GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS PVYYNXX 9704 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Potatovirus Y strain N genomic RNA
ACCESSION X12456
KEYWORDS RNA dependent RNA polymerase; RNA polymerase;
aphid transmission factor; capsid protein; genome; polyprotein;
protease.
SOURCE Potato virus Y RNA.
ORGANISM Potato virus Y
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 9704)
AUTHORS Robaglia,C.
JOURNAL Unpublished (1988)
STANDARD full automatic
REFERENCE 2 (bases 1 to 9704)
AUTHORS Robaglia,C., Durand-Tardif,M., Tronchet,M., Boudazin,G.,
Astier-Manifacier,S. and Casse-Delbart,F.
TITLE Nucleotide sequence of potato virus (N strain) genomic RNA.
JOURNAL J. Gen. Virol. 70, 935-947 (1989)
STANDARD full automatic
COMMENT *source: strain=N;
From EMBL entry PVYNXX; dated 09-AUG-1990.
FEATURES Location/Qualifiers
CDS 185..9373
/note="virus polyprotein (AA 1 - 3063)"
/codon_start=185
CDS 185..1009
/note="put. 31 kD protein (AA 1 - 275; 275 AA)"
/codon_start=185
CDS 1010..2656
/note="aphid transmission factor (AA 276 - 824; 549 AA)"
/codon_start=1010
CDS 2657..3655
/note="put. 38 kD protein (AA 825 - 1157; 333 AA)"
/codon_start=2657
CDS 3656..5557
/note="cytoplasmic inclusion (AA 1158 - 1791; 634 AA)"
/codon_start=3656
CDS 5558..5713
/note="put. VPg (AA 1792 - 1843; 52 AA)"
/codon_start=5558
CDS 5714..7009
/note="protease (AA 1844 - 2275; 432 AA)"
/codon_start=5714
CDS 7010..8572
/note="put. RNA dependent RNA polymerase (AA 2276 - 2796;
521 AA)"
/codon_start=7010
CDS 8573..9373
/note="capsid protein (AA 2797 - 3063; 267 AA)"
/codon_start=8573
polyA_site 9704..9704
/note="polyA site"
BASE COUNT 3004 a 1818 c 2272 g 2610 t
ORIGIN
1 aattaaaaca actcaataca acataagaaa aacaacgcaa aaacactcat aaacgctcat
61 tctcactcaa gcaacttgct aagtttcagt ttaaatcatt tccttgcaat tctctagaac
121 aatattggaa accatttcaa ctcaacaagc aatttcatca cttccaacca atttcagatc
181 ctcaatggca acttacatgt caacaatctg ttttggttcg tttgaatgca agctaccata
241 ctcaccagcc tcttgcgagc atattgtgaa ggaacgagaa gtgccggctt ccgttgatcc
301 tttcgcagat ctggaaacac aacttagtgc acgattgctc aagcaaaaat atgctactgt
361 tcgtgtgctc aaaaacggta cttttacgta ccgatacaag actgatgccc agataatgcg
421 cattcagaag aaactggaga ggaaggatag ggaagaatat cacttccaaa tggccgctcc
481 tagtattgtg tcaaaaatta ctatagctgg cggagatcct ccatcaaagt ctgagccaca
541 agcaccaaga gggatcattc atacaactcc aaggatgcgt aaagtcaaga cacgccccat
601 aataaagttg acagaaggcc agatgaatca cctcattaag cagataaaac agattatgtc
661 ggagaaaaga gggtctgtcc acttaattag taagaaaacc actcatgttc aatataagaa
721 gatacttggt gcatactccg cagcggttcg aactgcacat atgatgggtt tgcgacggag
781 agtggacttc cgatgtgata tgtggacagt tggacttttg caacgtctcg ctcggacgga
841 caaatggtcc aatcaagtcc gcactatcaa catacgaagg ggtgatagtg gagtcatctt
901 gaacacaaaa agcctcaaag gccactttgg tagaagttca ggaggcttgt tcatagtgcg
961 tggatcacac gaagggaaat tgtatgatgc acgttctaga gttactcaga gtattttaaa
1021 ctcaatgatc cagttttcga atgccgacaa tttttggaag ggtctggacg gtaattgggc
1081 acgaatgaga tatccttcgg atcacacatg tgtagctggt ttacctgtcg aagattgtgg
1141 tagggtagct gcattgatgg cacacagtat ccttccgtgc tataagataa cttgccccac
1201 ctgtgctcaa cagtatgcca gcttgccagt tagcgatctg tttaagctat tgcataaaca
1261 tgcaagagat ggtttgaatc gattgggagc ggataaagac cggtttatac atgttaataa
1321 gttcttgata gcgttagagc atctaactga accggtggac ctgaatctcg agcttttcaa
1381 tgagatattt aaatccatag gggagaaaca gcaagcaccg ttcaagaatt taaatgtctt
1441 aaataatttc ttcctgaaag gaaaagaaaa tacagctcat gaatggcagg tagctcaatt
1501 gagtttgctc gaattagcaa ggttccagaa gaacagaact gataacatca agaaaggtga
1561 tatatctttc ttcagaaata aattatctgc caaggcaaac tggaatctgt atttgtcgtg
1621 cgacaaccag ctggataaaa atgcaaactt cctctgggga caaagggagt atcatgctaa
1681 gcggtttttc tcaaacttct ttgaggaaat tgatccagca aagggatact cagcatatga
1741 aatccgcaag catccaagtg gaacaaggaa gctctcaatt ggtaacttag ttgtcccact
1801 tgatttagct gagtttaggc agaagatgaa aggtgactat aggaaacaac caggggtcag
1861 caaaaagtgc acgagttcga aagatggtaa ttatgtgtat ccctgttgtt gcacaacact
1921 tgatgatggt tcagccattg aatcaacatt ctatccacca actaaaaagc accttgtaat
1981 tggcaatagt ggtgaccaaa aatttgttga tttaccaaaa ggggattcgg agatgttata
2041 cattgccaag cagggttatt gttatattaa cgtgtttctt gcaatgctga ttaacattag
2101 cgaggaggat gcaaaggatt tcacaaagaa agttcgcgac atgtgtgtgc caaagcttgg
2161 aacctggcca actatgatgg atttggcgac cacttgtgct caaatgagaa tattctatcc
2221 tgacgtacat gatgcagaat tgcccagaat attggttgac catgacactc aaacgtgtca
2281 tgtggttgac tcatttggct cgcagacaac tggatatcat attctaaaag catccagcgt
2341 gtctcaactt atcttgtttg caaatgatga attagaatct gatataaaac attatagagt
2401 tggtggtgtt cctaatgcta gccctgaact tgggtccaca atatcacctt tcagagaagg
2461 aggagttata atgtctgagt cggcagcgct gaaactgctt ttgaagggaa tttttagacc
2521 taaggtgatg agacagttgc tgttagatga gccttacctg ttgattctat caatactatc
2581 ccctggcata ctgatggcta tgtataataa tgggattttt gaacttgcgg tgaggttgtg
2641 gattaatgag aaacaatcca tagctatgat agcatcgcta ctatcagctt tagccctacg
2701 agtgtcagcg gcagaaacac tcgtcgcaca gaggattata attgatgctg cagctacaga
2761 cctccttgat gctacgtgtg atgggttcaa cctacatcta acgtacccca ctgcattgat
2821 ggtgttgcaa gttgttaaga atagaaatga atgtgatgat accctattca aggcgggttt
2881 tccaagttac aacacgagcg tcgtacagat tatggaaaaa aattatctaa atctcttgaa
2941 cgatgcttgg aaagatttaa cttggcgaga aaattatccg caacatggta ctcatacaga
3001 gcaaaacgct ctatccactc ggtacataaa acccacagaa aaggcagatt tgaaagggtt
3061 atacaacata tcaccacaag cgttcttggg ccgaagcgcc caggtggtca aaggcactgc
3121 ctcaggattg agcgagcgat ttaataatta tttcaatact aagtgtgtaa atatttcatc
3181 ctttttcatt cgtagaatct ttaggcgttt gccaaccttt gtcacttttg ttaactcatt
3241 attagttatt agtatgttaa ccagcgtagt ggcagtgtgt caggcaataa ttttagatca
3301 gaggaagtat aggagagaaa tcgagttgat gcagatagag aagaatgaga ttgtctgcat
3361 ggagctatat gcaagtttac agcgcaaact tgaacgcgat ttcacatggg atgagtacat
3421 tgagtatttg aagtcagtaa accctcagat agttcagttt gctcaagcgc agatggaaga
3481 atatgatgtg cgacaccagc gttccacacc agttgttaaa aatttggaac aagtggtagc
3541 atttatggct ttagtcatca tggtgtttga tgctgaaagg agtgattgcg tgttcaaaac
3601 tctcaataaa tttaagggtg tcctttcctc actggattat gaagttagac atcagtcctt
3661 agacgatgtg atcaagaatt ttgatgagag gaatgagatt attgattttg aattgagtga
3721 ggacacaatt cgaacttcat cagtgctaga tacaaagttt agtgattggt gggatcgaca
3781 aatccagatg ggacatacac ttccacatta cagaactgag gggcacttca tggaatttac
3841 aagagcaact gctgttcaag tggctaatga cattgcccat agcgaacacc tagacttttt
3901 agtacgggga gctgttgggt ctggaaagtc aactgggttg cctgttcatc ttagtgtggc
3961 cggatctgtg cttttaattg aaccaacgcg accactagcg gagaacgttt tcaaacagct
4021 atctagtgaa ccattcttca agaagccaac actgcgtatg cgtggaaata gtatatttgg
4081 ctcttctcca atctccgtca tgactagcgg atttgcgcta cactacttcg ccaataatcg
4141 ctctcaatta gctcagttca actttgtaat atttgatgag tgtcatgttc tggatccttc
4201 cgcgatggcg ttccgcagtc tgctgagtgt ttatcatcaa gcatgcaaag tattaaaagt
4261 gtcagctact ccagtgggaa gagaggttga attcacaaca cagcagccag tcaagttaat
4321 agtggaggac acactgtctt tccaatcatt tgttgatgca caaggttcta aaactaatgc
4381 tgatgttgtt cagtttggtt caaacgtact tgtgtacgtg tcgagctaca atgaagttga
4441 caccttggcc aagctcctaa cagacaagaa tatgatggtc acaaaggttg atggcagaac
4501 aatgaagcac ggttgcctag aaattgtcac aaaaggaacc agtgcgagac cacattttgt
4561 tgtagcaacc aacataattg agaatggagt gactttggac atagacgtgg ttgtggactt
4621 tgggttgaaa gtctcaccgt tcttggacat tgacaatagg agcattgctt acaataaggt
4681 gagtgttagc tatggtgaga gaattcaaag gctgggtcgt gttggacgct tcaagaaagg
4741 agtagcattg cgcattggac acactgaaaa gggaattatt gaaattccaa gcatggtcgc
4801 tactgaggcg gctcttgctt gctttgcata taacttgcca gtgatgacag gaggcgtttc
4861 aactagtctg attggcaatt gtactgtgcg ccaggttaaa acaatgcagc aatttgaatt
4921 gagtcccttc tttatccaga atttcgttgc tcatgatgga tcaatgcatc ctgtcataca
4981 tgacattctt aaaaagtata aacttcgaga ttgtatgacg cctttgtgcg atcagtctat
5041 accatacagg gcatcgagta cttggttatc ggttagtgaa tatgagcgac ttggagtggc
5101 cttagaaatt ccaaagcaag tcaaaattgc attccatatc aaagagatcc ctcctaagct
5161 ccacgaaatg ctttgggaaa cggttgtcaa gtacaaagac gtttgcttat ttccaagcat
5221 tcgagcatcg tccatcagca aaatcgcata cacattgcgt acagatctct tcgccatccc
5281 aagaactcta atattggtgg agagattgct tgaagaggag cgagtgaagc agagccaatt
5341 cagaagtctc atcgatgaag ggtgctcaag catgttttca attgttaact taaccaacac
5401 tctcagagct agatatgcaa aagattacac cgcagagaac atacaaaaac ttgagaaggt
5461 gagaagtcaa ctaaaagaat tctcaaattt ggatggttct gcatgtgagg agaatttaat
5521 aaagaggtat gagtcgttgc agttcgttca tcaccaagct gcgacgtcac ttgcaaagga
5581 tctcaagttg aaggggattt ggaacaagtc attagtggct aaagacttga tcatagcagg
5641 cgctgttgca attggtggaa taggactcat atatagttgg ttcacacaat cagttgagac
5701 tgtgtctcat caagggaaaa ataaatccaa aagaatccaa gccttgaagt ttcgccatgc
5761 tcgtgacaaa agggctggct ttgaaattga caacaatgat gacacaatag aggaattctt
5821 cggatctgca tacaggaaaa agggaaaagg taaaggtacc acagttggta tgggtaagtc
5881 aagcaggagg ttcatcaaca tgtatgggtt tgatccaaca gagtactcat tcatccaatt
5941 cgttgatcca ctcactgggc ggcaaataga agaaaatgtc tatgctgaca ttagagatat
6001 tcaagagaga tttagtgaag tgcgaaagaa aatggttgag aatgatgaca ttgaaatgca
6061 agccttgggt agtaacacga ccatacatgc atacttcagg aaagattggt gtgataaagc
6121 tttgaagatt gatttaatgc cacataaccc actcaaagtt tgtgacaaaa caaatggcat
6181 tgccaaattt cctgagagag agctcgaact aaggcagact gggccagctg tagaagtcga
6241 tgtgaaggac ataccagcac aggaggtgga gcatgaagct aaatcgctca tgagaggctt
6301 gagagacttc aacccaattg cccaaacagt ttgtaggctg aaagtatctg ttgaatatgg
6361 ggcatcagag atgtacggtt ttggatttgg agcatacata gtagcgaacc accatttatt
6421 taggagttac aatggttcca tggaggtgca atccatgcac ggtacattca gggtgaagaa
6481 tctacacagt ttgagcgttc tgccaattaa aggtagggac atcatcctca tcaaaatgcc
6541 gaaagatttc cctgtctttc cacagaaatt gcatttccga gctcctacac agaatgaaag
6601 aatttgttta gttggaacca acttccaaga gaagtatgct tcgtcgatca tcacagaaac
6661 aagcactact tacaatatac caggcagcac attctggaag cattggattg aaacagataa
6721 tggacattgt ggactaccag tggtgagcac cgccgatgga tgtatagtcg gaattcacag
6781 tctggcaaac aatgcacaca ccacgaacta ctactcagcc ttcgatgaag attttgaaag
6841 caagtacctc cgaaccaatg agcacaatga atgggtcaag tcttgggttt ataatccaga
6901 cacagtgttg tggggcccgt tgaaacttaa agacagcact cccaaagggt tattcaaaac
6961 aacaaagctt gtgcaagatc taatcgatca tgatgtagtg gtggagcaag ctaagcattc
7021 tgcatggatg tttgaagcct tgacaggaaa tttgcaagct gtcgcaacaa tgaagagcca
7081 attagtaacc aagcatgtag ttaaaggaga gtgtcgacac ttcacagaat ttctgactgt
7141 ggatgcagag gcagaggcag aggcattctt caggcctttg atggatgcgt atgggaaaag
7201 cttgctaaat agagatgcgt acatcaagga cataatgaag tattcaaaac ctatagatgt
7261 tggtgtcgtg gatcggatgc atttgaggaa gccatcaata gggttatcat ctacctgcaa
7321 tgtgcacggc ttcaagaagt gtgcatatgt cactgatgag caagaaattt tcaaagcgct
7381 caacatgaaa gctgcagtcg gagccagtta tgggtgcaaa aagaaagact attttgagca
7441 tttcactgat gcagataagg aagaaatagt catgcaaagc tgtctgcgat tgtataaagg
7501 tttgcttggc atttggaacg gatcattgaa ggcagagctc cggtgtaagg agaagatact
7561 tgcaaataag acgaggacgt tcactgctgc acctctagac actttgctgg gtggtaaagt
7621 gtgtgttgat gacttcaata atcaatttta ttcaaagaat attgaatgct gttggacagt
7681 tgggatgact aagttttatg gtggttggga taaactgctt cggcgtttac ctgagaattg
7741 ggtatactgt gatgctgatg gctcacagtt tgatagttca ctaactccat acctaatcaa
7801 tgctgttctc accatcagaa gcacatacat ggaagactgg gatgtggggt tgcagatgct
7861 gcgcaattta tacactgaga ttgtttacac accaatttca actccagatg gaacaattgt
7921 caagaagttt agaggtaata atagtggtca accttctacc gttgtggata attctctcat
7981 ggttgtcctt gctatgcatt acgctctcat taaggagtgc gttgagtttg aagaaatcga
8041 cagcacgtgt gtattctttg ttaatggtga tgacttattg attgctgtga atccggagaa
8101 agagagcatt ctcgatagaa tgtcacaaca tttctcagat cttggtttga actatgattt
8161 ttcgtcgaga acaagaagga aggaggaatt gtggttcatg tcccatagag gcctgctaat
8221 cgagggtatg tacgtgccaa agcttgaaga agagagaatt gtatccattc tgcaatggga
8281 tagagctgat ctgccagagc acagattaga agcgatttgc gcagctatga tagagtcctg
8341 gggttattct gaactaacac accaaatcag gagattctac tcatggttat tgcaacagca
8401 accttttgca acaatagcgc aggaagggaa ggctccttat atagcaagca tggcactaag
8461 gaaactgtat atggataggg ctgtggatga ggaagagcta agagccttca ctgaaatgat
8521 ggtcgcatta gatgatgagt ttgagcttga ctcttatgaa gtacaccatc aagcaaatga
8581 cacaattgat gcaggaggaa gcaacaagaa agatgcaaaa ccagagcagg gcagcatcca
8641 gccaaacccg aacaaaggaa aggataagga tgttaatgca ggcacatctg ggacacatac
8701 tgtgccgaga atcaaggcta tcacgtccaa aatgagaatg cccacaagca agggagcaac
8761 cgtgctaaac ttagaacatt tgcttgagta tgctccacaa caaattgata tttcaaatac
8821 tcgggcaact caatcacagt ttgatacgtg gtatgaggca gtgcggatgg catacgacat
8881 aggagaaact gagatgccaa ctgtgatgaa tgggcttatg gtttggtgca ttgaaaatgg
8941 aacctcgcca aatgtcaacg gagtttgggt tatgatggat gggaatgaac aagttgagta
9001 cccgttgaaa ccaatcgttg agaatgcaaa accaaccctt aggcaaatca tggcacattt
9061 ctcagatgtt gcagaagcgt atatagaaat gcgcaacaaa aaggaaccat atatgccacg
9121 atatggttta attcgaaatc tgcgggatat gggtttagcg cgttatgcct ttgactttta
9181 tgaggtcaca tcacgaacac cagtgagggc tagggaagcg cacattcaaa tgaaggccgc
9241 agcattgaaa tcagcccaac ctcgactttt cgggttggac ggtggcatca gtacacaaga
9301 ggagaacaca gagaggcaca ccaccgagga tgtctctcca agtatgcata ctctacttgg
9361 agtcaagaac atgtgatgta gtgtctctcc ggacgatata taagtattta catatgcagt
9421 aagtattttg gcttttcctg tactactttt atcataatta ataatcgttt gaatattact
9481 ggcagatagg ggtggtatag cgattccgtc gttgttagtg accttagctg tcggttctgt
9541 attattaagt cttagataaa aagtgccggg ttgttgttgt gtgactgatc tatcgattag
9601 gtgatgctgt gattctgtca tagcagtgac tatgtctgga tttagttact tgggtgatgc
9661 tgtgattctg tcatagcagt gactgtaaac ttcaatcagg agac
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