GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SVDSVDV 7400 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Swine vesicular disease virus complete genomic RNA
ACCESSION X54521
KEYWORDS capsid protein; complementary DNA; non-structural protein;
polymerase; protease.
SOURCE Swine vesicular disease virus RNA.
ORGANISM Swine vesicular disease virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Picornaviridae; Enterovirus.
REFERENCE 1 (sites)
AUTHORS Minor,P.D., Schild,G.C., Bootman,J., Evans,D.M., Ferguson,M.,
Reeve,P., Spitz,M., Stanway,G., Cann,A.J., Hauptmann,R.,
Clarke,L.D., Mountford,R.C. and Almond,J.W.
TITLE Location and primary structure of a major antigenic site for
poliovirus neutralization
JOURNAL Nature 301, 674-679 (1983)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 7400)
AUTHORS McCauley,J.W.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 3 (bases 1 to 7400)
AUTHORS Seechurn,P., Knowles,N.J. and McCauley,J.W.
TITLE The complete nucleotide sequence of a pathogenic swine vesicular
disease virus
JOURNAL Virus Res. 16, 255-274 (1990)
STANDARD full automatic
COMMENT Submitted (22-AUG-1990) on tape to the EMBL Data Library by:
McCauley J.W., AFRC Institute for Animal Health, Labaratory, Ash
Rd., Pirbright, Woking, Surrey, U.K__
From EMBL entry PISVDV; dated 27-SEP-1990.
FEATURES Location/Qualifiers
CDS 743..7297
/note="virus polyprotein"
/codon_start=743
CDS 743..949
/note="1A protein, VP4"
/codon_start=743
CDS 950..1732
/note="1b protein, VP2"
/codon_start=950
CDS 1733..2446
/note="1C protein, VP3"
/codon_start=1733
CDS 2447..3295
/note="1D protein, VP4"
/codon_start=2447
CDS 3296..3745
/note="2A protein, protease"
/codon_start=3296
CDS 3746..4042
/note="2B protein"
/codon_start=3746
CDS 4043..5029
/note="2C protein"
/codon_start=4043
CDS 5030..5296
/note="3A protein"
/codon_start=5030
CDS 5297..5362
/note="3B protein, VPg"
/codon_start=5297
CDS 5363..5911
/note="3C protein, protease"
/codon_start=5363
CDS 5912..7297
/note="3D protein, polymerase"
/codon_start=5912
polyA_site 7400..7400
/note="polyA site"
BASE COUNT 2075 a 1794 c 1869 g 1662 t
ORIGIN
1 ttaaaacagc ctgtgggttg ttcccaccca cagggcccac tgggcgctag cacactggta
61 tcacggtacc tttgtgcgcc tgtttgactt accctcccca aacgcaactt agaagcacaa
121 cttaaatggt caataggcgg ctcagtatgc caactgagtc tcgatcaagc acttctgtta
181 ccccggactg agtaccaata ggctgctcac gcggctgaag gggaaaccgt tcgttacccg
241 actaactact tcgagaaacc tagtaccacc atgaaagttg cgcacgtttc gctccgcaca
301 accccagtgt agatcaggtc gatgagtcac cgcaaacccc acgggcgacc gtggcggtgg
361 ctgcgctggc ggcctgccca tggggcaact catgggacgc ttcaatactg acatggtgcg
421 aagagtctat tgagctagtt ggtagtcctc cggcccctga atgcggctaa tcctaactgc
481 ggagcagata cccacgcacc agtgggcagt ctgtcgtaat gggcaactct gcagcggaac
541 cgactacttt gggtgtccgt gtttcctttt gttcttatac tggctactta tggtgacaat
601 tgagagattg taaccatatt gctattggat tggccacccg gcgacgaata gaacagttgc
661 ttacctgttt gttagtctcg tatcactgaa ctacaaatcc ttaaacaccc tttaatttcg
721 tcataacgct caatacgtta aaatgggagc tcaagtgtca acacaaaaga ccggtgctca
781 tgagaccagc ttgagtgcag cgggcaactc agtcattcat tacacaaaca taaactacta
841 caaggatgct gcttcgaatt cagcaaatag acaagacttc acacaggacc cggggaagtt
901 caccgaacct gtgaaagaca tcatggtcaa atccatgcct gctctcaatt ccccatcagc
961 agaggagtgt ggctacagtg acagggtaag atccatcacc ttagggaatt cgaccataac
1021 aactcaagaa tgtgcaaacg tggtagttgg atatggggtg tggccaactt acttgaagga
1081 tgaagaggca acagcagagg atcaacccac tcaaccagat gtggccacgt gcaggtttta
1141 cacgctcgaa tccgtgatgt ggcaacagag ttcaccaggc tggtggtgga agttccctga
1201 cgcgttgtcc aacatggggc tatttgggca aaatatgcag taccactacc ttgggagagc
1261 cggatacacg atacacgtgc agtgcaacgc gtccaaattt caccaagggt gtctgctggt
1321 ggtatgtgtg ccagaagcag agatggggtg tgccacgttg gccaataagc ctgacccaaa
1381 aagcctgagt aaaggggaaa tagccaacat gtttgaatcc caaaactcca ccggggaaac
1441 ggccgtgcaa gctaatgtga tcaatgctgg catgggtgtt ggtgttggta atctaactat
1501 cttcccccat cagtggatca acttgcgcac taacaacagc gctacgattg tcatgccata
1561 tataaacagc gtgcccatgg acaacatgtt cagacacaac aattttacac tcatggtcat
1621 cccgttcgcc ccactgagct acagcacagg ggctaccacg tacgtaccaa tcactgtaac
1681 agtggcgcca atgtgcgctg aatataatgg gctgcgtctg gccggcaagc aaggtttacc
1741 aacgctgtcg acacccggga gcaaccagtt tctcacgtcc gatgacttcc agtcaccatc
1801 agccatgcca caattcgatg tcactcctga gatggatatt ccaggacaag tcaacaactt
1861 gatggagatt gcagaagtag attctgtagt gcctgtaaat aacacagaag ggaaagtgat
1921 gtcaattgag gcataccaga tacctgtgca atcgaatcca accaacggtt ctcaggtttt
1981 tgggttccca ttgaccccag gggccaatag tgtgttaaac aggactttgc tgggagaaat
2041 cttaaactac tatgcccatt ggtcaggcag catcaaacta acatttatgt tttgcgggtc
2101 agcgatggct acaggaaaat tcttactggc gtactcacca ccgggagctg gggcaccgac
2161 cacacgcaag gaggcgatgc taggtactca cgtgatctgg gatgtgggtc tacaatcgag
2221 ctgcgtattg tgtataccat ggattagtca aacgcactac aggtatgtag taatggatga
2281 atacaccgct ggtggataca taacttgctg gtatcaaaca aatattgtgg tgcctgcaga
2341 tgcacagagt gactgtaaga tcttgtgttt tgtgtcggca tgtaacgatt tttcagttag
2401 gatgctcaag gacacaccct ttataaaaca ggataatttc ttccaagggc ccccaggaga
2461 ggtgatggga agagccattg cccgcgtcgc tgataccatt gggagcggac cagttaactc
2521 ggaatccatt ccagccctaa ccgccgcaga gacagggcac acgtcacaag ttgtaccatc
2581 agacacaatg caaactagac acgtgaagaa ttaccattca agatcagagt cgacagtgga
2641 gaacttcctg tgcagatctg catgcgtctt ctacaccaca tacaagaacc atgactccga
2701 tggcgacaac ttcgcctact gggtgatcaa cacacggcaa gttgctcaac tgcgtcggaa
2761 gctcgaaatg ttcacgtacg caagatttga tctggagttg accttcgtga tcactagcac
2821 tcaggaacaa cccaccgttc gaggtcaaga tgcaccagtg ctcacccacc aaataatgta
2881 tgtacctcca ggtggtccag tacccacaaa ggtaaacagc tacagctggc aaacgtccac
2941 caacccgagt gtgttctgga cggaagggag cgcaccgcct cgaatgtcga taccattcat
3001 tggcataggc aacgcataca gcatgttcta tgacgggtgg gccaggtttg acaagcaagg
3061 gacatacggc atcagcacat taaacaacat ggggacacta tatatgagac atgtgaatga
3121 tgggggtccc ggtcccattg taagcacagt acgaatttac ttcaagccaa agcacgtcaa
3181 aacgtgggtc ccaagaccgc ccagactatg tcaataccaa aaggctggca acgtgaattt
3241 tgaacccact ggtgtgactg agggtaggac agatataaca accatgaaaa ccactggcgc
3301 cttcgggcag cagtctggtg ccgtgtacgt tggcaactat agagtggtga atagacatct
3361 cgcaacgcgc gcggactggc aaaactgtgt gtgggaagac tacaacagag accttctagt
3421 gagcaccacc actgcacatg gctgcgacac cattgccagg tgtgattgca cagcaggagt
3481 gtacttctgc gcctccagaa acaagcacta tccagtcaca tttgaggggc ccggtcttgt
3541 ggaggttcaa gagagtgagt attacccgaa aaagtaccaa tcccatgtac tgctcgcagc
3601 tggatttgca gagccgggtg attgtggagg gattctcaga tgccaacatg gggtgattgg
3661 catagttacc gtgggggggg aaggtgttgt tggttttgcc gatgtaagag acttgttgtg
3721 gctggaggac gacgccatgg agcaaggagt tagggattat gtggaacaac tcggcaactg
3781 cttcggctca ggattcacca atcaaatttg cgaacaggtt acccttctaa aagagtcgtt
3841 aattggacag gattctatcc ttgagaagtc tctcaaggcc ctcgtcaaga tagtatcagc
3901 actcgtgatc gtggtgagaa atcacgatga cctcattacg gtcaccgcca cactggcgtt
3961 aataggatgc actacctcac catggcgctg gctcaagcag aaagtgtctc agtactatgg
4021 catccccatg gctgaaaggc aaaatagtgg ctggttaaag aagttcacag agatgaccaa
4081 tgcctgtaag ggcatggagt ggatagccat caagatccaa aaattcatag agtggttgaa
4141 ggttaagatc ctgccagaag tcaaggaaaa gcatgagttc ctcaacaggc ttaaacaact
4201 accactcttg gaaagtcaaa tagcaactat tgagcagagt gcaccatctc aaagtgacca
4261 ggagcaacta ttctctaatg tacagtactt tgcccactac tgtcggaagt atgcaccatt
4321 gtacgccgct gaagcaaaga gagtgttctc acttgaaaag aagatgagca attacataca
4381 gttcaagtcc aaatgccgta ttgaacctgt ctgtctcttg ctccatggca gcccaggcgc
4441 tgggaagtct gtggcaacga acttgattgg gcgctcgctc gctgagaaac tcaacagctc
4501 ggtgtactca ctaccaccag atccagacca tttcgatggt tacaaacagc aagctgttgt
4561 catcatggac gacttgtgcc agaacccgga cggtaaagat gtgtccttgt tttgtcagat
4621 ggtctccagc gttgacttcg tgcctcccat ggcggcgctt gaggaaaaag gcattctatt
4681 cacctcgccg ttcgttctcg cgtccaccaa tgcagggtca gttaacgccc ccacggtctc
4741 cgacagtaga gcactcgtaa gaaggttcca ctttgacatg aacattgagg ttgtttccat
4801 gtatagccag aacggtaaga tcaacatgcc tatggcagtt aaaacatgtg atgaggagtg
4861 ttgcccggtc aacttcaaaa agtgctgccc actagtgtgt ggcaaagcta tacaattcat
4921 agacaggagg acccaagtta ggtattcatt ggacatgctg gttaccgaaa tgtttaggga
4981 gtacaatcac agacacagcg tgggggccac cctcgaggca ttgttccaag gaccaccagt
5041 ttatagagag atcaaaatca gtgttgcccc agaaactccc ccaccaccag cagttgccga
5101 cttactgaaa tcagtagaca gtgaggccgt gagggagtac tgcaaggaga aagggtggct
5161 tataccggag gtcgattcca ccctacagat agaaaaacat gtgaacagag cgttcatatg
5221 tttgcaagct ctaaccacat ttgtctcggt tgcaggcata atatacatca tctacaaact
5281 gtttgcaggt ttccaaggcg catacacagg gatgcctaat cagaaaccca gggtgcccac
5341 cctgagacaa gccaaagtgc agggtccagc gtttgagttc gccgtggcga tgatgaaaag
5401 aaacgccagt acagtgaaaa ctgagtacgg tgaattcacc atgcttggga tttacgacag
5461 gtgggcggtg ttgccacgcc atgccaaacc tggccccacc atcttgatga acgaccaggt
5521 agtcggagtg ttggacgcca aggaactagt tgataaagat gggaccaacc tggaattgac
5581 tctcttgaag ctcaaccgca acgagaagtt tagagacatc aggggattct tagcacgaga
5641 ggaggtcgaa gtgaacgaag ctgtcctagc aataaacaca agtaaattcc cgaatatgta
5701 catacccgtg ggccgggtaa ccgactatgg gttcttaaat ctgggtggaa cccccacgaa
5761 gagaatgctc atgtacaatt tcccaactag ggcaggccag tgtgggggtg tccttatgtc
5821 aacagggaaa gtcctgggaa tacatgtagg agggaatgga caccaagggt tttcagcggc
5881 actcctcaga cactacttca acgaggagca gggtgagata gaattcattg agagctcgaa
5941 ggacgcagga tttcccgtga tcaacacccc cagcaagaca aaattggaac caagtgtgtt
6001 tcaccacgtg ttcgagggca acaaggaacc agcggttctc agaaatgggg acccacgact
6061 caaggccaac tttgaggagg caatcttctc caagtacatt ggcaatgtta acacacatgt
6121 agacgagtac atgatggagg ctgtagatca ttatgcagga caactagcca cactggacat
6181 cagcacggag cccatgaagc tagaagatgc cgtgtatggc actgaggggc tcgaagcact
6241 agacctgacc accagtgcag gttaccctta tgtggccctg ggtatcaaga aaagagacat
6301 cctatccaag aagaccagag accttaccaa gctaaaggaa tgcatggaca aatatggtct
6361 aaacctgcca atggtaacct atgtcaagga cgagttgaga tctgccgaca aagtggccaa
6421 gggaaagtcc aggctcatcg aggcttctag cctcaacgac tcagtagcaa tgaggcagac
6481 atttggaaac ctatataaga ctttccacct caacccgggc atcgttacgg gtagcgccgt
6541 tgggtgtgac ccagatgtct tttggagcaa gattcccgtc atgctcgatg gacatctcat
6601 agcgtttgac tattcaggct atgacgccag cctcagccca gtgtggttta cgtgcttgaa
6661 actcctcctg gagaagctag ggtacacaaa caaggaaacg aactacatag actacctctg
6721 taattcccac cacctgtaca gggacaaaca ctactttgtg aggggcggca tgccatcagg
6781 atgctcaggc actagcatat ttaattccat gattaacaac atcataatca gaaccctcat
6841 gctgaaggtt tataaaggca ttgatttgga ccaattcaga atgattgcat atggggatga
6901 tgtgatagct tcatacccgt ggcccatcga tgcctcactg ctagctgaag cagggaagga
6961 ttatggcttg atcatgaccc cagcagataa aggcgagtgt ttcaatgagg taacctggac
7021 aaacgtgacc ttcctgaaaa ggtacttcag ggcagatgaa cagtacccat ttttggtcca
7081 tcctgtcatg ccaatgaagg atatacacga atccattagg tggactaaag atcctaagaa
7141 cacacaggat cacgtgcgct cgctgtgtct attggcctgg cacaacgggg agcacgaata
7201 tgaggagttt attcgtaaga tcagaagcgt ccgcgtaggg cgctgcttgt ccctccctgc
7261 gttttcaacg ctgcgcagga agtggttgga ctccttttaa aattagagca caattagtca
7321 atcataattg gctcaaccct accgcatgaa ccgaacttga taaaagtgcg gtaggggtaa
7381 attctccgta ttcggtgcgg
//