[bionet.molbio.genbank.updates] Potatovirus Y strain N genomic RNA

GenBank-Updates@genbank.bio.net (05/29/91)

LOCUS       PVYYNXX      9704 bp ss-mRNA            VRL       28-MAY-1991
DEFINITION  Potatovirus Y strain N genomic RNA
ACCESSION   X12456
KEYWORDS    RNA dependent RNA polymerase; RNA polymerase;
            aphid transmission factor; capsid protein; genome; polyprotein;
            protease.
SOURCE      Potato virus Y RNA.
  ORGANISM  Potato virus Y
            Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
            Potyvirus.
REFERENCE   1  (bases 1 to 9704)
  AUTHORS   Robaglia,C.
  JOURNAL   Unpublished (1988)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 9704)
  AUTHORS   Robaglia,C., Durand-Tardif,M., Tronchet,M., Boudazin,G.,
            Astier-Manifacier,S. and Casse-Delbart,F.
  TITLE     Nucleotide sequence of potato virus (N strain) genomic RNA.
  JOURNAL   J. Gen. Virol. 70, 935-947 (1989)
  STANDARD  full automatic
COMMENT     *source: strain=N;
            
            From EMBL    entry PVYNXX;  dated 09-AUG-1990.
FEATURES             Location/Qualifiers
     CDS             185..9373
                     /note="virus polyprotein (AA 1 - 3063)"
                     /codon_start=185
     CDS             185..1009
                     /note="put. 31 kD protein (AA 1 - 275; 275 AA)"
                     /codon_start=185
     CDS             1010..2656
                     /note="aphid transmission factor (AA 276 - 824; 549 AA)"
                     /codon_start=1010
     CDS             2657..3655
                     /note="put. 38 kD protein (AA 825 - 1157; 333 AA)"
                     /codon_start=2657
     CDS             3656..5557
                     /note="cytoplasmic inclusion (AA 1158 - 1791; 634 AA)"
                     /codon_start=3656
     CDS             5558..5713
                     /note="put. VPg (AA 1792 - 1843; 52 AA)"
                     /codon_start=5558
     CDS             5714..7009
                     /note="protease (AA 1844 - 2275; 432 AA)"
                     /codon_start=5714
     CDS             7010..8572
                     /note="put. RNA dependent RNA polymerase (AA 2276 - 2796;
                     521 AA)"
                     /codon_start=7010
     CDS             8573..9373
                     /note="capsid protein (AA 2797 - 3063; 267 AA)"
                     /codon_start=8573
     polyA_site      9704..9704
                     /note="polyA site"
BASE COUNT     3004 a   1818 c   2272 g   2610 t
ORIGIN
        1 aattaaaaca actcaataca acataagaaa aacaacgcaa aaacactcat aaacgctcat
       61 tctcactcaa gcaacttgct aagtttcagt ttaaatcatt tccttgcaat tctctagaac
      121 aatattggaa accatttcaa ctcaacaagc aatttcatca cttccaacca atttcagatc
      181 ctcaatggca acttacatgt caacaatctg ttttggttcg tttgaatgca agctaccata
      241 ctcaccagcc tcttgcgagc atattgtgaa ggaacgagaa gtgccggctt ccgttgatcc
      301 tttcgcagat ctggaaacac aacttagtgc acgattgctc aagcaaaaat atgctactgt
      361 tcgtgtgctc aaaaacggta cttttacgta ccgatacaag actgatgccc agataatgcg
      421 cattcagaag aaactggaga ggaaggatag ggaagaatat cacttccaaa tggccgctcc
      481 tagtattgtg tcaaaaatta ctatagctgg cggagatcct ccatcaaagt ctgagccaca
      541 agcaccaaga gggatcattc atacaactcc aaggatgcgt aaagtcaaga cacgccccat
      601 aataaagttg acagaaggcc agatgaatca cctcattaag cagataaaac agattatgtc
      661 ggagaaaaga gggtctgtcc acttaattag taagaaaacc actcatgttc aatataagaa
      721 gatacttggt gcatactccg cagcggttcg aactgcacat atgatgggtt tgcgacggag
      781 agtggacttc cgatgtgata tgtggacagt tggacttttg caacgtctcg ctcggacgga
      841 caaatggtcc aatcaagtcc gcactatcaa catacgaagg ggtgatagtg gagtcatctt
      901 gaacacaaaa agcctcaaag gccactttgg tagaagttca ggaggcttgt tcatagtgcg
      961 tggatcacac gaagggaaat tgtatgatgc acgttctaga gttactcaga gtattttaaa
     1021 ctcaatgatc cagttttcga atgccgacaa tttttggaag ggtctggacg gtaattgggc
     1081 acgaatgaga tatccttcgg atcacacatg tgtagctggt ttacctgtcg aagattgtgg
     1141 tagggtagct gcattgatgg cacacagtat ccttccgtgc tataagataa cttgccccac
     1201 ctgtgctcaa cagtatgcca gcttgccagt tagcgatctg tttaagctat tgcataaaca
     1261 tgcaagagat ggtttgaatc gattgggagc ggataaagac cggtttatac atgttaataa
     1321 gttcttgata gcgttagagc atctaactga accggtggac ctgaatctcg agcttttcaa
     1381 tgagatattt aaatccatag gggagaaaca gcaagcaccg ttcaagaatt taaatgtctt
     1441 aaataatttc ttcctgaaag gaaaagaaaa tacagctcat gaatggcagg tagctcaatt
     1501 gagtttgctc gaattagcaa ggttccagaa gaacagaact gataacatca agaaaggtga
     1561 tatatctttc ttcagaaata aattatctgc caaggcaaac tggaatctgt atttgtcgtg
     1621 cgacaaccag ctggataaaa atgcaaactt cctctgggga caaagggagt atcatgctaa
     1681 gcggtttttc tcaaacttct ttgaggaaat tgatccagca aagggatact cagcatatga
     1741 aatccgcaag catccaagtg gaacaaggaa gctctcaatt ggtaacttag ttgtcccact
     1801 tgatttagct gagtttaggc agaagatgaa aggtgactat aggaaacaac caggggtcag
     1861 caaaaagtgc acgagttcga aagatggtaa ttatgtgtat ccctgttgtt gcacaacact
     1921 tgatgatggt tcagccattg aatcaacatt ctatccacca actaaaaagc accttgtaat
     1981 tggcaatagt ggtgaccaaa aatttgttga tttaccaaaa ggggattcgg agatgttata
     2041 cattgccaag cagggttatt gttatattaa cgtgtttctt gcaatgctga ttaacattag
     2101 cgaggaggat gcaaaggatt tcacaaagaa agttcgcgac atgtgtgtgc caaagcttgg
     2161 aacctggcca actatgatgg atttggcgac cacttgtgct caaatgagaa tattctatcc
     2221 tgacgtacat gatgcagaat tgcccagaat attggttgac catgacactc aaacgtgtca
     2281 tgtggttgac tcatttggct cgcagacaac tggatatcat attctaaaag catccagcgt
     2341 gtctcaactt atcttgtttg caaatgatga attagaatct gatataaaac attatagagt
     2401 tggtggtgtt cctaatgcta gccctgaact tgggtccaca atatcacctt tcagagaagg
     2461 aggagttata atgtctgagt cggcagcgct gaaactgctt ttgaagggaa tttttagacc
     2521 taaggtgatg agacagttgc tgttagatga gccttacctg ttgattctat caatactatc
     2581 ccctggcata ctgatggcta tgtataataa tgggattttt gaacttgcgg tgaggttgtg
     2641 gattaatgag aaacaatcca tagctatgat agcatcgcta ctatcagctt tagccctacg
     2701 agtgtcagcg gcagaaacac tcgtcgcaca gaggattata attgatgctg cagctacaga
     2761 cctccttgat gctacgtgtg atgggttcaa cctacatcta acgtacccca ctgcattgat
     2821 ggtgttgcaa gttgttaaga atagaaatga atgtgatgat accctattca aggcgggttt
     2881 tccaagttac aacacgagcg tcgtacagat tatggaaaaa aattatctaa atctcttgaa
     2941 cgatgcttgg aaagatttaa cttggcgaga aaattatccg caacatggta ctcatacaga
     3001 gcaaaacgct ctatccactc ggtacataaa acccacagaa aaggcagatt tgaaagggtt
     3061 atacaacata tcaccacaag cgttcttggg ccgaagcgcc caggtggtca aaggcactgc
     3121 ctcaggattg agcgagcgat ttaataatta tttcaatact aagtgtgtaa atatttcatc
     3181 ctttttcatt cgtagaatct ttaggcgttt gccaaccttt gtcacttttg ttaactcatt
     3241 attagttatt agtatgttaa ccagcgtagt ggcagtgtgt caggcaataa ttttagatca
     3301 gaggaagtat aggagagaaa tcgagttgat gcagatagag aagaatgaga ttgtctgcat
     3361 ggagctatat gcaagtttac agcgcaaact tgaacgcgat ttcacatggg atgagtacat
     3421 tgagtatttg aagtcagtaa accctcagat agttcagttt gctcaagcgc agatggaaga
     3481 atatgatgtg cgacaccagc gttccacacc agttgttaaa aatttggaac aagtggtagc
     3541 atttatggct ttagtcatca tggtgtttga tgctgaaagg agtgattgcg tgttcaaaac
     3601 tctcaataaa tttaagggtg tcctttcctc actggattat gaagttagac atcagtcctt
     3661 agacgatgtg atcaagaatt ttgatgagag gaatgagatt attgattttg aattgagtga
     3721 ggacacaatt cgaacttcat cagtgctaga tacaaagttt agtgattggt gggatcgaca
     3781 aatccagatg ggacatacac ttccacatta cagaactgag gggcacttca tggaatttac
     3841 aagagcaact gctgttcaag tggctaatga cattgcccat agcgaacacc tagacttttt
     3901 agtacgggga gctgttgggt ctggaaagtc aactgggttg cctgttcatc ttagtgtggc
     3961 cggatctgtg cttttaattg aaccaacgcg accactagcg gagaacgttt tcaaacagct
     4021 atctagtgaa ccattcttca agaagccaac actgcgtatg cgtggaaata gtatatttgg
     4081 ctcttctcca atctccgtca tgactagcgg atttgcgcta cactacttcg ccaataatcg
     4141 ctctcaatta gctcagttca actttgtaat atttgatgag tgtcatgttc tggatccttc
     4201 cgcgatggcg ttccgcagtc tgctgagtgt ttatcatcaa gcatgcaaag tattaaaagt
     4261 gtcagctact ccagtgggaa gagaggttga attcacaaca cagcagccag tcaagttaat
     4321 agtggaggac acactgtctt tccaatcatt tgttgatgca caaggttcta aaactaatgc
     4381 tgatgttgtt cagtttggtt caaacgtact tgtgtacgtg tcgagctaca atgaagttga
     4441 caccttggcc aagctcctaa cagacaagaa tatgatggtc acaaaggttg atggcagaac
     4501 aatgaagcac ggttgcctag aaattgtcac aaaaggaacc agtgcgagac cacattttgt
     4561 tgtagcaacc aacataattg agaatggagt gactttggac atagacgtgg ttgtggactt
     4621 tgggttgaaa gtctcaccgt tcttggacat tgacaatagg agcattgctt acaataaggt
     4681 gagtgttagc tatggtgaga gaattcaaag gctgggtcgt gttggacgct tcaagaaagg
     4741 agtagcattg cgcattggac acactgaaaa gggaattatt gaaattccaa gcatggtcgc
     4801 tactgaggcg gctcttgctt gctttgcata taacttgcca gtgatgacag gaggcgtttc
     4861 aactagtctg attggcaatt gtactgtgcg ccaggttaaa acaatgcagc aatttgaatt
     4921 gagtcccttc tttatccaga atttcgttgc tcatgatgga tcaatgcatc ctgtcataca
     4981 tgacattctt aaaaagtata aacttcgaga ttgtatgacg cctttgtgcg atcagtctat
     5041 accatacagg gcatcgagta cttggttatc ggttagtgaa tatgagcgac ttggagtggc
     5101 cttagaaatt ccaaagcaag tcaaaattgc attccatatc aaagagatcc ctcctaagct
     5161 ccacgaaatg ctttgggaaa cggttgtcaa gtacaaagac gtttgcttat ttccaagcat
     5221 tcgagcatcg tccatcagca aaatcgcata cacattgcgt acagatctct tcgccatccc
     5281 aagaactcta atattggtgg agagattgct tgaagaggag cgagtgaagc agagccaatt
     5341 cagaagtctc atcgatgaag ggtgctcaag catgttttca attgttaact taaccaacac
     5401 tctcagagct agatatgcaa aagattacac cgcagagaac atacaaaaac ttgagaaggt
     5461 gagaagtcaa ctaaaagaat tctcaaattt ggatggttct gcatgtgagg agaatttaat
     5521 aaagaggtat gagtcgttgc agttcgttca tcaccaagct gcgacgtcac ttgcaaagga
     5581 tctcaagttg aaggggattt ggaacaagtc attagtggct aaagacttga tcatagcagg
     5641 cgctgttgca attggtggaa taggactcat atatagttgg ttcacacaat cagttgagac
     5701 tgtgtctcat caagggaaaa ataaatccaa aagaatccaa gccttgaagt ttcgccatgc
     5761 tcgtgacaaa agggctggct ttgaaattga caacaatgat gacacaatag aggaattctt
     5821 cggatctgca tacaggaaaa agggaaaagg taaaggtacc acagttggta tgggtaagtc
     5881 aagcaggagg ttcatcaaca tgtatgggtt tgatccaaca gagtactcat tcatccaatt
     5941 cgttgatcca ctcactgggc ggcaaataga agaaaatgtc tatgctgaca ttagagatat
     6001 tcaagagaga tttagtgaag tgcgaaagaa aatggttgag aatgatgaca ttgaaatgca
     6061 agccttgggt agtaacacga ccatacatgc atacttcagg aaagattggt gtgataaagc
     6121 tttgaagatt gatttaatgc cacataaccc actcaaagtt tgtgacaaaa caaatggcat
     6181 tgccaaattt cctgagagag agctcgaact aaggcagact gggccagctg tagaagtcga
     6241 tgtgaaggac ataccagcac aggaggtgga gcatgaagct aaatcgctca tgagaggctt
     6301 gagagacttc aacccaattg cccaaacagt ttgtaggctg aaagtatctg ttgaatatgg
     6361 ggcatcagag atgtacggtt ttggatttgg agcatacata gtagcgaacc accatttatt
     6421 taggagttac aatggttcca tggaggtgca atccatgcac ggtacattca gggtgaagaa
     6481 tctacacagt ttgagcgttc tgccaattaa aggtagggac atcatcctca tcaaaatgcc
     6541 gaaagatttc cctgtctttc cacagaaatt gcatttccga gctcctacac agaatgaaag
     6601 aatttgttta gttggaacca acttccaaga gaagtatgct tcgtcgatca tcacagaaac
     6661 aagcactact tacaatatac caggcagcac attctggaag cattggattg aaacagataa
     6721 tggacattgt ggactaccag tggtgagcac cgccgatgga tgtatagtcg gaattcacag
     6781 tctggcaaac aatgcacaca ccacgaacta ctactcagcc ttcgatgaag attttgaaag
     6841 caagtacctc cgaaccaatg agcacaatga atgggtcaag tcttgggttt ataatccaga
     6901 cacagtgttg tggggcccgt tgaaacttaa agacagcact cccaaagggt tattcaaaac
     6961 aacaaagctt gtgcaagatc taatcgatca tgatgtagtg gtggagcaag ctaagcattc
     7021 tgcatggatg tttgaagcct tgacaggaaa tttgcaagct gtcgcaacaa tgaagagcca
     7081 attagtaacc aagcatgtag ttaaaggaga gtgtcgacac ttcacagaat ttctgactgt
     7141 ggatgcagag gcagaggcag aggcattctt caggcctttg atggatgcgt atgggaaaag
     7201 cttgctaaat agagatgcgt acatcaagga cataatgaag tattcaaaac ctatagatgt
     7261 tggtgtcgtg gatcggatgc atttgaggaa gccatcaata gggttatcat ctacctgcaa
     7321 tgtgcacggc ttcaagaagt gtgcatatgt cactgatgag caagaaattt tcaaagcgct
     7381 caacatgaaa gctgcagtcg gagccagtta tgggtgcaaa aagaaagact attttgagca
     7441 tttcactgat gcagataagg aagaaatagt catgcaaagc tgtctgcgat tgtataaagg
     7501 tttgcttggc atttggaacg gatcattgaa ggcagagctc cggtgtaagg agaagatact
     7561 tgcaaataag acgaggacgt tcactgctgc acctctagac actttgctgg gtggtaaagt
     7621 gtgtgttgat gacttcaata atcaatttta ttcaaagaat attgaatgct gttggacagt
     7681 tgggatgact aagttttatg gtggttggga taaactgctt cggcgtttac ctgagaattg
     7741 ggtatactgt gatgctgatg gctcacagtt tgatagttca ctaactccat acctaatcaa
     7801 tgctgttctc accatcagaa gcacatacat ggaagactgg gatgtggggt tgcagatgct
     7861 gcgcaattta tacactgaga ttgtttacac accaatttca actccagatg gaacaattgt
     7921 caagaagttt agaggtaata atagtggtca accttctacc gttgtggata attctctcat
     7981 ggttgtcctt gctatgcatt acgctctcat taaggagtgc gttgagtttg aagaaatcga
     8041 cagcacgtgt gtattctttg ttaatggtga tgacttattg attgctgtga atccggagaa
     8101 agagagcatt ctcgatagaa tgtcacaaca tttctcagat cttggtttga actatgattt
     8161 ttcgtcgaga acaagaagga aggaggaatt gtggttcatg tcccatagag gcctgctaat
     8221 cgagggtatg tacgtgccaa agcttgaaga agagagaatt gtatccattc tgcaatggga
     8281 tagagctgat ctgccagagc acagattaga agcgatttgc gcagctatga tagagtcctg
     8341 gggttattct gaactaacac accaaatcag gagattctac tcatggttat tgcaacagca
     8401 accttttgca acaatagcgc aggaagggaa ggctccttat atagcaagca tggcactaag
     8461 gaaactgtat atggataggg ctgtggatga ggaagagcta agagccttca ctgaaatgat
     8521 ggtcgcatta gatgatgagt ttgagcttga ctcttatgaa gtacaccatc aagcaaatga
     8581 cacaattgat gcaggaggaa gcaacaagaa agatgcaaaa ccagagcagg gcagcatcca
     8641 gccaaacccg aacaaaggaa aggataagga tgttaatgca ggcacatctg ggacacatac
     8701 tgtgccgaga atcaaggcta tcacgtccaa aatgagaatg cccacaagca agggagcaac
     8761 cgtgctaaac ttagaacatt tgcttgagta tgctccacaa caaattgata tttcaaatac
     8821 tcgggcaact caatcacagt ttgatacgtg gtatgaggca gtgcggatgg catacgacat
     8881 aggagaaact gagatgccaa ctgtgatgaa tgggcttatg gtttggtgca ttgaaaatgg
     8941 aacctcgcca aatgtcaacg gagtttgggt tatgatggat gggaatgaac aagttgagta
     9001 cccgttgaaa ccaatcgttg agaatgcaaa accaaccctt aggcaaatca tggcacattt
     9061 ctcagatgtt gcagaagcgt atatagaaat gcgcaacaaa aaggaaccat atatgccacg
     9121 atatggttta attcgaaatc tgcgggatat gggtttagcg cgttatgcct ttgactttta
     9181 tgaggtcaca tcacgaacac cagtgagggc tagggaagcg cacattcaaa tgaaggccgc
     9241 agcattgaaa tcagcccaac ctcgactttt cgggttggac ggtggcatca gtacacaaga
     9301 ggagaacaca gagaggcaca ccaccgagga tgtctctcca agtatgcata ctctacttgg
     9361 agtcaagaac atgtgatgta gtgtctctcc ggacgatata taagtattta catatgcagt
     9421 aagtattttg gcttttcctg tactactttt atcataatta ataatcgttt gaatattact
     9481 ggcagatagg ggtggtatag cgattccgtc gttgttagtg accttagctg tcggttctgt
     9541 attattaagt cttagataaa aagtgccggg ttgttgttgt gtgactgatc tatcgattag
     9601 gtgatgctgt gattctgtca tagcagtgac tatgtctgga tttagttact tgggtgatgc
     9661 tgtgattctg tcatagcagt gactgtaaac ttcaatcagg agac
//