GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS POLLIO1A 7433 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Genome of human poliovirus type 1 (Mahoney strain). (One of two versions.) ACCESSION V01148 KEYWORDS coat protein; genome; polyprotein. SOURCE Poliovirus type 1 RNA. ORGANISM Poliovirus type 1 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 5355 to 5522) AUTHORS Kitamura,N., Adler,C.J., Rothberg,P.G., Martinko,J., Nathenson,S.G. and Wimmer,E. TITLE The Genome-Linked Protein of Picornaviruses. VII. Genetic Mapping of Poliovirus VPg by Protein and RNA Sequence Studies JOURNAL Cell 21, 295-302 (1980) STANDARD full automatic REFERENCE 2 (bases 6375 to 7433) AUTHORS Kitamura,N. and Wimmer,E. TITLE Sequence of 1060 3'-Terminal nucleotides of poliovirus RNA as determined by a modification of the dideoxynucleotide method JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77, 3196-3200 (1980) STANDARD full automatic REFERENCE 3 (bases 1 to 7433) AUTHORS Kitamura,N., Semler,B.L., Rothberg,P.G., Larsen,G.R., Adler,C.J., Dorner,A.J., Emini,E.A., Hanecak,R., Lee,J.J., Van Der Werf,S., Anderson,C.W. and Wimmer,E. TITLE Primary structure, gene organization and polypeptide expression of poliovirus RNA JOURNAL Nature 291, 547-553 (1981) STANDARD full automatic REFERENCE 4 (bases 1 to 7432) AUTHORS Racaniello,V.R. and Baltimore,D. TITLE Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 4887-4891 (1981) STANDARD full staff_review REFERENCE 5 (sites) AUTHORS Emini,E.A., Elzinga,M. and Wimmer,E. TITLE Carboxy-Terminal Analysis of Poliovirus Proteins: Termination of Poliovirus RNA Translation and Location of Unique Poliovirus Polyprotein Cleavage Sites JOURNAL J. Virol. 42, 194-199 (1982) STANDARD full staff_review REFERENCE 6 (sites) AUTHORS Dorner,A.J., Dorner,L.F., Larsen,G.R., Wimmer,E. and Anderson,C.W. TITLE Identification of the Initiation Site of Poliovirus Polyprotein Synthesis JOURNAL J. Virol. 42, 1017-1028 (1982) STANDARD full staff_review COMMENT SWISS-PROT; P03299; POLG$POL1M. This entry was previously called PIPVX1Z1. It replaces that entry and the entries PIPVX1 and PIPVX2. See also entries <POLIO1B> (for another version of this genome) and <POLIOS1> (for the genome of the Sabin 1 strain). The sequence and features listed here are taken from [3]; conflicts with the other references are noted in the feature table. Note that [3] reports only one strand sequenced. The sequence reported in [4] is available in entry <POLIO1B>. Post-translational proteolytic cleavage of polyprotein NCVPOO produces the other peptides indicated below. Identification of reading frames is preliminary. From EMBL entry POLIO1A; dated 06-JUL-1989. FEATURES Location/Qualifiers conflict 284..286 /note="GUU is CGCTC in [4]" /citation=[4] conflict 350..350 /note="U is G in [4]" /citation=[4] conflict 385..385 /note="C is GC in [4]" /citation=[4] conflict 485..486 /note="GU is G in [4]" /citation=[4] CDS 698..7364 /note="open reading frame" /codon_start=698 CDS 741..7361 /note="reading frame NCVPOO" /codon_start=741 CDS 744..3380 /note="reading frame P1-1a" /codon_start=744 CDS 744..1760 /note="reading frame P1-VPO" /codon_start=744 CDS 744..947 /note="reading frame P1-VP4" /codon_start=744 CDS 948..1760 /note="reading frame P1-VP2" /codon_start=948 conflict 1465..1465 /note="G is GG in [4]" /citation=[4] conflict 1526..1526 /note="C is CC in [4]" /citation=[4] conflict 1530..1530 /note="C is CC in [4]" /citation=[4] conflict 1542..1542 /note="U is C in [4]" /citation=[4] conflict 1574..1574 /note="A is C in [4]" /citation=[4] conflict 1596..1596 /note="C is A in [4]" /citation=[4] conflict 1663..1663 /note="U is C in [4]" /citation=[4] CDS 1761..2474 /note="reading frame P1-VP3" /codon_start=1761 conflict 1996..1996 /note="C is A in [4]" /citation=[4] conflict 1999..2002 /note="CCU is AUC in [4]" /citation=[4] conflict 2030..2030 /note="C is U in [4]" /citation=[4] conflict 2128..2128 /note="C is U in [4]" /citation=[4] conflict 2281..2281 /note="G is C in [4]" /citation=[4] CDS 2475..3380 /note="reading frame P1-VP1" /codon_start=2475 conflict 2978..2978 /note="A is G in [4]" /citation=[4] conflict 3038..3038 /note="G is A in [4]" /citation=[4] conflict 3298..3298 /note="G is GG in [4]" /citation=[4] conflict 3302..3303 /note="GC is G in [4]" /citation=[4] CDS 3381..5105 /note="reading frame P2-3b" /codon_start=3381 conflict 3652..3652 /note="U is C in [4]" /citation=[4] conflict 3691..3691 /note="A is C in [4]" /citation=[4] conflict 3761..3761 /note="A is C in [4]" /citation=[4] CDS 3828..5105 /note="reading frame P2-5b" /codon_start=3828 CDS 4119..5105 /note="reading frame P2-X" /codon_start=4119 conflict 4154..4155 /note="CC is C in [4]" /citation=[4] conflict 4159..4159 /note="G is GC in [4]" /citation=[4] conflict 4169..4169 /note="C is A in [4]" /citation=[4] CDS 5106..7361 /note="reading frame P3-1b" /codon_start=5106 conflict 5108..5108 /note="C is A in [4]" /citation=[4] CDS 5367..5432 /note="reading frame P3-VPg" /codon_start=5367 CDS 5433..7361 /note="reading frame P3-2" /codon_start=5433 CDS 5433..5978 /note="reading frame P3-7c" /codon_start=5433 conflict 5593..5593 /note="C is U in [4]" /citation=[4] conflict 5614..5618 /note="UGUUU is CGCUC in [4]" /citation=[4] conflict 5640..5640 /note="U is C in [4]" /citation=[4] conflict 5781..5781 /note="C is G in [4]" /citation=[4] conflict 5898..5899 /note="AA is AAA in [4]" /citation=[4] conflict 5921..5923 /note="GGA is GGGAA in [4]" /citation=[4] conflict 5962..5963 /note="UA is AC in [4]" /citation=[4] CDS 5979..7361 /note="reading frame P3-4b" /codon_start=5979 conflict 5989..5989 /note="C is A in [4]" /citation=[4] conflict 6011..6011 /note="C is A in [4]" /citation=[4] conflict 6013..6013 /note="C is U in [4]" /citation=[4] conflict 6253..6253 /note="U is C in [4]" /citation=[4] conflict 6837..6839 /note="CCA is CA in [2]" /citation=[1] conflict 6970..6971 /note="UU is UUU in [2]" /citation=[1] conflict 7250..7250 /note="U is UU in [2]" /citation=[1] conflict 7402..7402 /note="C is U in [4]" /citation=[4] conflict 7432..7433 /note="GG is G in [4]" /citation=[4] BASE COUNT 2200 a 1732 c 1708 g 1793 t ORIGIN 1 ttaaaacagc tctggggttg tacccacccc agaggcccac gtggcggcta gtactccggt 61 attgcggtac ccttgtacgc ctgttttata ctcccttccc gtaacttaga cgcacaaaac 121 caagttcaat agaagggggt acaaaccagt accaccacga acaagcactt ctgtttcccc 181 ggtgatgtcg tatagactgc ttgcgtggtt gaaagcgacg gatccgttat ccgcttatgt 241 acttcgagaa gcccagtacc acctcggaat cttcgatgcg ttggttagca ctcaacccca 301 gagtgtagct taggctgatg agtctggaca tccctcaccg gtgacggtgt tccaggctgc 361 gttggcggcc tacctatggc taacgcatgg gacgctagtt gtgaacaagg tgtgaagagc 421 ctattgagct acataagaat cctccggccc ctgaatgcgg ctaatcccaa cctcggagca 481 ggtggttcac aaaccagtga ttggcctgtc gtaacgcgca agtccgtggc ggaaccgact 541 actttgggtg tccgtgtttc cttttatttt attgtggctg cttatggtga caatcacaga 601 ttgttatcat aaagcgaatt ggattggcca tccggtgaaa gtgagactca ttatctatct 661 gtttgctgga tccgctccat tgagtgtgtt tactctaagt acaatttcaa cagttatttc 721 aatcagacaa ttgtatcata atgggtgctc aggtttcatc acagaaagtg ggcgcacatg 781 aaaactcaaa tagagcgtat ggtggttcta ccattaatta caccaccatt aattattata 841 gagattcagc tagtaacgcg gcttcgaaac aggacttctc tcaagaccct tccaagttca 901 ccgagcccat caaggatgtc ctgataaaaa cagccccaat gctaaactcg ccaaacatag 961 aggcttgcgg gtatagcgat agagtactgc aattaacact gggaaactcc actataacca 1021 cacaggaggc ggctaattca gtagtcgctt atgggcgttg gcctgaatat ctgagggaca 1081 gcgaagccaa tccagtggac cagccgacag aaccagacgt cgctgcatgc aggttttata 1141 cgctagacac cgtgtcttgg acgaaagagt cgcgagggtg gtggtggaag ttgcctgatg 1201 cactgaggga catgggactc tttgggcaaa atatgtacta ccactaccta ggtaggtccg 1261 ggtacaccgt gcatgtacag tgtaacgcct ccaaattcca ccagggggca ctaggggtat 1321 tcgccgtacc agagatgtgt ctggccgggg atagcaacac cactaccatg cacaccagct 1381 atcaaaatgc caatcctggc gagaaaggag gcactttcac gggtacgttc actcctgaca 1441 acaaccagac atcacctgcc cgcagttctg cccggtggat tacctccttg gaaatggcac 1501 gttgttgggg aatgcctttg tgttccgcac agataataaa cttacggacc aacaactgtg 1561 ctacactggt actaccttac gtgaactccc tctcgctaga tagtatggta aagcacaata 1621 attggggaat tgcaatatta ccattggccc cattaaattt tgttagtgag tcctccccag 1681 agattccaat caccttgacc atagccccta tgtgctgtga gttcaatgga ttaagaaaca 1741 tcaccctgcc acgcttacag ggcctgccgg tcatgaacac ccctggtagc aatcaatatc 1801 ttactgcaga caacttccag tcaccgtgtg cgctgcctga atttgatgtg accccaccta 1861 ttgacatacc cggtgaagta aagaacatga tggaattggc agaaatcgac accatgattc 1921 cctttgactt aagtgccaca aaaaagaaca ccatggaaat gtatagggtt cggttaagtg 1981 acaaaccaca tacagccgcc tccatactct gcctgtcact ctctccagcc tcagatccta 2041 ggttgtcaca tactatgctt ggagaaatcc taaattacta cacacactgg gcaggatccc 2101 tgaagttcac gtttctgttc tgtggatcca tgatggcaac tggcaaactg ttggtgtcat 2161 acgcgcctcc tggagccgac ccaccaaaga agcgtaagga ggcgatgttg ggaacacatg 2221 tgatctggga cataggactg cagtcctcat gtactatggt agtgccatgg attagcaaca 2281 gcacgtatcg gcaaaccata gatgatagtt tcaccgaagg cggatacatc agcgtcttct 2341 accaaactag aatagtcgtc cctctttcga cacccagaga gatggacatc cttggttttg 2401 tgtcagcgtg taatgacttc agcgtgcgct tgttgcgaga taccacacat atagagcaaa 2461 aagcgctagc acaggggtta ggtcagatgc ttgaaagcat gattgacaac acagtccgtg 2521 aaacggtggg ggcggcaaca tctagagacg ctctcccaaa cactgaagcc agtggaccaa 2581 cacactccaa ggaaattccg gcactcaccg cagtggaaac tggggccaca aatccactag 2641 tcccttctga tacagtgcaa accagacatg ttgtacaaca taggtcaagg tcagagtcta 2701 gcatagagtc tttcttcgcg cggggtgcat gcgtgaccat tatgaccgtg gataacccag 2761 cttccaccac gaataaggat aagctatttg cagtgtggaa gatcacttat aaagatactg 2821 tccagttacg gaggaaattg gagttcttca cctattctag atttgatatg gaacttacct 2881 ttgtggttac tgcaaatttc actgagacta acaatgggca tgccttaaat caagtgtacc 2941 aaattatgta cgtaccacca ggcgctccag tgcccgaaaa atgggacgac tacacatggc 3001 aaacctcatc aaatccatca atcttttaca cctacgggac agctccagcc cggatctcgg 3061 taccgtatgt tggtatttcg aacgcctatt cacactttta cgacggtttt tccaaagtac 3121 cactgaagga ccagtcggca gcactaggtg actcccttta tggtgcagca tctctaaatg 3181 acttcggtat tttggctgtt agagtagtca atgatcacaa cccgaccaag gtcacctcca 3241 aaatcagagt gtatctaaaa cccaaacaca tcagagtctg gtgcccgcgt ccaccgaggc 3301 agctggcgta ctacggccct ggagtggatt acaaggatgg tacgcttaca cccctctcca 3361 ccaaggatct gaccacatat ggattcggac accaaaacaa agcggtgtac actgcaggtt 3421 acaaaatttg caactaccac ttggccactc aggatgattt gcaaaacgca gtgaacgtca 3481 tgtggagtag agacctctta gtcacagaat caagagccca gggcaccgat tcaatcgcaa 3541 ggtgcaattg caacgcaggg gtgtactact gcgagtctag aaggaaatac tacccagtat 3601 ccttcgttgg cccaacgttc cagtacatgg aggctaataa ctattaccca gttaggtacc 3661 agtcccatat gctcattggc catggattcg aatctccagg ggattgtggt ggcatactca 3721 gatgtcacca cggggtgata gggatcatta ctgctggtgg agaagggttg gttgcatttt 3781 cagacattag agacttgtat gcctacgaag aagaagccat ggaacaaggc atcaccaatt 3841 acatagagtc acttggggcc gcatttggaa gtggatttac tcagcagatt agcgacaaaa 3901 taacagagtt gaccaatatg gtgaccagta ccatcactga aaagctactt aagaacttga 3961 tcaagatcat atcctcacta gttattataa ctaggaacta tgaagacacc acaacagtgc 4021 tcgctaccct ggcccttctt gggtgtgatg cttcaccatg gcagtggctt agaaagaaag 4081 catgcgatgt tctggagata ccttatgtca tcaagcaagg tgacagttgg ttgaagaagt 4141 ttactgaagc atgccaacga gctaagggcc tggagtgggt gtcaaacaaa atctcaaaat 4201 tcattgattg gctcaaggag aaaattatcc cacaagctag agataagttg gaatttgtaa 4261 caaaacttag acaactagaa atgctggaaa accaaatctc aactatacac caatcatgcc 4321 ctagtcagga acaccaggaa attctattca ataatgtcag atggttatcc atccagtcta 4381 agaggtttgc ccctctttac gcagtggaag ccaaaagaat acagaaacta gagcatacta 4441 ttaacaacta catacagttc aagagcaaac accgtattga accagtatgt ttgctagtac 4501 atggcagccc cggaacaggt aaatctgtag caaccaacct gattgctaga gccatagctg 4561 aaagagaaaa cacgtccacg tactcgctac ccccggatcc atcacacttc gacggataca 4621 aacaacaggg agtggtgatt atggacgacc tgaatcaaaa cccagatggt gcggacatga 4681 agctgttctg tcagatggta tcaacagtgg agtttatacc acccatggca tccctggagg 4741 agaaaggaat cctgtttact tcaaattacg ttctagcatc cacaaactca agcagaattt 4801 ccccccccac tgtggcacac agtgatgcat tagccaggcg ctttgcgttc gacatggaca 4861 ttcaggtcat gaatgagtat tctagagatg ggaaattgaa catggccatg gctactgaaa 4921 tgtgtaagaa ctgtcaccaa ccagcaaact ttaagagatg ctgtccttta gtgtgtggta 4981 aggcaattca attaatggac aaatcttcca gagttagata cagtattgac cagatcacta 5041 caatgattat caatgagaga aacagaagat ccaacattgg caattgtatg gaggctttgt 5101 ttcaaggccc actccagtat aaagacttga aaattgacat caagacgagt ccccctcctg 5161 aatgtatcaa tgacttgctc caagcagttg actcccagga ggtgagagat tactgtgaga 5221 agaagggttg gatagtcaac atcaccagcc aggttcaaac agaaaggaac atcaacaggg 5281 caatgacaat tctacaagcg gtgacaacct tcgccgcagt ggctggagtt gtctatgtca 5341 tgtataaact gtttgctgga caccagggag catacactgg tttaccaaac aaaaaaccca 5401 acgtgcccac cattcggaca gcaaaggtac aaggaccagg gttcgattac gcagtggcta 5461 tggctaaaag aaacattgtt acagcaacta ctagcaaggg agagttcact atgttaggag 5521 tccacgacaa cgtggctatt ttaccaaccc acgcttcacc tggtgaaagc attgtgatcg 5581 atggcaaaga agcggagatc ttggatgcca aagtgtttga agatcaagca ggaaccaatt 5641 ttgaaatcac tataatcact ctaaagagaa atgaaaagtt cagagacatt agaccacata 5701 tacctactca aatcactgag acaaatgatg gagtcttgat cgtgaacact agcaagtacc 5761 ccaatatgta tgttcctgtc cgtgctgtga ctgaacaggg atatctaaat ctcggtgggc 5821 gccaaactgc tcgtactcta atgtacaact ttccaaccag agcaggacag tgtggtggag 5881 tcatcacatg tactgggaag tcatcgggat gcatgttggt ggacggttca cacgggtttg 5941 cagcggccct gaagcgatca ttattcactc agagtcaagg tgaaatcccg tggatgagac 6001 cttcgaagga cgcgggatat ccaatcataa atgccccgtc caaaaccaag cttgaaccca 6061 gtgctttcca ctatgtgttt gaaggggtga aggaaccagc agtcctcact aaaaacgatc 6121 ccaggcttaa gacagacttt gaggaggcaa ttttctccaa gtacgtgggt aacaaaatta 6181 ctgaagtgga tgagtacatg aaagaggcag tagaccacta tgctggccag ctcatgtcac 6241 tagacatcaa catagaacaa atgtgcttgg aggatgccat gtatggcact gatggtctag 6301 aagcacttga tttgtccacc agtgctggct acccttatgt agcaatggga aagaagaaga 6361 gagacatctt gaacaaacaa accagagaca ctaaggaaat gcaaaaactg ctcgacacat 6421 atggaatcaa cctcccactg gtgacttatg taaaggatga acttagatcc aaaacaaagg 6481 ttgagcaggg gaaatccaga ttaattgaag cttctagttt gaatgactca gtggcaatga 6541 gaatggcttt tgggaaccta tatgctgctt ttcacaaaaa cccaggagtg ataacaggtt 6601 cagcagtggg gtgcgatcca gatttgtttt ggagcaaaat tccggtattg atggaagaga 6661 agctgtttgc ttttgactac acagggtatg atgcatctct cagccctgct tggttcgagg 6721 cactaaagat ggtgcttgag aaaatcggat tcggagacag agttgactac atcgactacc 6781 taaaccactc acaccacctg tacaagaata aaacatactg tgtcaagggc ggtatgccat 6841 ctggctgctc aggcacttca atttttaact caatgattaa caacttgatt atcaggacac 6901 tcttactgaa aacctacaag ggcatagatt tagaccacct aaaaatgatt gcctatggtg 6961 atgatgtaat tgcttcctac ccccatgaag ttgacgctag tctcctagcc caatcaggaa 7021 aagactatgg actaactatg actccagctg acaaatcagc tacatttgaa acagtcacat 7081 gggagaatgt aacattcttg aagagattct tcagggcaga cgagaaatac ccatttctta 7141 ttcatccagt aatgccaatg aaggaaattc atgaatcaat tagatggact aaagatccta 7201 ggaacactca ggatcacgtt cgctctctgt gccttttagc ttggcacaat ggcgaagaag 7261 aatataacaa attcctagct aaaatcagga gtgtgccaat tggaagagct ttattgctcc 7321 cagagtactc aacattgtac cgccgttggc ttgactcatt ttagtaaccc tacctcagtc 7381 gaattggatt gggtcatact gctgtagggg taaatttttc tttaattcgg agg //