GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS APHFMD1 2820 bp ss-mRNA VRL 28-MAY-1991 DEFINITION FMDV genes for the structural capsid proteins VP1, VP2, and VP3. ACCESSION V01130 KEYWORDS coat protein; polyprotein. SOURCE Foot and mouth disease virus RNA. ORGANISM Foot and mouth disease virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Aphthovirus. REFERENCE 1 (bases 1 to 2820) AUTHORS Boothroyd,J.C., Harris,T.J., Rowlands,D.J. and Lowe,P.A. TITLE The nucleotide sequence of cDNA coding for the structural proteins of foot-and-mouth disease virus JOURNAL Gene 17, 153-161 (1982) STANDARD full automatic COMMENT From EMBL entry PIFMD1; dated 06-JUL-1989. FEATURES Location/Qualifiers CDS 20..>2820 /note="polyprotein reading frame (2820 is 2nd base in codon)" /codon_start=20 CDS 20..328 /note="P20A reading frame" /codon_start=20 CDS 329..535 /note="VP4 reading frame" /codon_start=329 CDS 536..1189 /note="VP2 reading frame" /codon_start=536 CDS 1190..1852 /note="VP3 reading frame" /codon_start=1190 CDS 1853..2488 /note="VP1 reading frame" /codon_start=1853 CDS 2489..>2820 /note="P52 reading frame" /codon_start=2489 BASE COUNT 709 a 812 c 710 g 589 t ORIGIN 1 ctgcaggggg ggggggggta tcggtaccgc ctcgcgaccc agcgaggtgt gtatggtaga 61 cggcacggac atgtgtcttg ctgatttcca cgcaggcatt ttcatgaaag gacaggaaca 121 cgcagtgttc gcgtgtgtca cctcagacgg gtggtacgcg attgacgacg aggactttta 181 cccgtggacg cctgacccat cggacgtctt ggtatttgtc ccgtacgatc aagaaccact 241 caatggggac tggaaaacac aggttcagaa gaagctcaag ggtgctgggc agtccagccc 301 agcaaccggc tcgcagaacc agtctggcaa cactggcagc ataattaaca actactacat 361 gcagcaatac cagaactcta tgagcacaca gcttggtgac aataccatca gtggaggctc 421 caacgagggc tccacggaca caacttcaac acacacaacc aacacccaaa acaacgactg 481 gttttcaaaa cttgccagtt cggcttttac cggtctgttc ggtgcacttc tcgccgacaa 541 gaagacggaa gagactacgc ttctggaaga ccgcatcctc actacccgca acgggcacac 601 cacttcgacc acccagtcga gtgtgggagt cacgtatggg tactccactg aggaagatca 661 cgttgctggg cccaacacat cgggcttaga gacgcgggtg gtgcaggcag agagattttt 721 caagaagttt ctgtttgact ggacaacgga caaacctttt ggatacttga caaaactgga 781 gcttcccacc gatcaccacg gtgtcttcgg gcacttggtg gactcatatg catatatgag 841 gaacggctgg gatgttgagg tatgtgccgt cggcaaccag ttcaacggcg ggtgccttct 901 ggtggccatg gtgccagagt ggaaggcatt tgacacacgt gaaaaatacc agcttaccct 961 tttcccacac cagtttatta gccccagaac taacatgact gcccacatca cggtaccgta 1021 tcttggtgtg aacaggtacg atcagtacaa gaaacacaaa ccttggacac tggttgtcat 1081 ggtactatca cccctcacgg tcagcaacac tgccgcccca caaatcaagg tctacgccaa 1141 cattgcccca acctacgttc acgtggctgg agagcttccc tcgaaagagg ggattttccc 1201 agttgcatgc gcagacggtt acggaggact ggtgacaaca gacccgaaaa cagctgaccc 1261 tgtttacggt aaggtgtata acccgcccaa gaccaactac cccgggcgct ttacaaacct 1321 attggacgtg gccgaagcat gtcccacctt tcttcgtttc gacgatggga aaccgtacgt 1381 cgttacgcgg gcagacgaca cccgtctttt ggccaagttt gatgtctccc ttgccgcaaa 1441 acacatgtcc aacacatacc tatcagggat tgcacagtac tacacacagt actctggtac 1501 tatcaacctg cacttcatgt tcacaggctc cactgactca aaagcccgct acatggtggc 1561 ttacatcccg cttggggtgg agacgccgcc ggacacacct gaagaagctg ctcactgcat 1621 tcacgctgag tgggacacag gactgaactc caaattcacc ttttcaatcc cttacgtgtc 1681 tgccgcggat tacgcgtata ccgcatctga tacggcagag acaaccaatg tacagggatg 1741 ggtctgtgtt taccaaatta cacacgggaa ggctgaaaat gacaccttgt tagtgtcggc 1801 tagcgccggc aaagactttg agttgcgcct cccaattgac ccccggacac aaaccactac 1861 tactggggag tccgcagacc ctgtcaccac caccgtggag aactacggcg gtgatacaca 1921 agtccagaga cgtcaccaca cggacgtcgg cttcattatg gaccgatttg tgaagataaa 1981 cagcctgagc cccacacatg tcattgacct catgcaaacc cacaaacacg ggatcgtggg 2041 tgcgttactg cgtgcagcca cgtactactt ctccgacttg gagattgttg tgcggcacga 2101 tggtaatctg acctgggtgc ccaacggtgc ccccgaggca gccctgtcaa acaccagcaa 2161 ccccactgcc tacaacaagg caccgttcac gagacttgct ctcccttaca ctgcgccaca 2221 ccgcgtgttg gcaactgtgt acgacgggac aaacaagtac tccgcaagcg attcgagatc 2281 aggcgacctg gggtccatcg cggcgcgagt cgcgacacaa cttcctgctt cctttaacta 2341 cggtgcaatc caggcacagg ccatccacga gcttctcgtg cgcatgaaac gggccgagct 2401 ctactgtccc aggccacttc tagcaataaa ggtgacttcg caagacaggt acaagcaaaa 2461 gattattgcg cccgcaaaac agctgttgaa ctttgaccta cttaagttgg cgggtgacgt 2521 tgagtccaac cttgggccct tcttcttcgc tgacgttagg tcaaactttt cgaagctggt 2581 agacaccatc aatcagatgc aggaggacat gtccacaaaa cacggacccg actttaaccg 2641 gttggtgtcc gcttttgagg aattggccac tggggttaaa gctatcagaa ccggtctcga 2701 tgaggccaaa ccctggtaca agctcatcaa gctcctaagc cgtctgtcgt gcatggccgc 2761 tgtggcagca cggtccaagg acccagtcct tgtggccatc atgctggccg acaccggtct //