggg tggtagtgtt ttatcttttg
2221 ccaaccataa aagtcacttt tggcttgctt ccctagcaga tactagagct gctttagtag
2281 atgatgctac tcatgcttgc tggaggtact ttgacacata cctcagaaat gcattggatg
2341 gctaccctgt cagtattgat agaaaacaca aagcagcggt tcaaattaaa gctccacccc
2401 tcctggtaac cagtaatatt gatgtgcagg cagaggacag atatttgtac ttgcatagtc
2461 gggtgcaaac ctttcgcttt gagcagccat gcacagatga atcgggtgag caacctttta
2521 atattactga tgcagattgg aaatcttttt ttgtaaggtt atgggggcgt ttagacctga
2581 ttgacgagga ggaggatagt gaagaggatg gagacagcat gcgaacgttt acatgtagcg
2641 caagaaacac aaatgcagtt gattgagaaa agtagtgata agttgcaaga tcatatactg
2701 tactggactg ctgttagaac tgagaacaca ctgctttatg ctgcaaggaa aaaaggggtg
2761 actgtcctag gacactgcag agtaccacac tctgtagttt gtcaagagag agccaagcag
2821 gccattgaaa tgcagttgtc tttgcaggag ttaagcaaaa ctgagtttgg ggatgaacca
2881 tggtctttgc ttgacacaag ctgggaccga tatatgtcag aacctaaacg gtgctttaag
2941 aaaggcgcca gggtggtaga ggtggagttt gatggaaatg caagcaatac aaactggtac
3001 actgtctaca gcaatttgta catgcgcaca gaggacggct ggcagcttgc gaaggctggg
3061 gctgacggaa ctgggctcta ctactgcacc atggccggtg ctggacgcat ttactattct
3121 cgctttggtg acgaggcagc cagatttagt acaacagggc attactctgt aagagatcag
3181 gacagagtgt atgctggtgt ctcatccacc tcttctgatt ttagagatcg cccagacgga
3241 gtctgggtcg catccgaagg acctgaagga gaccctgcag gaaaagaagc cgagccagcc
3301 cagcctgtct cttctttgct cggctccccc gcctgcggtc ccatcagagc aggcctcggt
3361 tgggtacggg acggtcctcg ctcgcacccc tacaattttc ctgcaggctc ggggggctct
3421 attctccgct cttcctccac cccgtgcagg gcacggtacc ggtggacttg gcatcaaggc
3481 aggaagaaga ggagcagtcg cccgactcca cagaggaaga accagtgact ctcccaaggc
3541 gcaccaccaa tgatggattc cacctgttaa aggcaggagg gtcatgcttt gctctaattt
3601 caggaactgc taaccaggta aagtgctatc gctttcgggt gaaaaagaac catagacatc
3661 gctacgagaa ctgcaccacc acctggttca cagttgctga caacggtgct gaaagacaag
3721 gacaagcaca aatactgatc acctttggat cgccaagtca aaggcaagac tttctgaaac
3781 atgtaccact acctcctgga atgaacattt ccggctttac agccagcttg gacttctgat
3841 cactgccatt gccttttctt catctgactg gtgtactatg ccaaatctat ggtttctatt
3901 gttcttggga ctagttgctg caatgcaact gctgctatta ctgttcttac tcttgttttt
3961 tcttgtatac tgggatcatt ttgagtgctc ctgtacaggt ctgccctttt aatgccttta
4021 catcactggc tattggctgt gtttttactg ttgtgtggat ttgatttgtt ttatatactg
4081 tatgaagttt tttcatttgt gcttgtattg ctgtttgtaa gttttttact agagtttgta
4141 ttccccctgc tcagatttta tatggtttaa gctgcagcaa taaaaatgag tgcacgaaaa
4201 agagtaaaac gtgccagtgc ctatgacctg tacaggacat gcaagcaagc gggcacatgt
4261 ccaccagatg tgataccaaa ggtagaagga gatactatag cagataaaat tttgaaattt
4321 gggggtcttg caatctactt aggagggcta ggaataggaa catggtctac tggaagggtt
4381 gctgcaggtg gatcaccaag gtacacacca ctccgaacag cagggtccac atcatcgctt
4441 gcatcaatag gatccagagc tgtaacagca gggacccgcc ccagtatagg tgcgggcatt
4501 cctttagaca cccttgaaac tcttggggcc ttgcgtccag gggtgtatga ggacactgtg
4561 ctaccagagg cccctgcaat agtcactcct gatgctgttc ctgcagattc agggcttgat
4621 gccctgtcca taggtacaga ctcgtccacg gagaccctca ttactctgct agagcctgag
4681 ggtcccgagg acatagcggt tcttgagctg caacccctgg accgtccaac ttggcaagta
4741 agcaatgctg ttcatcagtc ctctgcatac cacgcccctc tgcagctgca atcgtccatt
4801 gcagaaacat ctggtttaga aaatattttt gtaggaggct cgggtttagg ggatacagga
4861 ggagaaaaca ttgaactgac atacttcggg tccccacgaa caagcacgcc ccgcagtatt
4921 gcctctaaat cacgtggcat tttaaactgg ttcagtaaac ggtactacac acaggtgccc
4981 acggaagatc ctgaagtgtt ttcatcccaa acatttgcaa acccactgta tgaagcagaa
5041 ccagctgtgc ttaagggacc tagtggacgt gttggactca gtcaggttta taaacctgat
5101 acacttacaa cacgtagcgg gacagaggtg ggaccacagc tacatgtcag gtactcattg
5161 agtactatac atgaagatgt agaagcaatc ccctacacag ttgatgaaaa tacacaggga
5221 cttgcattcg tacccttgca tgaagagcaa gcaggttttg aggagataga attagatgat
5281 tttagtgaga cacatagact gctacctcag aacacctctt ctacacctgt tggtagtggt
5341 gtacgaagaa gcctcattcc aactcaggaa tttagtgcaa cacggcctac aggtgttgta
5401 acctatggct cacctgacac ttactctgct agcccagtta ctgaccctga ttctacctct
5461 cctagtctag ttatcgatga cactactact acaccaatca ttataattga tgggcacaca
5521 gttgatttgt acagcagtaa ctacaccttg catccctcct tgttgaggaa acgaaaaaaa
5581 cggaaacatg cctaattttt tttgcagatg gcgttgtggc aacaaggcca gaagctgtat
5641 ctccctccaa cccctgtaag caaggtgctt tgcagtgaaa cctatgtgca aagaaaaagc
5701 attttttatc atgcagaaac ggagcgcctg ctaactatag gacatccata ttacccagtg
5761 tctatcgggg ccaaaactgt tcctaaggtc tctgcaaatc agtatagggt atttaaaata
5821 caactacctg atcccaatca atttgcacta cctgacagga ctgttcacaa cccaagtaaa
5881 gagcggctgg tgtgggcagt cataggtgtg caggtgtcca gagggcagcc tcttggaggt
5941 actgtaactg ggcaccccac ttttaatgct ttgcttgatg cagaaaatgt gaatagaaaa
6001 gtcaccaccc aaacaacaga tgacaggaaa caaacaggcc tagatgctaa gcaacaacag
6061 attctgttgc taggctgtac ccctgctgaa ggggaatatt ggacaacagc ccgtccatgt
6121 gttactgatc gtctagaaaa tggcgcctgc cctcctcttg aattaaaaaa caagcacata
6181 gaagatgggg atatgatgga aattgggttt ggtgcagcca acttcaaaga aattaatgca
6241 agtaaatcag atctacctct tgacattcaa aatgagatct gcttgtaccc agactacctc
6301 aaaatggctg aggacgctgc tggtaatagc atgttctttt ttgcaaggaa agaacaggtg
6361 tatgttagac acatctggac cagagggggc tcggagaaag aagcccctac cacagatttt
6421 tatttaaaga ataataaagg ggatgccacc cttaaaatac ccagtgtgca ttttggtagt
6481 cccagtggct cactagtctc aactgataat caaattttta atcggcccta ctggctattc
6541 cgtgcccagg gcatgaacaa tggaattgca tggaataatt tattgttttt aacagtgggg
6601 gacaatacac gtggtactaa tcttaccata agtgtagcct cagatggaac cccactaaca
6661 gagtatgata gctcaaaatt caatgtatac catagacata tggaagaata taagctagcc
6721 tttatattag agctatgctc tgtggaaatc acagctcaaa ctgtgtcaca tctgcaagga
6781 cttatgccct ctgtgcttga aaattgggaa ataggtgtgc agcctcctac ctcatcgata
6841 ttagaggaca cctatcgcta tatagagtct cctgcaacta aatgtgcaag caatgtaatt
6901 cctgcaaaag aagaccctta tgcagggttt aagttttgga acatagatct taaagaaaag
6961 ctttctttgg acttagatca atttcccttg ggaagaagat ttttagcaca gcaaggggca
7021 ggatgttcaa ctgtgagaaa acgaagaatt agccaaaaaa cttccagtaa gcctgcaaaa
7081 aaaaaaaaaa aataaaagct aagtttctat aaatgttctg taaatgtaaa acagaaggta
7141 agtcaactgc acctaataaa aatcacttaa tagcaatgtg ctgtgtcagt tgtttattgg
7201 aaccacaccc ggtacacatc ctgtccagca tttgcagtgc gtgcattgaa ttattgtgct
7261 ggctagactt catggcgcct ggcaccgaat cctgccttct cagcgaaaat gaataattgc
7321 tttgttggca agaaactaag catcaatggg acgcgtgcaa agcaccggcg gcggtagatg
7381 cggggtaagt actgaatttt aattcgacct atcccggtaa agcgaaagcg acacgctttt
7441 ttttcacaca tagcgggacc gaacacgtta taagtatcga ttaggtctat ttttgtctct
7501 ctgtcggaac cagaactggt aaaagtttcc attgcgtctg ggcttgtcta tcattgcgtc
7561 tctatggttt ttggaggatt agacggggcc accagtaatg gtgcatagcg gatgtctgta
7621 ccgccatcgg tgcaccgata taggtttggg gctccccaag ggactgctgg gatgacagct
7681 tcatattata ttgaatgggc gcataatcag cttaattggt gaggacaagc tacaagttgt
7741 aacctgatct ccacaaagta cgttgccggt cggggtcaaa ccgtcttcgg tgctcgaaac
7801 cgccttaaac tacagacagg tcccagccaa gtaggcggat caaaacctca aaaaggcggg
7861 agccaatcaa aatgcagcat tatattttaa gctcaccgaa accggtaagt aaagactatg
7921 tattttttcc cagtgaataa ttgtt
//