GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS APHFMD1 2820 bp ss-mRNA VRL 28-MAY-1991
DEFINITION FMDV genes for the structural capsid proteins VP1, VP2, and VP3.
ACCESSION V01130
KEYWORDS coat protein; polyprotein.
SOURCE Foot and mouth disease virus RNA.
ORGANISM Foot and mouth disease virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Picornaviridae; Aphthovirus.
REFERENCE 1 (bases 1 to 2820)
AUTHORS Boothroyd,J.C., Harris,T.J., Rowlands,D.J. and Lowe,P.A.
TITLE The nucleotide sequence of cDNA coding for the structural proteins
of foot-and-mouth disease virus
JOURNAL Gene 17, 153-161 (1982)
STANDARD full automatic
COMMENT From EMBL entry PIFMD1; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 20..>2820
/note="polyprotein reading frame (2820 is 2nd base in
codon)"
/codon_start=20
CDS 20..328
/note="P20A reading frame"
/codon_start=20
CDS 329..535
/note="VP4 reading frame"
/codon_start=329
CDS 536..1189
/note="VP2 reading frame"
/codon_start=536
CDS 1190..1852
/note="VP3 reading frame"
/codon_start=1190
CDS 1853..2488
/note="VP1 reading frame"
/codon_start=1853
CDS 2489..>2820
/note="P52 reading frame"
/codon_start=2489
BASE COUNT 709 a 812 c 710 g 589 t
ORIGIN
1 ctgcaggggg ggggggggta tcggtaccgc ctcgcgaccc agcgaggtgt gtatggtaga
61 cggcacggac atgtgtcttg ctgatttcca cgcaggcatt ttcatgaaag gacaggaaca
121 cgcagtgttc gcgtgtgtca cctcagacgg gtggtacgcg attgacgacg aggactttta
181 cccgtggacg cctgacccat cggacgtctt ggtatttgtc ccgtacgatc aagaaccact
241 caatggggac tggaaaacac aggttcagaa gaagctcaag ggtgctgggc agtccagccc
301 agcaaccggc tcgcagaacc agtctggcaa cactggcagc ataattaaca actactacat
361 gcagcaatac cagaactcta tgagcacaca gcttggtgac aataccatca gtggaggctc
421 caacgagggc tccacggaca caacttcaac acacacaacc aacacccaaa acaacgactg
481 gttttcaaaa cttgccagtt cggcttttac cggtctgttc ggtgcacttc tcgccgacaa
541 gaagacggaa gagactacgc ttctggaaga ccgcatcctc actacccgca acgggcacac
601 cacttcgacc acccagtcga gtgtgggagt cacgtatggg tactccactg aggaagatca
661 cgttgctggg cccaacacat cgggcttaga gacgcgggtg gtgcaggcag agagattttt
721 caagaagttt ctgtttgact ggacaacgga caaacctttt ggatacttga caaaactgga
781 gcttcccacc gatcaccacg gtgtcttcgg gcacttggtg gactcatatg catatatgag
841 gaacggctgg gatgttgagg tatgtgccgt cggcaaccag ttcaacggcg ggtgccttct
901 ggtggccatg gtgccagagt ggaaggcatt tgacacacgt gaaaaatacc agcttaccct
961 tttcccacac cagtttatta gccccagaac taacatgact gcccacatca cggtaccgta
1021 tcttggtgtg aacaggtacg atcagtacaa gaaacacaaa ccttggacac tggttgtcat
1081 ggtactatca cccctcacgg tcagcaacac tgccgcccca caaatcaagg tctacgccaa
1141 cattgcccca acctacgttc acgtggctgg agagcttccc tcgaaagagg ggattttccc
1201 agttgcatgc gcagacggtt acggaggact ggtgacaaca gacccgaaaa cagctgaccc
1261 tgtttacggt aaggtgtata acccgcccaa gaccaactac cccgggcgct ttacaaacct
1321 attggacgtg gccgaagcat gtcccacctt tcttcgtttc gacgatggga aaccgtacgt
1381 cgttacgcgg gcagacgaca cccgtctttt ggccaagttt gatgtctccc ttgccgcaaa
1441 acacatgtcc aacacatacc tatcagggat tgcacagtac tacacacagt actctggtac
1501 tatcaacctg cacttcatgt tcacaggctc cactgactca aaagcccgct acatggtggc
1561 ttacatcccg cttggggtgg agacgccgcc ggacacacct gaagaagctg ctcactgcat
1621 tcacgctgag tgggacacag gactgaactc caaattcacc ttttcaatcc cttacgtgtc
1681 tgccgcggat tacgcgtata ccgcatctga tacggcagag acaaccaatg tacagggatg
1741 ggtctgtgtt taccaaatta cacacgggaa ggctgaaaat gacaccttgt tagtgtcggc
1801 tagcgccggc aaagactttg agttgcgcct cccaattgac ccccggacac aaaccactac
1861 tactggggag tccgcagacc ctgtcaccac caccgtggag aactacggcg gtgatacaca
1921 agtccagaga cgtcaccaca cggacgtcgg cttcattatg gaccgatttg tgaagataaa
1981 cagcctgagc cccacacatg tcattgacct catgcaaacc cacaaacacg ggatcgtggg
2041 tgcgttactg cgtgcagcca cgtactactt ctccgacttg gagattgttg tgcggcacga
2101 tggtaatctg acctgggtgc ccaacggtgc ccccgaggca gccctgtcaa acaccagcaa
2161 ccccactgcc tacaacaagg caccgttcac gagacttgct ctcccttaca ctgcgccaca
2221 ccgcgtgttg gcaactgtgt acgacgggac aaacaagtac tccgcaagcg attcgagatc
2281 aggcgacctg gggtccatcg cggcgcgagt cgcgacacaa cttcctgctt cctttaacta
2341 cggtgcaatc caggcacagg ccatccacga gcttctcgtg cgcatgaaac gggccgagct
2401 ctactgtccc aggccacttc tagcaataaa ggtgacttcg caagacaggt acaagcaaaa
2461 gattattgcg cccgcaaaac agctgttgaa ctttgaccta cttaagttgg cgggtgacgt
2521 tgagtccaac cttgggccct tcttcttcgc tgacgttagg tcaaactttt cgaagctggt
2581 agacaccatc aatcagatgc aggaggacat gtccacaaaa cacggacccg actttaaccg
2641 gttggtgtcc gcttttgagg aattggccac tggggttaaa gctatcagaa ccggtctcga
2701 tgaggccaaa ccctggtaca agctcatcaa gctcctaagc cgtctgtcgt gcatggccgc
2761 tgtggcagca cggtccaagg acccagtcct tgtggccatc atgctggccg acaccggtct
//