GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS MSCSCMVCA 1782 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Sugar cane mosaic virus RNA for capsid/nuclear inclusion protein
(3' terminal genome)
ACCESSION X05040
KEYWORDS capsid protein; coat protein; nuclear inclusion protein.
SOURCE Sugarcane mosaic virus RNA.
ORGANISM Sugarcane mosaic virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 1782)
AUTHORS Gough,K.H., Azad,A.A., Hanna,P.J. and Shukla,D.D.
TITLE Nucleotide sequence of the capsid and nuclear inclusion protein
genes from the Johnson grass strain of suragcane mosaic virus RNA
JOURNAL J. Gen. Virol. 68, 297-304 (1987)
STANDARD full automatic
COMMENT *source: strain=Johnson grass; clone=G7, E3;
Data kindly reviewed (20-OCT-1987) by GOUGH K.H.
From EMBL entry POSCMVCA; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS <1..1307
/note="capsid and nuclear inclusion protein (AA 436) (1 is
2nd base in codon)"
/codon_start=1
misc_feature 396..396
/note="put. N-term. of coat protein"
polyA_site 1782..1782
/note="polyA site"
BASE COUNT 579 a 356 c 440 g 407 t
ORIGIN
1 caaggaatag agaagatcta tggtttatgt cgcatcgagg catgttgaag gatggagttt
61 acataccgaa agtagaacca gagagggttg tcgccatttt ggaatgggat agaagcattg
121 agccagaaca ccgtctatca gcaatatgtg cagcgatcat cgaatcatgg ggctacgagg
181 aattaacata tcaaatccga cgattctacc aatgggtcct cgaacaagag ccatacaagg
241 aactagcact acaaggcaaa gctccatact tgtcagagac agctctacgg aaattatatc
301 ttgatgaatc ttgcgatcaa agtgaactac tacgttatta tgaagagatg tataagaacg
361 caatgatgag tgaagatgtg gtggatgtag aacatcagtc aggcaatgag gatgctggga
421 aacagaagag tgcaacaccc gctgcaaatc aaacagcaag tggggatggt aaaccagtac
481 aaacgacagc gacagcagat aacaagccgt cttcagataa cacgtcaaac gctcaaggaa
541 cttcacaaac caaaggaggt ggagaatcgg gtggaacgaa tgctacagca acaaagaagg
601 ataaggatgt tgacgttgga tcaactggaa cttttgttat cccgaaatta aagaaggttt
661 caccaaagat gcgtctaccc atggtgagca acaaagccat actcaatttg gaccatctaa
721 tccaatacaa accagatcag agagacattt caaatgcacg agctacacac acacaattcc
781 agttctggta caacagagtc aagaaagagt atgatgttga tgatgagcaa atgagaattt
841 tgatgaatgg gttgatggtt tggtgtatag agaatggcac atcccctgat ataaatggtt
901 attggaccat ggtggatggg aacaatcaat cagagtttcc actaaaacca atagtggaaa
961 acgcaaaacc aacattacga cagtgcatga tgcattttag tgatgccgca gaagcataca
1021 ttgaaatgag aaatttggat gagccgtaca tgccaagata cggtctcctt aggaatctaa
1081 atgacaagag cctcgctcga tacgcatttg atttctatga gatcaattcg cgcacaccaa
1141 atagggcgag agaggcacat gcacaaatga aggcagcagc aattagaggg tccacgaacc
1201 acatgtttgg actcgacggg aatgttggag agagctctga gaacacagag cggcacacag
1261 ctgcagatgt ctcacggaat gttcattcgt accgtggggc caaaatctaa ggaggaggaa
1321 caaccgtcta tctgacgtta aaggatgact ggccaagtct gaaaattggc gagataccag
1381 ttccgaatag tccgtacaga actagaggtg aacagagagc actataaacg tttagtaggg
1441 atcgagggat gacacgtagg acctcaatga ccatgcttag cgctagcatt gtgtgaagct
1501 ctaacactca ggtgttatct tccgggctgt ggtaatctcg taccccgaag tacctatggg
1561 ccctcagcac cagacagtac tgggactatg gatcttttct tggcaatcac tagtattata
1621 aatcgttctg caacggcacg agtggtgttt tacacctggg tgggattcta atgctgttat
1681 acagttatgg ataacggccc gtgttgttcg tatttactag ttgcatcaaa ccatctgagc
1741 ctcagagtga gcttctcacc acgtagtctc ttatggcgag at
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