GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS PV1RH1 5176 bp ds-DNA VRL 28-MAY-1991
DEFINITION Parvovirus h-1, complete genome
ACCESSION X01457 J02198
KEYWORDS genome; origin of replication.
SOURCE Parvovirus H1 DNA.
ORGANISM Parvovirus H1
Viridae; ss-DNA nonenveloped viruses; Parvoviridae; Parvovirus.
REFERENCE 1 (bases 4435 to 5176)
AUTHORS Rhode,S.L.III. and Klaassen,B.
TITLE Dna sequence of the 5' terminus containing the replication origin
of parvovirus replicative form dna
JOURNAL J. Virol. 41, 990-999 (1982)
STANDARD full automatic
REFERENCE 2 (bases 1 to 4534)
AUTHORS Rhode,S.L.III. and Paradiso,P.R.
TITLE Parvovirus genome: nucleotide sequence of h-1 and mapping of its
genes by hybrid-arrested translation
JOURNAL J. Virol. 45, 173-184 (1983)
STANDARD full automatic
COMMENT EPD; 11211; H-1[+.04]. EPD; 11212; H-1[+.40]. SWISS-PROT; P03133;
VNCP$PAVHH. SWISS-PROT; P03136; COAT$PAVHH.
The viral genome (- strand) is the complementary strand to that
shown below (+ strand). [1] discusses other major open reading
frames, but was uncertain as to exact boundaries and/or splicing
locations. the non-capsid protein in the features table is
speculatively identified as the rf rep gene product: either the
postulated site-specific nickase, or the terminal bound protein, or
both [1].
From EMBL entry PARH1; dated 02-JUL-1986.
FEATURES Location/Qualifiers
CDS 264..2282
/note="Non-capsid protein"
/codon_start=264
modified_base complement(5176..5176)
/mod_base=other
/note="5' terminal protein attachment site"
BASE COUNT 1638 a 1127 c 1166 g 1245 t
ORIGIN
1 catttttaga actgaccaac catgttcacg caagtgacgt gatgacgcgc gctgcgcgcg
61 ctgccttcgg cagtcacacg tcactagcgt ttcacatggt tggtcagttc taaaaatgat
121 aagcggttca gagagtttga aaccaaggcg ggaaacggaa gtgggcgtgg ctaactgtat
181 ataagcagtc actctggtcg gttactcact ctgctttcat ttctgagttt gtgagacaca
241 ggagcgagac taaccaacta accatggctg gaaacgctta ctccgatgag gttttgggag
301 taacaaactg gctgaaggac aaaagtagcc aggaggtgtt ctcatttgtt tttaaaaatg
361 aaaacgtcca actaaatgga aaggacatcg gttggaatag ttacagaaag gagctacaag
421 atgacgagct gaagtctcta caacgagggg cggagaccac ttgggaccaa agcgaggaca
481 tggaatggga gagcgcagtg gatgacatga ccaaaaagca agtatttatt tttgattctt
541 tggttaagaa gtgtttgttt gaagtgctca gcacaaagaa catagctcct agtaatgtta
601 cttggttcgt gcagcatgaa tggggaaagg acccaggctg gcactgtcat gtgctgattg
661 gaggcaagga ctttagtcaa cctcaaggaa aatggtggag aaggcagcta aatgtgtact
721 ggagtagatg gttggtgact gcctgtaatg ttcaactaac accagctgaa agaattaaac
781 tgagagaaat agcagaggac agtgaatggg tcactttgct tacctataag cataagcaca
841 ccaagaagga ctataccaag tgtgttcttt ttggaaacat gattgcttat tactttttaa
901 gcaaaaagaa aatatgtacc agtccaccaa gggacggagg ctattttctt agcagtgact
961 ctggctggaa aactaacttt ttgaaagagg gcgagcgcca tctagtgagc aaactgtata
1021 ctgatgagat gaaaccagaa acggtcgaga ccacagtgac cactgcacag gaagctaagc
1081 gcggcagaat tcaaactaga gaggaggtct cgattaaaac cacactcaaa gagttggtac
1141 ataaaagagt aacctcacca gaagactgga tgatgatgca gccagacagt tacattgaaa
1201 tgatggctca accaggtgga gaaaacttgc ttaaaaatac actagagatc tgtacactga
1261 ctctagcaag aaccaaaaca gcctttgact tgattctgga aaaagctgaa accagcaaac
1321 tagccaactt ttccatggct agcaccagaa cctgtagaat ctttgctgag catggctgga
1381 actatattaa agtctgccat gccatctgtt gtgtgctgaa tagacaagga ggcaaaagga
1441 acactgtgct ctttcacgga ccagccagca caggcaaatc tattattgca caagccatag
1501 cacaagcagt tggtaatgtt ggttgttaca atgctgccaa tgtgaacttt ccatttaatg
1561 actgtaccaa caaaaacttg atttgggtgg aagaagctgg taactttggc cagcaagtaa
1621 accaattcaa agctatttgt tctggccaaa ccatacgcat tgatcaaaaa ggaaaaggca
1681 gcaaacagat tgaaccaaca ccagttatta tgaccaccaa cgagaacatt accgtggtta
1741 gaataggctg tgaggaaaga ccagaacaca ctcaaccaat cagagacaga atgctcaaca
1801 ttcacctgac acgtacacta cctggtgact ttggtttggt ggataagcac gaatggcctc
1861 tgatctgtgc ttggttggtg aagaatggtt accaatctac catggcttgt tactgtgcta
1921 aatggggcaa agttcctgat tggtcagagg actgggcgga gccgaagcta gacactccta
1981 taaattcgct aggttcaatg cgctcaccat ctctgactcc gagaagtacg cctctcagcc
2041 aaaactacgc tcttactcca cttgcatcgg accttgcgga cctagctcta gagccttgga
2101 gcacaccaaa tactcctgtt gcgggcactg cagcaagcca aaacactggg gaggctggtt
2161 ccacagcctg ccaaggtgct caacggagcc caacctggtc cgagatcgag gcggatttga
2221 gagcttgctt cagtcaagaa cagttggaga gcgacttcaa cgaggagctg accttggact
2281 aaggtacaat ggcacctcca gctaaaagag ctaaaagagg taaggggcta agggatggtt
2341 ggttggtggg gtactaatgt atgactacct gttttacagg cctgaaatca cttggttcta
2401 ggttgggtgc ctcctggcta caagtacctg ggaccaggga acagccttga ccaaggagaa
2461 ccaaccaacc cttctgacgc cgctgccaaa gaacacgacg aagcctacga ccaatacatc
2521 aaatctggaa aaaatcctta cctgtacttc tctcctgctg atcaacgctt cattgaccaa
2581 accaaagacg ccaaggactg gggcggcaag gttggtcact acttttttag aaccaagcga
2641 gcttttgcac ctaagctttc tactgactct gaacctggca cttctggtgt gagcagacct
2701 ggtaaacgaa ctaaaccacc tgctcacatt tttgtaaatc aagccagagc taaaaaaaaa
2761 cgcgcttctc ttgctgcaca gcagaggact ctgacaatga gtgatggcac cgaaacaaac
2821 caaccagaca ctggaatcgc taatgctaga gttgagcgat cagctgacgg aggtggaagc
2881 tctgggggtg ggggctctgg cgggggtggg attggtgttt ctactgggac ttatgataat
2941 caaacgactt ataagttttt gggagatgga tgggtagaaa taactgcaca tgcttctaga
3001 cttttgcact tgggaatgcc tccttcagaa aactactgcc gcgtcaccgt tcacaataat
3061 caaacaacag gacacggaac taaggtaaag ggaaacatgg cctatgacac acatcaacaa
3121 atttggacac catggagctt ggtagatgct aatgcttggg gagtttggtt ccaaccaagt
3181 gactggcagt tcattcaaaa cagcatggaa tcgctgaatc ttgactcatt gagccaagaa
3241 ctatttaatg tagtagtcaa aacagtcact gaacaacaag gagctggcca agatgccatt
3301 aaagtctata ataatgactt gacggcctgt atgatggttg ctctggatag taacaacata
3361 ctgccttaca cacctgcagc tcaaacatca gaaacacttg gtttctaccc atggaaacca
3421 accgcaccag ctccttacag atactacttt ttcatgccta gacaactcag tgtaacctct
3481 agcaactctg ctgaaggaac tcaaatcaca gacaccattg gagagccaca ggcactaaac
3541 tctcaatttt ttactattga gaacaccttg cctattactc tcctgcgcac aggtgatgag
3601 tttacaactg gcacctacat ctttaacact gacccactta aacttactca cacatggcaa
3661 accaacagac acttggcatg cctccaagga ataactgacc taccaacatc agatacagca
3721 acagcatcac taactgcaaa tggagacaga tttggatcaa cacaaacaca gaatgtgaac
3781 tatgtcacag aggctttgcg caccaggcct gctcagattg gcttcatgca acctcatgac
3841 aactttgaag caaacagagg tggcccattt aaggttccag tggtaccgct agacataaca
3901 gctggcgagg accatgatgc aaacggagcc atacgattta actatggcaa acaacatggc
3961 gaagattggg ccaaacaagg agcagcacca gaaaggtaca catgggatgc aattgatagt
4021 gcagctggga gggacacagc tagatgcttt gtacaaagtg caccaatatc tattccacca
4081 aaccaaaacc agatcttgca gcgagaagac gccatagctg gcagaactaa catgcattat
4141 actaatgttt ttaacagcta tggtccactt agtgcatttc ctcatccaga tcccatttat
4201 ccaaatggac aaatttggga caaagaattg gacctggaac acaaacctag actacacgta
4261 actgcaccat ttgtttgtaa aaacaaccca ccaggtcaac tatttgttca cttggggcct
4321 aatctgactg accaatttga cccaaacagc acaactgttt ctcgcattgt tacatatagc
4381 actttttact ggaagggtat tttgaaattc aaagccaaac taagaccaaa tctgacctgg
4441 aatcctgtat accaagcaac cacagactct gttgccaatt cttacatgaa tgttaagaaa
4501 tggctcccat ctgcaactgg caacatgcac tctgatccat tgatttgtag acctgtgcct
4561 cacatgacat actaaccaac caactatgtt tctctgtttg cttcacataa tacttaaact
4621 aactagacta caacataaaa atatacactt aataatagat tattaaaaat aacataatat
4681 ggtaggttaa ctgtaaaaaa taatagaact tttggaataa atatagttag ttggttaatg
4741 ttagatagaa tataaaaaga ttttgtattt taaaataaat atagttagtt ggttaatgtt
4801 agatagaata taaaaagatt ttgtatttgg gaaataaaaa gggtggttgg gtggttggtt
4861 ggtactccct tagactgaat gttagggacc aaaaaaataa taaaataatt aaaatgaaca
4921 aggactactg tctattcagt tgaccaactg aacctatagt atcactatgt ttttagggtg
4981 ggggggtggg agatacatac gttcgctatg gaccaagtgg taccggttgg ttgctaagct
5041 cgaacaagac ggctaagccg gtccggttgg ttgagcgcaa ccaaccggta ccacttggtc
5101 catagcgaac gtatgtatct cccacccccc caccctaaaa acatagtgat actataggtt
5161 cagttggtca actgaa
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